Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02400 and HGI48_RS02405 are separated by 359 nucleotides HGI48_RS02405 and HGI48_RS02410 are separated by 130 nucleotides HGI48_RS02410 and HGI48_RS02415 are separated by 39 nucleotides
HGI48_RS02400: HGI48_RS02400 - peptide chain release factor 3, at 519,953 to 521,542
_RS02400
HGI48_RS02405: HGI48_RS02405 - molecular chaperone OsmY, at 521,902 to 522,540
_RS02405
HGI48_RS02410: HGI48_RS02410 - stress-response protein, at 522,671 to 522,859
_RS02410
HGI48_RS02415: HGI48_RS02415 - TatD family hydrolase, at 522,899 to 523,738
_RS02415
Position (kb) 521
522
523 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 521.459 kb on + strand at 521.524 kb on + strand at 521.540 kb on + strand at 521.540 kb on + strand at 521.721 kb on + strand at 521.721 kb on + strand at 521.721 kb on + strand at 521.721 kb on + strand at 521.722 kb on - strand at 521.722 kb on - strand at 521.722 kb on - strand at 521.722 kb on - strand at 521.725 kb on + strand at 521.725 kb on + strand at 521.726 kb on - strand at 521.753 kb on + strand at 521.754 kb on - strand at 521.754 kb on - strand at 521.783 kb on + strand at 521.783 kb on + strand at 521.783 kb on + strand at 521.783 kb on + strand at 521.784 kb on - strand at 521.802 kb on + strand at 521.814 kb on + strand at 521.814 kb on + strand at 521.815 kb on - strand at 521.815 kb on - strand at 521.834 kb on - strand at 521.834 kb on - strand at 521.882 kb on + strand at 521.897 kb on + strand at 521.897 kb on + strand at 521.922 kb on - strand at 521.932 kb on - strand at 521.932 kb on - strand at 521.936 kb on - strand at 521.936 kb on - strand at 521.936 kb on - strand at 521.936 kb on - strand at 521.957 kb on + strand at 521.958 kb on - strand at 521.968 kb on - strand, within HGI48_RS02405 at 522.031 kb on - strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.105 kb on + strand at 522.279 kb on + strand, within HGI48_RS02405 at 522.280 kb on - strand, within HGI48_RS02405 at 522.280 kb on - strand, within HGI48_RS02405 at 522.297 kb on + strand at 522.298 kb on - strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.363 kb on + strand, within HGI48_RS02405 at 522.364 kb on - strand at 522.364 kb on - strand, within HGI48_RS02405 at 522.368 kb on + strand, within HGI48_RS02405 at 522.368 kb on + strand at 522.402 kb on + strand, within HGI48_RS02405 at 522.403 kb on - strand at 522.403 kb on - strand, within HGI48_RS02405 at 522.407 kb on + strand, within HGI48_RS02405 at 522.408 kb on - strand, within HGI48_RS02405 at 522.408 kb on - strand, within HGI48_RS02405 at 522.505 kb on - strand at 522.505 kb on - strand at 522.577 kb on - strand at 522.594 kb on - strand at 522.594 kb on - strand at 522.604 kb on + strand at 522.604 kb on + strand at 522.604 kb on + strand at 522.604 kb on + strand at 522.604 kb on + strand at 522.605 kb on - strand at 522.605 kb on - strand at 522.605 kb on - strand at 522.605 kb on - strand at 522.605 kb on - strand at 522.799 kb on - strand, within HGI48_RS02410 at 522.799 kb on - strand, within HGI48_RS02410 at 522.806 kb on + strand, within HGI48_RS02410 at 522.807 kb on - strand, within HGI48_RS02410 at 522.807 kb on - strand, within HGI48_RS02410 at 522.831 kb on + strand, within HGI48_RS02410 at 522.832 kb on - strand, within HGI48_RS02410 at 522.832 kb on - strand, within HGI48_RS02410 at 522.885 kb on + strand at 522.886 kb on - strand at 522.886 kb on - strand at 522.886 kb on - strand at 523.065 kb on - strand, within HGI48_RS02415 at 523.109 kb on + strand at 523.109 kb on + strand, within HGI48_RS02415 at 523.110 kb on - strand, within HGI48_RS02415 at 523.136 kb on + strand, within HGI48_RS02415 at 523.136 kb on + strand, within HGI48_RS02415 at 523.136 kb on + strand, within HGI48_RS02415 at 523.136 kb on + strand, within HGI48_RS02415 at 523.136 kb on + strand, within HGI48_RS02415 at 523.137 kb on - strand, within HGI48_RS02415 at 523.137 kb on - strand, within HGI48_RS02415 at 523.139 kb on - strand at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand, within HGI48_RS02415 at 523.238 kb on + strand at 523.238 kb on + strand, within HGI48_RS02415 at 523.239 kb on - strand, within HGI48_RS02415 at 523.239 kb on - strand, within HGI48_RS02415 at 523.291 kb on + strand, within HGI48_RS02415 at 523.291 kb on + strand, within HGI48_RS02415 at 523.291 kb on + strand, within HGI48_RS02415 at 523.292 kb on - strand, within HGI48_RS02415 at 523.292 kb on - strand, within HGI48_RS02415 at 523.292 kb on - strand, within HGI48_RS02415 at 523.340 kb on - strand, within HGI48_RS02415 at 523.363 kb on - strand, within HGI48_RS02415 at 523.418 kb on + strand, within HGI48_RS02415 at 523.419 kb on - strand, within HGI48_RS02415 at 523.451 kb on + strand, within HGI48_RS02415 at 523.451 kb on + strand, within HGI48_RS02415 at 523.451 kb on + strand, within HGI48_RS02415 at 523.452 kb on - strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.454 kb on + strand, within HGI48_RS02415 at 523.455 kb on - strand, within HGI48_RS02415 at 523.455 kb on - strand, within HGI48_RS02415 at 523.455 kb on - strand, within HGI48_RS02415 at 523.455 kb on - strand, within HGI48_RS02415 at 523.455 kb on - strand, within HGI48_RS02415 at 523.455 kb on - strand, within HGI48_RS02415 at 523.477 kb on + strand, within HGI48_RS02415 at 523.478 kb on - strand, within HGI48_RS02415 at 523.478 kb on - strand at 523.478 kb on - strand, within HGI48_RS02415 at 523.482 kb on - strand, within HGI48_RS02415
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 521,459 + +0.7 521,524 + +0.1 521,540 + +1.1 521,540 + -0.6 521,721 + -1.4 521,721 + +1.4 521,721 + -0.0 521,721 + +0.4 521,722 - -0.7 521,722 - +0.7 521,722 - -0.3 521,722 - +0.3 521,725 + +0.5 521,725 + +0.1 521,726 - -0.3 521,753 + +2.1 521,754 - +0.5 521,754 - -0.1 521,783 + +0.7 521,783 + +0.7 521,783 + -0.2 521,783 + -0.1 521,784 - -0.9 521,802 + +0.4 521,814 + -0.9 521,814 + -0.7 521,815 - +0.5 521,815 - +0.4 521,834 - -0.3 521,834 - +0.1 521,882 + -1.9 521,897 + -0.5 521,897 + -0.6 521,922 - -0.4 521,932 - +1.3 521,932 - +0.7 521,936 - -0.7 521,936 - -1.9 521,936 - +0.7 521,936 - +1.5 521,957 + -0.1 521,958 - +0.7 521,968 - HGI48_RS02405 0.10 -1.0 522,031 - HGI48_RS02405 0.20 +0.9 522,085 + HGI48_RS02405 0.29 +0.1 522,085 + HGI48_RS02405 0.29 +0.9 522,085 + HGI48_RS02405 0.29 -0.0 522,085 + HGI48_RS02405 0.29 +1.0 522,085 + HGI48_RS02405 0.29 -0.9 522,086 - HGI48_RS02405 0.29 +0.1 522,086 - HGI48_RS02405 0.29 +0.4 522,086 - +2.0 522,086 - HGI48_RS02405 0.29 -0.9 522,086 - HGI48_RS02405 0.29 -0.0 522,086 - HGI48_RS02405 0.29 -0.1 522,105 + +1.5 522,279 + HGI48_RS02405 0.59 +1.0 522,280 - HGI48_RS02405 0.59 -0.5 522,280 - HGI48_RS02405 0.59 -0.8 522,297 + +0.1 522,298 - HGI48_RS02405 0.62 -0.6 522,325 + HGI48_RS02405 0.66 +1.6 522,325 + HGI48_RS02405 0.66 -0.6 522,325 + HGI48_RS02405 0.66 +0.2 522,325 + HGI48_RS02405 0.66 -0.6 522,325 + +1.1 522,325 + HGI48_RS02405 0.66 -0.1 522,325 + HGI48_RS02405 0.66 -0.3 522,325 + HGI48_RS02405 0.66 -1.5 522,326 - HGI48_RS02405 0.66 +1.7 522,326 - HGI48_RS02405 0.66 +0.1 522,326 - HGI48_RS02405 0.66 +0.7 522,326 - HGI48_RS02405 0.66 -1.1 522,326 - HGI48_RS02405 0.66 +1.1 522,326 - HGI48_RS02405 0.66 -1.3 522,326 - HGI48_RS02405 0.66 +1.1 522,363 + HGI48_RS02405 0.72 +0.3 522,364 - +2.1 522,364 - HGI48_RS02405 0.72 -2.6 522,368 + HGI48_RS02405 0.73 +0.7 522,368 + +1.7 522,402 + HGI48_RS02405 0.78 -0.5 522,403 - -0.9 522,403 - HGI48_RS02405 0.78 +0.1 522,407 + HGI48_RS02405 0.79 -0.3 522,408 - HGI48_RS02405 0.79 -1.6 522,408 - HGI48_RS02405 0.79 -1.6 522,505 - -1.1 522,505 - +0.4 522,577 - +0.3 522,594 - +1.1 522,594 - +1.3 522,604 + +0.3 522,604 + +0.2 522,604 + -1.3 522,604 + -2.6 522,604 + +1.7 522,605 - +1.7 522,605 - +0.2 522,605 - -0.4 522,605 - +1.0 522,605 - -0.1 522,799 - HGI48_RS02410 0.68 -1.3 522,799 - HGI48_RS02410 0.68 -0.4 522,806 + HGI48_RS02410 0.71 +1.5 522,807 - HGI48_RS02410 0.72 -1.9 522,807 - HGI48_RS02410 0.72 -0.3 522,831 + HGI48_RS02410 0.85 -0.7 522,832 - HGI48_RS02410 0.85 -1.9 522,832 - HGI48_RS02410 0.85 -1.9 522,885 + +0.1 522,886 - -1.0 522,886 - -1.4 522,886 - +1.1 523,065 - HGI48_RS02415 0.20 -0.0 523,109 + +0.7 523,109 + HGI48_RS02415 0.25 -0.8 523,110 - HGI48_RS02415 0.25 +0.4 523,136 + HGI48_RS02415 0.28 +1.1 523,136 + HGI48_RS02415 0.28 -1.3 523,136 + HGI48_RS02415 0.28 -0.5 523,136 + HGI48_RS02415 0.28 -0.7 523,136 + HGI48_RS02415 0.28 -0.7 523,137 - HGI48_RS02415 0.28 -0.8 523,137 - HGI48_RS02415 0.28 -3.1 523,139 - +0.1 523,238 + HGI48_RS02415 0.40 +1.6 523,238 + HGI48_RS02415 0.40 -0.3 523,238 + HGI48_RS02415 0.40 -2.1 523,238 + HGI48_RS02415 0.40 -0.6 523,238 + HGI48_RS02415 0.40 -1.8 523,238 + HGI48_RS02415 0.40 +0.5 523,238 + HGI48_RS02415 0.40 +0.7 523,238 + +1.5 523,238 + HGI48_RS02415 0.40 -0.0 523,239 - HGI48_RS02415 0.40 -0.5 523,239 - HGI48_RS02415 0.40 -0.5 523,291 + HGI48_RS02415 0.47 -0.3 523,291 + HGI48_RS02415 0.47 -1.2 523,291 + HGI48_RS02415 0.47 -0.0 523,292 - HGI48_RS02415 0.47 +0.3 523,292 - HGI48_RS02415 0.47 +0.6 523,292 - HGI48_RS02415 0.47 +0.5 523,340 - HGI48_RS02415 0.53 +1.1 523,363 - HGI48_RS02415 0.55 -1.5 523,418 + HGI48_RS02415 0.62 -0.3 523,419 - HGI48_RS02415 0.62 +0.3 523,451 + HGI48_RS02415 0.66 -0.3 523,451 + HGI48_RS02415 0.66 -0.3 523,451 + HGI48_RS02415 0.66 -0.3 523,452 - HGI48_RS02415 0.66 -0.3 523,454 + HGI48_RS02415 0.66 -0.9 523,454 + HGI48_RS02415 0.66 -0.3 523,454 + HGI48_RS02415 0.66 -1.4 523,454 + HGI48_RS02415 0.66 +0.2 523,454 + HGI48_RS02415 0.66 +0.3 523,454 + HGI48_RS02415 0.66 -1.4 523,454 + HGI48_RS02415 0.66 +0.3 523,454 + HGI48_RS02415 0.66 +0.1 523,455 - HGI48_RS02415 0.66 -0.3 523,455 - HGI48_RS02415 0.66 +0.1 523,455 - HGI48_RS02415 0.66 -1.9 523,455 - HGI48_RS02415 0.66 -0.7 523,455 - HGI48_RS02415 0.66 +0.7 523,455 - HGI48_RS02415 0.66 +0.8 523,477 + HGI48_RS02415 0.69 +0.1 523,478 - HGI48_RS02415 0.69 -0.3 523,478 - -0.3 523,478 - HGI48_RS02415 0.69 -0.1 523,482 - HGI48_RS02415 0.69 +0.3
Or see this region's nucleotide sequence