Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02330

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02325 and HGI48_RS02330 are separated by 53 nucleotidesHGI48_RS02330 and HGI48_RS02335 are separated by 716 nucleotides HGI48_RS02325: HGI48_RS02325 - LysE family translocator, at 505,141 to 505,776 _RS02325 HGI48_RS02330: HGI48_RS02330 - hypothetical protein, at 505,830 to 506,558 _RS02330 HGI48_RS02335: HGI48_RS02335 - DUF1440 domain-containing protein, at 507,275 to 507,817 _RS02335 Position (kb) 505 506 507Strain fitness (log2 ratio) -2 -1 0 1 2at 504.837 kb on - strandat 504.837 kb on - strandat 504.901 kb on + strandat 504.933 kb on + strandat 504.934 kb on - strandat 505.009 kb on + strandat 505.012 kb on + strandat 505.013 kb on - strandat 505.014 kb on + strandat 505.014 kb on + strandat 505.015 kb on - strandat 505.015 kb on - strandat 505.025 kb on - strandat 505.106 kb on + strandat 505.224 kb on - strand, within HGI48_RS02325at 505.280 kb on + strand, within HGI48_RS02325at 505.281 kb on - strand, within HGI48_RS02325at 505.282 kb on + strandat 505.283 kb on - strandat 505.325 kb on - strand, within HGI48_RS02325at 505.327 kb on + strand, within HGI48_RS02325at 505.365 kb on + strand, within HGI48_RS02325at 505.471 kb on + strand, within HGI48_RS02325at 505.557 kb on + strandat 505.686 kb on + strand, within HGI48_RS02325at 505.708 kb on + strand, within HGI48_RS02325at 505.708 kb on + strand, within HGI48_RS02325at 505.758 kb on - strandat 505.758 kb on - strandat 505.759 kb on + strandat 505.912 kb on - strand, within HGI48_RS02330at 505.926 kb on - strand, within HGI48_RS02330at 505.937 kb on - strand, within HGI48_RS02330at 506.038 kb on - strand, within HGI48_RS02330at 506.078 kb on - strand, within HGI48_RS02330at 506.272 kb on + strand, within HGI48_RS02330at 506.309 kb on + strand, within HGI48_RS02330at 506.358 kb on - strand, within HGI48_RS02330at 506.360 kb on + strand, within HGI48_RS02330at 506.360 kb on + strand, within HGI48_RS02330at 506.361 kb on - strand, within HGI48_RS02330at 506.387 kb on - strand, within HGI48_RS02330at 506.496 kb on + strandat 506.555 kb on - strandat 506.559 kb on - strandat 506.596 kb on - strandat 506.628 kb on - strandat 506.648 kb on - strandat 506.661 kb on + strandat 506.947 kb on - strandat 507.001 kb on + strandat 507.024 kb on + strandat 507.024 kb on + strandat 507.024 kb on + strandat 507.025 kb on - strandat 507.038 kb on - strandat 507.081 kb on + strandat 507.169 kb on + strandat 507.169 kb on + strandat 507.170 kb on - strandat 507.211 kb on + strandat 507.211 kb on + strandat 507.212 kb on - strandat 507.212 kb on - strandat 507.302 kb on - strandat 507.302 kb on - strandat 507.322 kb on + strandat 507.376 kb on + strand, within HGI48_RS02335at 507.376 kb on + strand, within HGI48_RS02335at 507.376 kb on + strand, within HGI48_RS02335at 507.376 kb on + strand, within HGI48_RS02335at 507.376 kb on + strand, within HGI48_RS02335at 507.376 kb on + strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.544 kb on - strand, within HGI48_RS02335at 507.544 kb on - strandat 507.553 kb on + strand, within HGI48_RS02335at 507.554 kb on - strand, within HGI48_RS02335

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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504,837 - -0.8
504,837 - -1.3
504,901 + -2.1
504,933 + +0.3
504,934 - +0.3
505,009 + -0.6
505,012 + +0.0
505,013 - -0.1
505,014 + -0.3
505,014 + -0.3
505,015 - +0.2
505,015 - -0.3
505,025 - +0.7
505,106 + -0.0
505,224 - HGI48_RS02325 0.13 -0.3
505,280 + HGI48_RS02325 0.22 -0.3
505,281 - HGI48_RS02325 0.22 +0.6
505,282 + +0.7
505,283 - +1.3
505,325 - HGI48_RS02325 0.29 -0.9
505,327 + HGI48_RS02325 0.29 +0.1
505,365 + HGI48_RS02325 0.35 -1.8
505,471 + HGI48_RS02325 0.52 +0.3
505,557 + +1.5
505,686 + HGI48_RS02325 0.86 -1.1
505,708 + HGI48_RS02325 0.89 -0.1
505,708 + HGI48_RS02325 0.89 +0.0
505,758 - +0.6
505,758 - -0.6
505,759 + +0.3
505,912 - HGI48_RS02330 0.11 -0.9
505,926 - HGI48_RS02330 0.13 +0.4
505,937 - HGI48_RS02330 0.15 +0.3
506,038 - HGI48_RS02330 0.29 -0.9
506,078 - HGI48_RS02330 0.34 -0.3
506,272 + HGI48_RS02330 0.61 +0.3
506,309 + HGI48_RS02330 0.66 -1.0
506,358 - HGI48_RS02330 0.72 -0.3
506,360 + HGI48_RS02330 0.73 -0.9
506,360 + HGI48_RS02330 0.73 +1.0
506,361 - HGI48_RS02330 0.73 -0.3
506,387 - HGI48_RS02330 0.76 +0.2
506,496 + -1.3
506,555 - -0.9
506,559 - -0.6
506,596 - -0.2
506,628 - -1.6
506,648 - -0.4
506,661 + +0.4
506,947 - -0.3
507,001 + +2.1
507,024 + -0.6
507,024 + +0.1
507,024 + +1.0
507,025 - -0.2
507,038 - +0.3
507,081 + -0.7
507,169 + -0.7
507,169 + -1.5
507,170 - +0.0
507,211 + +0.1
507,211 + -0.3
507,212 - -0.0
507,212 - +0.6
507,302 - -1.3
507,302 - -1.9
507,322 + -0.3
507,376 + HGI48_RS02335 0.19 +0.6
507,376 + HGI48_RS02335 0.19 +0.2
507,376 + HGI48_RS02335 0.19 +0.5
507,376 + HGI48_RS02335 0.19 -0.4
507,376 + HGI48_RS02335 0.19 -1.4
507,376 + HGI48_RS02335 0.19 -1.9
507,377 - HGI48_RS02335 0.19 +0.7
507,377 - HGI48_RS02335 0.19 +2.1
507,377 - HGI48_RS02335 0.19 -0.3
507,377 - HGI48_RS02335 0.19 +1.3
507,377 - HGI48_RS02335 0.19 +0.5
507,377 - HGI48_RS02335 0.19 -0.3
507,377 - HGI48_RS02335 0.19 -1.3
507,377 - HGI48_RS02335 0.19 +0.6
507,377 - HGI48_RS02335 0.19 -0.3
507,377 - HGI48_RS02335 0.19 +0.7
507,377 - HGI48_RS02335 0.19 -0.8
507,377 - HGI48_RS02335 0.19 +0.5
507,544 - HGI48_RS02335 0.50 -1.2
507,544 - -0.3
507,553 + HGI48_RS02335 0.51 +0.2
507,554 - HGI48_RS02335 0.51 -0.7

Or see this region's nucleotide sequence