Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02460

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02455 and HGI48_RS02460 are separated by 104 nucleotidesHGI48_RS02460 and HGI48_RS02465 are separated by 73 nucleotides HGI48_RS02455: HGI48_RS02455 - iron ABC transporter permease, at 531,264 to 532,262 _RS02455 HGI48_RS02460: HGI48_RS02460 - alkyl hydroperoxide reductase subunit C, at 532,367 to 532,930 _RS02460 HGI48_RS02465: HGI48_RS02465 - alkyl hydroperoxide reductase subunit F, at 533,004 to 534,566 _RS02465 Position (kb) 532 533Strain fitness (log2 ratio) -2 -1 0 1 2at 531.738 kb on - strand, within HGI48_RS02455at 531.738 kb on - strand, within HGI48_RS02455at 531.738 kb on - strandat 531.768 kb on + strand, within HGI48_RS02455at 531.768 kb on + strand, within HGI48_RS02455at 531.768 kb on + strand, within HGI48_RS02455at 531.769 kb on - strand, within HGI48_RS02455at 531.769 kb on - strand, within HGI48_RS02455at 532.260 kb on + strandat 532.260 kb on + strandat 532.271 kb on + strandat 532.324 kb on + strandat 532.324 kb on + strandat 532.324 kb on + strandat 532.325 kb on - strandat 532.325 kb on - strandat 532.325 kb on - strandat 532.325 kb on - strandat 532.325 kb on - strandat 532.325 kb on - strandat 532.345 kb on + strandat 532.345 kb on + strandat 532.345 kb on + strandat 532.345 kb on + strandat 532.346 kb on - strandat 532.346 kb on - strandat 532.346 kb on - strandat 532.352 kb on + strandat 532.352 kb on + strandat 532.352 kb on + strandat 532.353 kb on - strandat 532.353 kb on - strandat 532.353 kb on - strandat 532.353 kb on - strandat 532.381 kb on + strandat 532.381 kb on + strandat 532.382 kb on - strandat 532.382 kb on - strandat 532.382 kb on - strandat 532.384 kb on + strandat 532.385 kb on - strandat 532.482 kb on - strand, within HGI48_RS02460at 532.496 kb on - strand, within HGI48_RS02460at 532.538 kb on + strand, within HGI48_RS02460at 532.538 kb on + strand, within HGI48_RS02460at 532.539 kb on - strand, within HGI48_RS02460at 532.563 kb on + strand, within HGI48_RS02460at 532.571 kb on + strand, within HGI48_RS02460at 532.571 kb on + strand, within HGI48_RS02460at 532.571 kb on + strand, within HGI48_RS02460at 532.572 kb on - strandat 532.572 kb on - strand, within HGI48_RS02460at 532.572 kb on - strand, within HGI48_RS02460at 532.597 kb on + strand, within HGI48_RS02460at 532.598 kb on - strand, within HGI48_RS02460at 532.646 kb on + strand, within HGI48_RS02460at 532.646 kb on + strand, within HGI48_RS02460at 532.646 kb on + strand, within HGI48_RS02460at 532.647 kb on - strand, within HGI48_RS02460at 532.647 kb on - strand, within HGI48_RS02460at 532.647 kb on - strand, within HGI48_RS02460at 532.647 kb on - strand, within HGI48_RS02460at 532.647 kb on - strand, within HGI48_RS02460at 532.647 kb on - strand, within HGI48_RS02460at 532.835 kb on + strand, within HGI48_RS02460at 532.928 kb on + strandat 532.998 kb on + strandat 532.998 kb on + strandat 533.003 kb on + strandat 533.003 kb on + strandat 533.004 kb on - strandat 533.015 kb on + strandat 533.040 kb on + strandat 533.176 kb on + strand, within HGI48_RS02465at 533.264 kb on + strand, within HGI48_RS02465at 533.326 kb on + strand, within HGI48_RS02465at 533.327 kb on - strand, within HGI48_RS02465at 533.373 kb on + strand, within HGI48_RS02465at 533.373 kb on + strand, within HGI48_RS02465at 533.373 kb on + strand, within HGI48_RS02465at 533.374 kb on - strand, within HGI48_RS02465at 533.374 kb on - strand, within HGI48_RS02465at 533.374 kb on - strand, within HGI48_RS02465at 533.374 kb on - strand, within HGI48_RS02465at 533.376 kb on + strand, within HGI48_RS02465at 533.376 kb on + strandat 533.377 kb on - strand, within HGI48_RS02465at 533.425 kb on + strand, within HGI48_RS02465at 533.426 kb on - strand, within HGI48_RS02465at 533.426 kb on - strand, within HGI48_RS02465at 533.504 kb on + strand, within HGI48_RS02465at 533.524 kb on + strand, within HGI48_RS02465at 533.525 kb on - strand, within HGI48_RS02465at 533.525 kb on - strand, within HGI48_RS02465at 533.588 kb on - strand, within HGI48_RS02465at 533.641 kb on - strand, within HGI48_RS02465at 533.641 kb on - strand, within HGI48_RS02465at 533.641 kb on - strand, within HGI48_RS02465at 533.641 kb on - strand, within HGI48_RS02465at 533.641 kb on - strand, within HGI48_RS02465at 533.641 kb on - strand, within HGI48_RS02465at 533.691 kb on + strand, within HGI48_RS02465at 533.691 kb on + strand, within HGI48_RS02465at 533.775 kb on + strand, within HGI48_RS02465at 533.775 kb on + strand, within HGI48_RS02465at 533.776 kb on - strand, within HGI48_RS02465at 533.841 kb on + strand, within HGI48_RS02465at 533.841 kb on + strand, within HGI48_RS02465at 533.841 kb on + strand, within HGI48_RS02465at 533.842 kb on - strand, within HGI48_RS02465

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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531,738 - HGI48_RS02455 0.47 +0.1
531,738 - HGI48_RS02455 0.47 +0.3
531,738 - -0.9
531,768 + HGI48_RS02455 0.50 +0.4
531,768 + HGI48_RS02455 0.50 +0.5
531,768 + HGI48_RS02455 0.50 +1.1
531,769 - HGI48_RS02455 0.51 -0.0
531,769 - HGI48_RS02455 0.51 -0.9
532,260 + -1.9
532,260 + -0.9
532,271 + -0.0
532,324 + +1.0
532,324 + +1.3
532,324 + -0.3
532,325 - -1.6
532,325 - -0.3
532,325 - -0.3
532,325 - -0.3
532,325 - -1.4
532,325 - -0.3
532,345 + +1.1
532,345 + +0.6
532,345 + +1.6
532,345 + +1.0
532,346 - -0.4
532,346 - +1.2
532,346 - +1.7
532,352 + +0.7
532,352 + +1.3
532,352 + -2.0
532,353 - -0.6
532,353 - +0.2
532,353 - +0.7
532,353 - -1.9
532,381 + -0.5
532,381 + -0.9
532,382 - +0.1
532,382 - -0.3
532,382 - +1.7
532,384 + -0.5
532,385 - +0.1
532,482 - HGI48_RS02460 0.20 -0.3
532,496 - HGI48_RS02460 0.23 -0.6
532,538 + HGI48_RS02460 0.30 -0.8
532,538 + HGI48_RS02460 0.30 +0.6
532,539 - HGI48_RS02460 0.30 +0.1
532,563 + HGI48_RS02460 0.35 -0.6
532,571 + HGI48_RS02460 0.36 -1.1
532,571 + HGI48_RS02460 0.36 -2.1
532,571 + HGI48_RS02460 0.36 -0.3
532,572 - +0.7
532,572 - HGI48_RS02460 0.36 +0.5
532,572 - HGI48_RS02460 0.36 -1.9
532,597 + HGI48_RS02460 0.41 -0.3
532,598 - HGI48_RS02460 0.41 -0.9
532,646 + HGI48_RS02460 0.49 -0.0
532,646 + HGI48_RS02460 0.49 +0.7
532,646 + HGI48_RS02460 0.49 -0.4
532,647 - HGI48_RS02460 0.50 -1.3
532,647 - HGI48_RS02460 0.50 -0.0
532,647 - HGI48_RS02460 0.50 -2.1
532,647 - HGI48_RS02460 0.50 +0.7
532,647 - HGI48_RS02460 0.50 +0.7
532,647 - HGI48_RS02460 0.50 +0.3
532,835 + HGI48_RS02460 0.83 -0.7
532,928 + -0.1
532,998 + -0.5
532,998 + +0.3
533,003 + -0.9
533,003 + +0.2
533,004 - -1.1
533,015 + -0.3
533,040 + +0.4
533,176 + HGI48_RS02465 0.11 -0.3
533,264 + HGI48_RS02465 0.17 -0.5
533,326 + HGI48_RS02465 0.21 +1.4
533,327 - HGI48_RS02465 0.21 +0.5
533,373 + HGI48_RS02465 0.24 -1.3
533,373 + HGI48_RS02465 0.24 -1.4
533,373 + HGI48_RS02465 0.24 -2.4
533,374 - HGI48_RS02465 0.24 +0.1
533,374 - HGI48_RS02465 0.24 +0.5
533,374 - HGI48_RS02465 0.24 +0.7
533,374 - HGI48_RS02465 0.24 +0.1
533,376 + HGI48_RS02465 0.24 -0.3
533,376 + +2.0
533,377 - HGI48_RS02465 0.24 -1.1
533,425 + HGI48_RS02465 0.27 -0.3
533,426 - HGI48_RS02465 0.27 +0.2
533,426 - HGI48_RS02465 0.27 -0.4
533,504 + HGI48_RS02465 0.32 +0.3
533,524 + HGI48_RS02465 0.33 +0.4
533,525 - HGI48_RS02465 0.33 -0.3
533,525 - HGI48_RS02465 0.33 -0.1
533,588 - HGI48_RS02465 0.37 -2.3
533,641 - HGI48_RS02465 0.41 +0.1
533,641 - HGI48_RS02465 0.41 +0.1
533,641 - HGI48_RS02465 0.41 -0.3
533,641 - HGI48_RS02465 0.41 +0.5
533,641 - HGI48_RS02465 0.41 -0.7
533,641 - HGI48_RS02465 0.41 -0.4
533,691 + HGI48_RS02465 0.44 +0.4
533,691 + HGI48_RS02465 0.44 -0.3
533,775 + HGI48_RS02465 0.49 -0.0
533,775 + HGI48_RS02465 0.49 -0.4
533,776 - HGI48_RS02465 0.49 -0.9
533,841 + HGI48_RS02465 0.54 -0.3
533,841 + HGI48_RS02465 0.54 +1.1
533,841 + HGI48_RS02465 0.54 -2.0
533,842 - HGI48_RS02465 0.54 -1.4

Or see this region's nucleotide sequence