Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02700 and HGI48_RS02705 are separated by 187 nucleotides HGI48_RS02705 and HGI48_RS02710 are separated by 50 nucleotides HGI48_RS02710 and HGI48_RS02715 are separated by 430 nucleotides HGI48_RS02715 and HGI48_RS02720 are separated by 21 nucleotides
HGI48_RS02700: HGI48_RS02700 - FxsA family protein, at 583,993 to 584,496
_RS02700
HGI48_RS02705: HGI48_RS02705 - co-chaperone GroES, at 584,684 to 584,977
_RS02705
HGI48_RS02710: HGI48_RS02710 - chaperonin GroEL, at 585,028 to 586,674
_RS02710
HGI48_RS02715: HGI48_RS02715 - chorismate lyase, at 587,105 to 587,620
_RS02715
HGI48_RS02720: HGI48_RS02720 - 4-hydroxybenzoate octaprenyltransferase, at 587,642 to 588,505
_RS02720
Position (kb) 585
586
587 Strain fitness (log2 ratio) -2
-1
0
1
2 at 584.033 kb on - strand at 584.127 kb on + strand, within HGI48_RS02700 at 584.127 kb on + strand, within HGI48_RS02700 at 584.128 kb on - strand, within HGI48_RS02700 at 584.128 kb on - strand, within HGI48_RS02700 at 584.128 kb on - strand, within HGI48_RS02700 at 584.212 kb on - strand, within HGI48_RS02700 at 584.225 kb on + strand at 584.241 kb on - strand, within HGI48_RS02700 at 584.241 kb on - strand, within HGI48_RS02700 at 584.549 kb on + strand at 584.549 kb on + strand at 584.550 kb on - strand at 584.550 kb on - strand at 584.602 kb on + strand at 584.602 kb on + strand at 584.602 kb on + strand at 586.771 kb on + strand at 586.771 kb on + strand at 586.771 kb on + strand at 586.771 kb on + strand at 586.771 kb on + strand at 586.772 kb on - strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.799 kb on + strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.800 kb on - strand at 586.805 kb on + strand at 586.805 kb on + strand at 586.805 kb on + strand at 586.805 kb on + strand at 586.805 kb on + strand at 586.805 kb on + strand at 586.824 kb on - strand at 586.824 kb on - strand at 586.824 kb on - strand at 586.824 kb on - strand at 586.824 kb on - strand at 586.842 kb on - strand at 586.842 kb on - strand at 586.842 kb on - strand at 586.859 kb on + strand at 586.860 kb on - strand at 586.860 kb on - strand at 586.877 kb on + strand at 586.877 kb on + strand at 586.877 kb on + strand at 586.877 kb on + strand at 586.877 kb on + strand at 586.877 kb on + strand at 586.895 kb on + strand at 586.895 kb on + strand at 586.895 kb on + strand at 586.895 kb on + strand at 586.914 kb on + strand at 586.914 kb on + strand at 586.915 kb on - strand at 586.964 kb on + strand at 586.965 kb on - strand at 586.973 kb on + strand at 586.973 kb on + strand at 586.974 kb on - strand at 587.035 kb on + strand at 587.035 kb on + strand at 587.058 kb on + strand at 587.058 kb on + strand at 587.058 kb on + strand at 587.059 kb on - strand at 587.074 kb on + strand at 587.078 kb on + strand at 587.079 kb on - strand at 587.102 kb on + strand at 587.203 kb on + strand, within HGI48_RS02715 at 587.203 kb on + strand at 587.321 kb on + strand, within HGI48_RS02715 at 587.367 kb on + strand at 587.367 kb on + strand, within HGI48_RS02715 at 587.377 kb on + strand, within HGI48_RS02715 at 587.594 kb on + strand at 587.594 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 584,033 - -0.1 584,127 + HGI48_RS02700 0.27 -0.4 584,127 + HGI48_RS02700 0.27 -0.4 584,128 - HGI48_RS02700 0.27 +0.0 584,128 - HGI48_RS02700 0.27 -0.7 584,128 - HGI48_RS02700 0.27 -1.3 584,212 - HGI48_RS02700 0.43 -1.4 584,225 + -0.9 584,241 - HGI48_RS02700 0.49 -0.1 584,241 - HGI48_RS02700 0.49 +0.7 584,549 + -0.1 584,549 + -0.8 584,550 - -0.3 584,550 - -0.5 584,602 + +1.3 584,602 + +0.4 584,602 + -0.0 586,771 + -1.1 586,771 + +0.0 586,771 + +0.5 586,771 + +0.2 586,771 + -1.4 586,772 - -1.9 586,799 + -0.7 586,799 + -0.0 586,799 + -0.9 586,799 + +1.9 586,799 + -0.7 586,799 + -1.1 586,799 + +0.0 586,799 + +0.7 586,799 + -0.6 586,799 + -1.1 586,799 + -0.6 586,799 + -0.3 586,799 + +1.2 586,799 + -0.6 586,800 - +1.0 586,800 - +0.2 586,800 - +0.7 586,800 - +0.4 586,800 - -0.3 586,800 - +0.7 586,800 - -0.4 586,800 - -0.9 586,800 - -0.9 586,800 - +0.7 586,800 - +0.2 586,800 - +1.0 586,800 - +0.7 586,805 + -2.3 586,805 + -1.4 586,805 + -1.1 586,805 + +1.5 586,805 + -0.9 586,805 + -0.2 586,824 - -1.6 586,824 - +1.3 586,824 - +1.7 586,824 - -1.0 586,824 - +2.0 586,842 - +0.2 586,842 - -1.1 586,842 - -1.4 586,859 + +0.3 586,860 - -0.9 586,860 - -1.9 586,877 + -0.4 586,877 + -2.1 586,877 + -1.5 586,877 + -2.0 586,877 + +1.4 586,877 + +0.0 586,895 + +1.2 586,895 + +0.7 586,895 + -0.3 586,895 + +0.9 586,914 + +0.2 586,914 + -0.1 586,915 - -0.0 586,964 + -0.7 586,965 - -0.2 586,973 + -0.4 586,973 + -0.3 586,974 - +1.3 587,035 + -0.3 587,035 + +1.1 587,058 + -0.3 587,058 + +0.5 587,058 + -2.3 587,059 - +0.5 587,074 + -0.0 587,078 + +1.1 587,079 - -0.6 587,102 + +0.9 587,203 + HGI48_RS02715 0.19 +1.1 587,203 + +1.7 587,321 + HGI48_RS02715 0.42 -0.3 587,367 + +0.1 587,367 + HGI48_RS02715 0.51 -1.1 587,377 + HGI48_RS02715 0.53 -0.3 587,594 + -1.1 587,594 + -0.5
Or see this region's nucleotide sequence