Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02470 and HGI48_RS02475 are separated by 230 nucleotides HGI48_RS02475 and HGI48_RS02480 overlap by 16 nucleotides HGI48_RS02480 and HGI48_RS02485 overlap by 4 nucleotides HGI48_RS02485 and HGI48_RS02490 are separated by 302 nucleotides
HGI48_RS02470: HGI48_RS02470 - DUF1868 domain-containing protein, at 534,742 to 535,572
_RS02470
HGI48_RS02475: HGI48_RS02475 - acetyltransferase, at 535,803 to 536,483
_RS02475
HGI48_RS02480: HGI48_RS02480 - hydroxyisourate hydrolase, at 536,468 to 536,800
_RS02480
HGI48_RS02485: HGI48_RS02485 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 536,797 to 537,297
_RS02485
HGI48_RS02490: HGI48_RS02490 - LysR family transcriptional regulator, at 537,600 to 538,538
_RS02490
Position (kb) 536
537 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 535.518 kb on + strand at 535.518 kb on + strand at 535.518 kb on + strand at 535.518 kb on + strand at 535.519 kb on - strand at 535.519 kb on - strand at 535.519 kb on - strand at 535.523 kb on + strand at 535.523 kb on + strand at 535.562 kb on - strand at 535.590 kb on + strand at 535.590 kb on + strand at 535.590 kb on + strand at 535.591 kb on - strand at 535.591 kb on - strand at 535.591 kb on - strand at 535.597 kb on + strand at 535.597 kb on + strand at 535.598 kb on - strand at 535.598 kb on - strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.601 kb on - strand at 535.601 kb on - strand at 535.601 kb on - strand at 535.601 kb on - strand at 535.601 kb on - strand at 535.608 kb on + strand at 535.608 kb on + strand at 535.617 kb on + strand at 535.617 kb on + strand at 535.617 kb on + strand at 535.617 kb on + strand at 535.617 kb on + strand at 535.618 kb on - strand at 535.618 kb on - strand at 535.618 kb on - strand at 535.625 kb on - strand at 535.625 kb on - strand at 535.625 kb on - strand at 535.625 kb on - strand at 535.629 kb on - strand at 535.641 kb on + strand at 535.642 kb on - strand at 535.646 kb on + strand at 535.667 kb on + strand at 535.692 kb on + strand at 535.693 kb on - strand at 535.693 kb on - strand at 535.693 kb on - strand at 535.693 kb on - strand at 535.693 kb on - strand at 535.703 kb on + strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.802 kb on + strand at 535.802 kb on + strand at 535.861 kb on + strand at 535.861 kb on + strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.874 kb on + strand, within HGI48_RS02475 at 535.910 kb on + strand, within HGI48_RS02475 at 535.910 kb on + strand, within HGI48_RS02475 at 535.911 kb on - strand, within HGI48_RS02475 at 535.911 kb on - strand, within HGI48_RS02475 at 535.941 kb on + strand, within HGI48_RS02475 at 535.941 kb on + strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 536.085 kb on + strand, within HGI48_RS02475 at 536.085 kb on + strand, within HGI48_RS02475 at 536.086 kb on - strand, within HGI48_RS02475 at 536.430 kb on + strand at 536.430 kb on + strand at 536.430 kb on + strand at 536.431 kb on - strand at 536.486 kb on - strand at 536.486 kb on - strand at 536.523 kb on + strand, within HGI48_RS02480 at 536.523 kb on + strand, within HGI48_RS02480 at 536.524 kb on - strand at 536.568 kb on + strand, within HGI48_RS02480 at 536.568 kb on + strand, within HGI48_RS02480 at 536.569 kb on - strand, within HGI48_RS02480 at 536.569 kb on - strand, within HGI48_RS02480 at 536.788 kb on + strand at 536.789 kb on - strand at 536.789 kb on - strand at 536.794 kb on + strand at 536.795 kb on - strand at 536.795 kb on - strand at 536.832 kb on + strand at 537.012 kb on + strand, within HGI48_RS02485 at 537.152 kb on - strand, within HGI48_RS02485 at 537.276 kb on + strand at 537.277 kb on - strand at 537.286 kb on + strand at 537.286 kb on + strand at 537.286 kb on + strand at 537.287 kb on - strand at 537.287 kb on - strand at 537.287 kb on - strand at 537.287 kb on - strand at 537.329 kb on + strand at 537.329 kb on + strand at 537.329 kb on + strand at 537.330 kb on - strand at 537.364 kb on + strand at 537.389 kb on + strand at 537.401 kb on + strand at 537.404 kb on - strand at 537.433 kb on - strand at 537.444 kb on + strand at 537.444 kb on + strand at 537.444 kb on + strand at 537.444 kb on + strand at 537.444 kb on + strand at 537.444 kb on + strand at 537.445 kb on - strand at 537.445 kb on - strand at 537.445 kb on - strand at 537.445 kb on - strand at 537.445 kb on - strand at 537.445 kb on - strand at 537.445 kb on - strand at 537.482 kb on - strand at 537.482 kb on - strand at 537.517 kb on + strand at 537.535 kb on + strand at 537.564 kb on + strand at 537.678 kb on + strand at 537.678 kb on + strand at 537.794 kb on + strand, within HGI48_RS02490 at 537.794 kb on + strand, within HGI48_RS02490 at 537.796 kb on + strand, within HGI48_RS02490
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 535,518 + -0.1 535,518 + -0.9 535,518 + +0.6 535,518 + +0.4 535,519 - -0.9 535,519 - +0.5 535,519 - -0.5 535,523 + -0.1 535,523 + -0.1 535,562 - -2.1 535,590 + +0.7 535,590 + -0.1 535,590 + -0.0 535,591 - +1.6 535,591 - +0.1 535,591 - -1.7 535,597 + -0.0 535,597 + +0.3 535,598 - +0.1 535,598 - -0.3 535,600 + -0.0 535,600 + -0.3 535,600 + -1.1 535,600 + -0.1 535,600 + -0.3 535,600 + -1.9 535,600 + +0.1 535,600 + +0.4 535,601 - +0.8 535,601 - +0.1 535,601 - +1.1 535,601 - +1.7 535,601 - -1.3 535,608 + +0.0 535,608 + +1.1 535,617 + +0.7 535,617 + -0.8 535,617 + +0.1 535,617 + +0.1 535,617 + +1.3 535,618 - -0.3 535,618 - +1.0 535,618 - -0.7 535,625 - -0.0 535,625 - +0.7 535,625 - -0.3 535,625 - +0.3 535,629 - -0.5 535,641 + -0.3 535,642 - -0.0 535,646 + -0.8 535,667 + -1.3 535,692 + -0.6 535,693 - -0.3 535,693 - -0.2 535,693 - +0.2 535,693 - -0.1 535,693 - -0.3 535,703 + -1.4 535,758 + +0.4 535,758 + -0.3 535,758 + +0.7 535,759 - -0.2 535,759 - -1.5 535,759 - -0.1 535,759 - -0.6 535,802 + -1.6 535,802 + -1.1 535,861 + +1.3 535,861 + -0.9 535,862 - -0.2 535,862 - -0.3 535,862 - -1.3 535,862 - +1.1 535,862 - -0.2 535,862 - -2.7 535,862 - -0.9 535,874 + HGI48_RS02475 0.10 +1.4 535,910 + HGI48_RS02475 0.16 -0.5 535,910 + HGI48_RS02475 0.16 -1.4 535,911 - HGI48_RS02475 0.16 -0.7 535,911 - HGI48_RS02475 0.16 -0.3 535,941 + HGI48_RS02475 0.20 -0.3 535,941 + HGI48_RS02475 0.20 +0.1 535,942 - HGI48_RS02475 0.20 -0.6 535,942 - HGI48_RS02475 0.20 +0.4 535,942 - HGI48_RS02475 0.20 +0.5 535,942 - HGI48_RS02475 0.20 +0.7 535,942 - HGI48_RS02475 0.20 -1.9 535,947 + HGI48_RS02475 0.21 -3.1 535,947 + HGI48_RS02475 0.21 -2.1 535,947 + HGI48_RS02475 0.21 +0.4 535,947 + +0.7 535,947 + HGI48_RS02475 0.21 -0.1 535,947 + HGI48_RS02475 0.21 +1.0 535,947 + HGI48_RS02475 0.21 -1.1 535,947 + HGI48_RS02475 0.21 +0.2 535,947 + HGI48_RS02475 0.21 -0.2 535,947 + HGI48_RS02475 0.21 -0.9 535,948 - HGI48_RS02475 0.21 -1.9 535,948 - HGI48_RS02475 0.21 -0.8 535,948 - HGI48_RS02475 0.21 -0.0 535,948 - HGI48_RS02475 0.21 -0.3 535,948 - HGI48_RS02475 0.21 -0.7 535,948 - HGI48_RS02475 0.21 +0.4 536,085 + HGI48_RS02475 0.41 +0.9 536,085 + HGI48_RS02475 0.41 -1.3 536,086 - HGI48_RS02475 0.42 +0.0 536,430 + -0.1 536,430 + -0.1 536,430 + -0.9 536,431 - -0.0 536,486 - -0.4 536,486 - -0.1 536,523 + HGI48_RS02480 0.17 -0.3 536,523 + HGI48_RS02480 0.17 -0.2 536,524 - +0.1 536,568 + HGI48_RS02480 0.30 +0.4 536,568 + HGI48_RS02480 0.30 +0.3 536,569 - HGI48_RS02480 0.30 +0.4 536,569 - HGI48_RS02480 0.30 -0.0 536,788 + -1.1 536,789 - -0.3 536,789 - +0.4 536,794 + +0.1 536,795 - +0.3 536,795 - -0.6 536,832 + -0.4 537,012 + HGI48_RS02485 0.43 -1.9 537,152 - HGI48_RS02485 0.71 -0.0 537,276 + +0.3 537,277 - -0.0 537,286 + -0.3 537,286 + +1.7 537,286 + -1.4 537,287 - +1.3 537,287 - +0.7 537,287 - +1.2 537,287 - -0.3 537,329 + +0.5 537,329 + +0.6 537,329 + -0.3 537,330 - +0.3 537,364 + +0.1 537,389 + -1.4 537,401 + +0.4 537,404 - -0.5 537,433 - -0.3 537,444 + -0.6 537,444 + -0.0 537,444 + -0.6 537,444 + -0.0 537,444 + -0.7 537,444 + -0.6 537,445 - +0.7 537,445 - -2.1 537,445 - +0.2 537,445 - -1.9 537,445 - -1.3 537,445 - +1.3 537,445 - +0.1 537,482 - +0.3 537,482 - +0.0 537,517 + +1.3 537,535 + +1.5 537,564 + +0.1 537,678 + +0.7 537,678 + -1.0 537,794 + HGI48_RS02490 0.21 +0.1 537,794 + HGI48_RS02490 0.21 -1.6 537,796 + HGI48_RS02490 0.21 +0.3
Or see this region's nucleotide sequence