Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02345

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02340 and HGI48_RS02345 are separated by 21 nucleotidesHGI48_RS02345 and HGI48_RS02350 overlap by 4 nucleotides HGI48_RS02340: HGI48_RS02340 - FAD-dependent 2-octaprenylphenol hydroxylase, at 508,312 to 509,523 _RS02340 HGI48_RS02345: HGI48_RS02345 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 509,545 to 510,723 _RS02345 HGI48_RS02350: HGI48_RS02350 - Xaa-Pro aminopeptidase, at 510,720 to 512,048 _RS02350 Position (kb) 509 510 511Strain fitness (log2 ratio) -2 -1 0 1at 509.524 kb on - strandat 509.524 kb on - strandat 509.524 kb on - strandat 509.581 kb on + strandat 509.581 kb on + strandat 509.582 kb on - strandat 510.890 kb on - strand, within HGI48_RS02350at 510.890 kb on - strand, within HGI48_RS02350at 510.918 kb on - strand, within HGI48_RS02350at 511.008 kb on - strand, within HGI48_RS02350at 511.008 kb on - strand, within HGI48_RS02350at 511.008 kb on - strand, within HGI48_RS02350at 511.184 kb on - strandat 511.332 kb on - strand, within HGI48_RS02350at 511.332 kb on - strand, within HGI48_RS02350at 511.332 kb on - strandat 511.332 kb on - strand, within HGI48_RS02350at 511.367 kb on - strand, within HGI48_RS02350at 511.367 kb on - strand, within HGI48_RS02350at 511.367 kb on - strand, within HGI48_RS02350at 511.527 kb on - strandat 511.527 kb on - strand, within HGI48_RS02350at 511.527 kb on - strand, within HGI48_RS02350at 511.527 kb on - strand, within HGI48_RS02350at 511.539 kb on - strand, within HGI48_RS02350at 511.539 kb on - strand, within HGI48_RS02350at 511.539 kb on - strand, within HGI48_RS02350at 511.546 kb on - strand, within HGI48_RS02350at 511.649 kb on - strand, within HGI48_RS02350at 511.649 kb on - strand, within HGI48_RS02350at 511.655 kb on - strand, within HGI48_RS02350at 511.673 kb on - strand, within HGI48_RS02350

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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509,524 - -2.3
509,524 - +0.1
509,524 - +0.1
509,581 + +1.1
509,581 + -1.6
509,582 - +0.4
510,890 - HGI48_RS02350 0.13 -1.1
510,890 - HGI48_RS02350 0.13 +0.7
510,918 - HGI48_RS02350 0.15 +1.1
511,008 - HGI48_RS02350 0.22 -0.3
511,008 - HGI48_RS02350 0.22 -1.3
511,008 - HGI48_RS02350 0.22 +0.1
511,184 - +0.1
511,332 - HGI48_RS02350 0.46 -1.1
511,332 - HGI48_RS02350 0.46 +1.2
511,332 - +1.5
511,332 - HGI48_RS02350 0.46 +0.7
511,367 - HGI48_RS02350 0.49 +0.4
511,367 - HGI48_RS02350 0.49 -0.3
511,367 - HGI48_RS02350 0.49 -1.9
511,527 - -0.9
511,527 - HGI48_RS02350 0.61 -1.0
511,527 - HGI48_RS02350 0.61 -2.1
511,527 - HGI48_RS02350 0.61 -1.1
511,539 - HGI48_RS02350 0.62 +0.7
511,539 - HGI48_RS02350 0.62 -0.1
511,539 - HGI48_RS02350 0.62 +0.5
511,546 - HGI48_RS02350 0.62 -0.1
511,649 - HGI48_RS02350 0.70 -1.1
511,649 - HGI48_RS02350 0.70 -0.1
511,655 - HGI48_RS02350 0.70 -0.1
511,673 - HGI48_RS02350 0.72 -0.3

Or see this region's nucleotide sequence