Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02350 and HGI48_RS02355 are separated by 39 nucleotides HGI48_RS02355 and HGI48_RS02360 are separated by 234 nucleotides HGI48_RS02360 and HGI48_RS02370 are separated by 338 nucleotides HGI48_RS02370 and HGI48_RS02375 are separated by 13 nucleotides
HGI48_RS02350: HGI48_RS02350 - Xaa-Pro aminopeptidase, at 510,720 to 512,048
_RS02350
HGI48_RS02355: HGI48_RS02355 - YecA family protein, at 512,088 to 512,672
_RS02355
HGI48_RS02360: HGI48_RS02360 - cell division protein ZapA, at 512,907 to 513,236
_RS02360
HGI48_RS02370: HGI48_RS02370 - 5-formyltetrahydrofolate cyclo-ligase, at 513,575 to 514,189
_RS02370
HGI48_RS02375: HGI48_RS02375 - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 514,203 to 515,459
_RS02375
Position (kb) 512
513
514 Strain fitness (log2 ratio) -2
-1
0
1
2 at 511.950 kb on - strand at 512.033 kb on - strand at 512.172 kb on + strand, within HGI48_RS02355 at 512.172 kb on + strand, within HGI48_RS02355 at 512.172 kb on + strand, within HGI48_RS02355 at 512.172 kb on + strand, within HGI48_RS02355 at 512.173 kb on - strand, within HGI48_RS02355 at 512.173 kb on - strand, within HGI48_RS02355 at 512.176 kb on + strand at 512.176 kb on + strand, within HGI48_RS02355 at 512.176 kb on + strand, within HGI48_RS02355 at 512.176 kb on + strand, within HGI48_RS02355 at 512.177 kb on - strand, within HGI48_RS02355 at 512.177 kb on - strand, within HGI48_RS02355 at 512.177 kb on - strand, within HGI48_RS02355 at 512.177 kb on - strand, within HGI48_RS02355 at 512.257 kb on - strand, within HGI48_RS02355 at 512.257 kb on - strand, within HGI48_RS02355 at 512.257 kb on - strand, within HGI48_RS02355 at 512.373 kb on + strand at 512.373 kb on + strand, within HGI48_RS02355 at 512.459 kb on - strand, within HGI48_RS02355 at 512.574 kb on + strand, within HGI48_RS02355 at 512.626 kb on - strand at 512.657 kb on + strand at 512.657 kb on + strand at 512.657 kb on + strand at 512.658 kb on - strand at 512.658 kb on - strand at 512.658 kb on - strand at 512.664 kb on + strand at 512.667 kb on - strand at 512.707 kb on - strand at 512.711 kb on + strand at 512.730 kb on + strand at 512.731 kb on - strand at 512.731 kb on - strand at 512.732 kb on + strand at 512.770 kb on + strand at 512.770 kb on + strand at 512.770 kb on + strand at 512.770 kb on + strand at 512.770 kb on + strand at 512.771 kb on - strand at 512.771 kb on - strand at 512.777 kb on + strand at 512.777 kb on + strand at 512.777 kb on + strand at 512.778 kb on - strand at 512.778 kb on - strand at 512.778 kb on - strand at 512.778 kb on - strand at 512.788 kb on + strand at 512.788 kb on + strand at 512.788 kb on + strand at 512.788 kb on + strand at 512.788 kb on + strand at 512.788 kb on + strand at 512.789 kb on - strand at 512.789 kb on - strand at 512.789 kb on - strand at 512.795 kb on + strand at 512.795 kb on + strand at 512.813 kb on + strand at 512.813 kb on + strand at 512.813 kb on + strand at 512.813 kb on + strand at 512.813 kb on + strand at 512.815 kb on + strand at 512.815 kb on + strand at 512.815 kb on + strand at 512.820 kb on + strand at 513.235 kb on - strand at 513.296 kb on + strand at 513.296 kb on + strand at 513.296 kb on + strand at 513.297 kb on - strand at 513.297 kb on - strand at 513.297 kb on - strand at 513.297 kb on - strand at 513.297 kb on - strand at 513.297 kb on - strand at 513.297 kb on - strand at 513.301 kb on + strand at 513.302 kb on - strand at 513.302 kb on - strand at 513.381 kb on + strand at 513.381 kb on + strand at 513.382 kb on - strand at 513.382 kb on - strand at 513.382 kb on - strand at 513.428 kb on - strand at 513.531 kb on + strand at 513.531 kb on + strand at 513.531 kb on + strand at 513.544 kb on + strand at 513.561 kb on - strand at 513.621 kb on + strand at 513.830 kb on + strand, within HGI48_RS02370 at 513.830 kb on + strand, within HGI48_RS02370 at 513.831 kb on - strand, within HGI48_RS02370 at 513.831 kb on - strand, within HGI48_RS02370 at 513.876 kb on + strand, within HGI48_RS02370 at 513.877 kb on - strand, within HGI48_RS02370 at 513.877 kb on - strand, within HGI48_RS02370 at 514.041 kb on - strand, within HGI48_RS02370 at 514.041 kb on - strand, within HGI48_RS02370 at 514.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 511,950 - -0.6 512,033 - -0.9 512,172 + HGI48_RS02355 0.14 +1.1 512,172 + HGI48_RS02355 0.14 -0.0 512,172 + HGI48_RS02355 0.14 -0.6 512,172 + HGI48_RS02355 0.14 +0.5 512,173 - HGI48_RS02355 0.15 -1.6 512,173 - HGI48_RS02355 0.15 -0.0 512,176 + +1.5 512,176 + HGI48_RS02355 0.15 -0.9 512,176 + HGI48_RS02355 0.15 -0.1 512,176 + HGI48_RS02355 0.15 +0.9 512,177 - HGI48_RS02355 0.15 +0.1 512,177 - HGI48_RS02355 0.15 -0.7 512,177 - HGI48_RS02355 0.15 -1.3 512,177 - HGI48_RS02355 0.15 +1.3 512,257 - HGI48_RS02355 0.29 -0.6 512,257 - HGI48_RS02355 0.29 +0.4 512,257 - HGI48_RS02355 0.29 +0.3 512,373 + +0.1 512,373 + HGI48_RS02355 0.49 +0.3 512,459 - HGI48_RS02355 0.63 +0.6 512,574 + HGI48_RS02355 0.83 +0.9 512,626 - +0.7 512,657 + -0.6 512,657 + -2.0 512,657 + -0.5 512,658 - +0.1 512,658 - -1.3 512,658 - +0.5 512,664 + +1.3 512,667 - +0.3 512,707 - -0.7 512,711 + +0.7 512,730 + -0.5 512,731 - +0.1 512,731 - -1.9 512,732 + -0.4 512,770 + +1.9 512,770 + -1.3 512,770 + -0.3 512,770 + -0.5 512,770 + -1.9 512,771 - +1.0 512,771 - -0.1 512,777 + -0.2 512,777 + -0.4 512,777 + -1.6 512,778 - -1.3 512,778 - +0.3 512,778 - -0.9 512,778 - +1.7 512,788 + -1.3 512,788 + +0.1 512,788 + +0.7 512,788 + -0.6 512,788 + -0.3 512,788 + -0.7 512,789 - -1.3 512,789 - +0.1 512,789 - -2.6 512,795 + +0.7 512,795 + -0.7 512,813 + -1.0 512,813 + +2.1 512,813 + -0.6 512,813 + +0.1 512,813 + -0.3 512,815 + +0.2 512,815 + +0.1 512,815 + -0.5 512,820 + -0.5 513,235 - -0.4 513,296 + -1.3 513,296 + -2.1 513,296 + +0.6 513,297 - -0.4 513,297 - -0.4 513,297 - +0.1 513,297 - +0.7 513,297 - +0.2 513,297 - +0.4 513,297 - +0.1 513,301 + -0.0 513,302 - +1.1 513,302 - +0.1 513,381 + +0.6 513,381 + +0.5 513,382 - +0.7 513,382 - -0.0 513,382 - -1.4 513,428 - +1.6 513,531 + -0.3 513,531 + -0.1 513,531 + -0.1 513,544 + +0.4 513,561 - -0.9 513,621 + +2.1 513,830 + HGI48_RS02370 0.41 -1.0 513,830 + HGI48_RS02370 0.41 -1.3 513,831 - HGI48_RS02370 0.42 +0.4 513,831 - HGI48_RS02370 0.42 -0.8 513,876 + HGI48_RS02370 0.49 -0.7 513,877 - HGI48_RS02370 0.49 -0.0 513,877 - HGI48_RS02370 0.49 -0.0 514,041 - HGI48_RS02370 0.76 +1.1 514,041 - HGI48_RS02370 0.76 -2.3 514,193 - -1.3
Or see this region's nucleotide sequence