Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02395 and HGI48_RS02400 are separated by 376 nucleotides HGI48_RS02400 and HGI48_RS02405 are separated by 359 nucleotides
HGI48_RS02395: HGI48_RS02395 - trans-aconitate 2-methyltransferase, at 518,800 to 519,576
_RS02395
HGI48_RS02400: HGI48_RS02400 - peptide chain release factor 3, at 519,953 to 521,542
_RS02400
HGI48_RS02405: HGI48_RS02405 - molecular chaperone OsmY, at 521,902 to 522,540
_RS02405
Position (kb) 519
520
521
522 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 518.979 kb on + strand, within HGI48_RS02395 at 518.979 kb on + strand, within HGI48_RS02395 at 518.979 kb on + strand, within HGI48_RS02395 at 518.980 kb on - strand, within HGI48_RS02395 at 518.980 kb on - strand at 519.008 kb on + strand, within HGI48_RS02395 at 519.008 kb on + strand, within HGI48_RS02395 at 519.008 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.012 kb on - strand, within HGI48_RS02395 at 519.012 kb on - strand, within HGI48_RS02395 at 519.012 kb on - strand, within HGI48_RS02395 at 519.012 kb on - strand, within HGI48_RS02395 at 519.062 kb on + strand, within HGI48_RS02395 at 519.063 kb on - strand, within HGI48_RS02395 at 519.065 kb on + strand, within HGI48_RS02395 at 519.284 kb on + strand, within HGI48_RS02395 at 519.285 kb on - strand, within HGI48_RS02395 at 519.342 kb on + strand, within HGI48_RS02395 at 519.342 kb on + strand, within HGI48_RS02395 at 519.342 kb on + strand, within HGI48_RS02395 at 519.343 kb on - strand, within HGI48_RS02395 at 519.551 kb on + strand at 519.591 kb on + strand at 519.608 kb on + strand at 519.608 kb on + strand at 519.608 kb on + strand at 519.621 kb on + strand at 519.622 kb on - strand at 519.622 kb on - strand at 519.622 kb on - strand at 519.629 kb on + strand at 519.629 kb on + strand at 519.629 kb on + strand at 519.629 kb on + strand at 519.630 kb on - strand at 519.630 kb on - strand at 519.630 kb on - strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.729 kb on - strand at 519.729 kb on - strand at 519.729 kb on - strand at 519.729 kb on - strand at 519.732 kb on + strand at 519.732 kb on + strand at 519.732 kb on + strand at 519.732 kb on + strand at 519.732 kb on + strand at 519.733 kb on - strand at 519.733 kb on - strand at 519.733 kb on - strand at 519.744 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.749 kb on - strand at 519.761 kb on + strand at 519.862 kb on + strand at 519.862 kb on + strand at 519.880 kb on + strand at 519.880 kb on + strand at 519.935 kb on + strand at 521.459 kb on + strand at 521.524 kb on + strand at 521.540 kb on + strand at 521.540 kb on + strand at 521.721 kb on + strand at 521.721 kb on + strand at 521.721 kb on + strand at 521.721 kb on + strand at 521.722 kb on - strand at 521.722 kb on - strand at 521.722 kb on - strand at 521.722 kb on - strand at 521.725 kb on + strand at 521.725 kb on + strand at 521.726 kb on - strand at 521.753 kb on + strand at 521.754 kb on - strand at 521.754 kb on - strand at 521.783 kb on + strand at 521.783 kb on + strand at 521.783 kb on + strand at 521.783 kb on + strand at 521.784 kb on - strand at 521.802 kb on + strand at 521.814 kb on + strand at 521.814 kb on + strand at 521.815 kb on - strand at 521.815 kb on - strand at 521.834 kb on - strand at 521.834 kb on - strand at 521.882 kb on + strand at 521.897 kb on + strand at 521.897 kb on + strand at 521.922 kb on - strand at 521.932 kb on - strand at 521.932 kb on - strand at 521.936 kb on - strand at 521.936 kb on - strand at 521.936 kb on - strand at 521.936 kb on - strand at 521.957 kb on + strand at 521.958 kb on - strand at 521.968 kb on - strand, within HGI48_RS02405 at 522.031 kb on - strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.105 kb on + strand at 522.279 kb on + strand, within HGI48_RS02405 at 522.280 kb on - strand, within HGI48_RS02405 at 522.280 kb on - strand, within HGI48_RS02405 at 522.297 kb on + strand at 522.298 kb on - strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.363 kb on + strand, within HGI48_RS02405 at 522.364 kb on - strand at 522.364 kb on - strand, within HGI48_RS02405 at 522.368 kb on + strand, within HGI48_RS02405 at 522.368 kb on + strand at 522.402 kb on + strand, within HGI48_RS02405 at 522.403 kb on - strand at 522.403 kb on - strand, within HGI48_RS02405 at 522.407 kb on + strand, within HGI48_RS02405 at 522.408 kb on - strand, within HGI48_RS02405 at 522.408 kb on - strand, within HGI48_RS02405 at 522.505 kb on - strand at 522.505 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 518,979 + HGI48_RS02395 0.23 -0.3 518,979 + HGI48_RS02395 0.23 -0.4 518,979 + HGI48_RS02395 0.23 -0.6 518,980 - HGI48_RS02395 0.23 +0.4 518,980 - +0.7 519,008 + HGI48_RS02395 0.27 +0.1 519,008 + HGI48_RS02395 0.27 -0.9 519,008 + HGI48_RS02395 0.27 -0.6 519,011 + HGI48_RS02395 0.27 +0.1 519,011 + +0.7 519,011 + HGI48_RS02395 0.27 -0.1 519,011 + HGI48_RS02395 0.27 -1.6 519,011 + HGI48_RS02395 0.27 +0.3 519,011 + HGI48_RS02395 0.27 +0.2 519,011 + HGI48_RS02395 0.27 -0.1 519,012 - HGI48_RS02395 0.27 -1.3 519,012 - HGI48_RS02395 0.27 -0.1 519,012 - HGI48_RS02395 0.27 -0.9 519,012 - HGI48_RS02395 0.27 -0.3 519,062 + HGI48_RS02395 0.34 -0.9 519,063 - HGI48_RS02395 0.34 +0.2 519,065 + HGI48_RS02395 0.34 +0.3 519,284 + HGI48_RS02395 0.62 -0.3 519,285 - HGI48_RS02395 0.62 -1.0 519,342 + HGI48_RS02395 0.70 -0.4 519,342 + HGI48_RS02395 0.70 +1.0 519,342 + HGI48_RS02395 0.70 -0.1 519,343 - HGI48_RS02395 0.70 -1.3 519,551 + +0.4 519,591 + -1.9 519,608 + -1.9 519,608 + +1.1 519,608 + +1.5 519,621 + -1.6 519,622 - +0.3 519,622 - +0.3 519,622 - -0.5 519,629 + -0.9 519,629 + +0.3 519,629 + +1.0 519,629 + -0.0 519,630 - +0.2 519,630 - +1.3 519,630 - -0.9 519,728 + +0.2 519,728 + -1.6 519,728 + -0.1 519,728 + -2.4 519,728 + -0.0 519,728 + -0.6 519,728 + -0.3 519,728 + +0.7 519,728 + -0.3 519,728 + +0.7 519,728 + -0.7 519,728 + +0.0 519,728 + -0.1 519,729 - -2.6 519,729 - -0.1 519,729 - +0.7 519,729 - +0.1 519,732 + -1.0 519,732 + -1.9 519,732 + +0.9 519,732 + -1.3 519,732 + +2.5 519,733 - +1.3 519,733 - -2.3 519,733 - +0.3 519,744 + -0.3 519,748 + -1.8 519,748 + +0.7 519,748 + -0.9 519,748 + -0.9 519,748 + -1.0 519,748 + +0.5 519,748 + -0.0 519,748 + +4.2 519,748 + -0.1 519,748 + +0.1 519,748 + +0.1 519,749 - -1.1 519,761 + -1.1 519,862 + -1.6 519,862 + -1.1 519,880 + +3.3 519,880 + -1.6 519,935 + +1.1 521,459 + +0.7 521,524 + +0.1 521,540 + +1.1 521,540 + -0.6 521,721 + -1.4 521,721 + +1.4 521,721 + -0.0 521,721 + +0.4 521,722 - -0.7 521,722 - +0.7 521,722 - -0.3 521,722 - +0.3 521,725 + +0.5 521,725 + +0.1 521,726 - -0.3 521,753 + +2.1 521,754 - +0.5 521,754 - -0.1 521,783 + +0.7 521,783 + +0.7 521,783 + -0.2 521,783 + -0.1 521,784 - -0.9 521,802 + +0.4 521,814 + -0.9 521,814 + -0.7 521,815 - +0.5 521,815 - +0.4 521,834 - -0.3 521,834 - +0.1 521,882 + -1.9 521,897 + -0.5 521,897 + -0.6 521,922 - -0.4 521,932 - +1.3 521,932 - +0.7 521,936 - -0.7 521,936 - -1.9 521,936 - +0.7 521,936 - +1.5 521,957 + -0.1 521,958 - +0.7 521,968 - HGI48_RS02405 0.10 -1.0 522,031 - HGI48_RS02405 0.20 +0.9 522,085 + HGI48_RS02405 0.29 +0.1 522,085 + HGI48_RS02405 0.29 +0.9 522,085 + HGI48_RS02405 0.29 -0.0 522,085 + HGI48_RS02405 0.29 +1.0 522,085 + HGI48_RS02405 0.29 -0.9 522,086 - HGI48_RS02405 0.29 +0.1 522,086 - HGI48_RS02405 0.29 +0.4 522,086 - +2.0 522,086 - HGI48_RS02405 0.29 -0.9 522,086 - HGI48_RS02405 0.29 -0.0 522,086 - HGI48_RS02405 0.29 -0.1 522,105 + +1.5 522,279 + HGI48_RS02405 0.59 +1.0 522,280 - HGI48_RS02405 0.59 -0.5 522,280 - HGI48_RS02405 0.59 -0.8 522,297 + +0.1 522,298 - HGI48_RS02405 0.62 -0.6 522,325 + HGI48_RS02405 0.66 +1.6 522,325 + HGI48_RS02405 0.66 -0.6 522,325 + HGI48_RS02405 0.66 +0.2 522,325 + HGI48_RS02405 0.66 -0.6 522,325 + +1.1 522,325 + HGI48_RS02405 0.66 -0.1 522,325 + HGI48_RS02405 0.66 -0.3 522,325 + HGI48_RS02405 0.66 -1.5 522,326 - HGI48_RS02405 0.66 +1.7 522,326 - HGI48_RS02405 0.66 +0.1 522,326 - HGI48_RS02405 0.66 +0.7 522,326 - HGI48_RS02405 0.66 -1.1 522,326 - HGI48_RS02405 0.66 +1.1 522,326 - HGI48_RS02405 0.66 -1.3 522,326 - HGI48_RS02405 0.66 +1.1 522,363 + HGI48_RS02405 0.72 +0.3 522,364 - +2.1 522,364 - HGI48_RS02405 0.72 -2.6 522,368 + HGI48_RS02405 0.73 +0.7 522,368 + +1.7 522,402 + HGI48_RS02405 0.78 -0.5 522,403 - -0.9 522,403 - HGI48_RS02405 0.78 +0.1 522,407 + HGI48_RS02405 0.79 -0.3 522,408 - HGI48_RS02405 0.79 -1.6 522,408 - HGI48_RS02405 0.79 -1.6 522,505 - -1.1 522,505 - +0.4
Or see this region's nucleotide sequence