Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02060 and HGI48_RS02065 are separated by 22 nucleotides HGI48_RS02065 and HGI48_RS02070 are separated by 406 nucleotides
HGI48_RS02060: HGI48_RS02060 - type II toxin-antitoxin system HipA family toxin, at 451,784 to 452,839
_RS02060
HGI48_RS02065: HGI48_RS02065 - DUF1778 domain-containing protein, at 452,862 to 453,134
_RS02065
HGI48_RS02070: HGI48_RS02070 - hypothetical protein, at 453,541 to 454,929
_RS02070
Position (kb) 452
453
454 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 451.872 kb on - strand at 451.903 kb on + strand, within HGI48_RS02060 at 451.903 kb on + strand at 451.904 kb on - strand, within HGI48_RS02060 at 451.904 kb on - strand, within HGI48_RS02060 at 451.904 kb on - strand at 451.904 kb on - strand, within HGI48_RS02060 at 451.904 kb on - strand at 451.905 kb on + strand at 451.905 kb on + strand, within HGI48_RS02060 at 451.905 kb on + strand, within HGI48_RS02060 at 451.905 kb on + strand, within HGI48_RS02060 at 451.906 kb on - strand, within HGI48_RS02060 at 451.906 kb on - strand, within HGI48_RS02060 at 451.906 kb on - strand, within HGI48_RS02060 at 451.913 kb on - strand, within HGI48_RS02060 at 451.913 kb on - strand, within HGI48_RS02060 at 451.915 kb on + strand, within HGI48_RS02060 at 451.916 kb on - strand, within HGI48_RS02060 at 451.916 kb on - strand, within HGI48_RS02060 at 451.916 kb on - strand, within HGI48_RS02060 at 451.929 kb on + strand, within HGI48_RS02060 at 451.930 kb on - strand, within HGI48_RS02060 at 451.952 kb on - strand at 452.002 kb on - strand, within HGI48_RS02060 at 452.038 kb on + strand, within HGI48_RS02060 at 452.038 kb on + strand, within HGI48_RS02060 at 452.038 kb on + strand, within HGI48_RS02060 at 452.039 kb on - strand, within HGI48_RS02060 at 452.039 kb on - strand, within HGI48_RS02060 at 452.039 kb on - strand at 452.041 kb on + strand, within HGI48_RS02060 at 452.042 kb on - strand, within HGI48_RS02060 at 452.056 kb on + strand, within HGI48_RS02060 at 452.067 kb on + strand, within HGI48_RS02060 at 452.068 kb on - strand, within HGI48_RS02060 at 452.089 kb on + strand, within HGI48_RS02060 at 452.090 kb on - strand, within HGI48_RS02060 at 452.090 kb on - strand, within HGI48_RS02060 at 452.102 kb on - strand, within HGI48_RS02060 at 452.107 kb on + strand, within HGI48_RS02060 at 452.107 kb on + strand, within HGI48_RS02060 at 452.107 kb on + strand, within HGI48_RS02060 at 452.107 kb on + strand at 452.107 kb on + strand, within HGI48_RS02060 at 452.107 kb on + strand, within HGI48_RS02060 at 452.107 kb on + strand, within HGI48_RS02060 at 452.107 kb on + strand at 452.108 kb on - strand, within HGI48_RS02060 at 452.108 kb on - strand at 452.130 kb on + strand, within HGI48_RS02060 at 452.278 kb on + strand, within HGI48_RS02060 at 452.278 kb on + strand, within HGI48_RS02060 at 452.278 kb on + strand at 452.278 kb on + strand, within HGI48_RS02060 at 452.279 kb on - strand, within HGI48_RS02060 at 452.279 kb on - strand, within HGI48_RS02060 at 452.279 kb on - strand, within HGI48_RS02060 at 452.279 kb on - strand, within HGI48_RS02060 at 452.279 kb on - strand, within HGI48_RS02060 at 452.279 kb on - strand at 452.338 kb on + strand, within HGI48_RS02060 at 452.358 kb on + strand at 452.358 kb on + strand, within HGI48_RS02060 at 452.358 kb on + strand, within HGI48_RS02060 at 452.497 kb on + strand, within HGI48_RS02060 at 452.497 kb on + strand, within HGI48_RS02060 at 452.497 kb on + strand, within HGI48_RS02060 at 452.498 kb on - strand, within HGI48_RS02060 at 452.498 kb on - strand, within HGI48_RS02060 at 452.498 kb on - strand, within HGI48_RS02060 at 452.507 kb on + strand, within HGI48_RS02060 at 452.508 kb on - strand, within HGI48_RS02060 at 452.508 kb on - strand, within HGI48_RS02060 at 452.518 kb on - strand, within HGI48_RS02060 at 452.548 kb on + strand, within HGI48_RS02060 at 452.602 kb on + strand, within HGI48_RS02060 at 452.602 kb on + strand, within HGI48_RS02060 at 452.606 kb on + strand, within HGI48_RS02060 at 452.606 kb on + strand, within HGI48_RS02060 at 452.607 kb on - strand, within HGI48_RS02060 at 452.607 kb on - strand, within HGI48_RS02060 at 452.607 kb on - strand, within HGI48_RS02060 at 452.607 kb on - strand, within HGI48_RS02060 at 452.607 kb on - strand, within HGI48_RS02060 at 452.689 kb on + strand, within HGI48_RS02060 at 452.690 kb on - strand at 452.690 kb on - strand at 452.690 kb on - strand, within HGI48_RS02060 at 452.690 kb on - strand, within HGI48_RS02060 at 452.704 kb on + strand, within HGI48_RS02060 at 452.704 kb on + strand, within HGI48_RS02060 at 452.705 kb on - strand, within HGI48_RS02060 at 452.725 kb on + strand, within HGI48_RS02060 at 452.737 kb on - strand at 452.766 kb on + strand at 452.766 kb on + strand at 452.794 kb on + strand at 452.794 kb on + strand at 452.795 kb on - strand at 452.833 kb on + strand at 452.833 kb on + strand at 452.834 kb on - strand at 452.834 kb on - strand at 452.838 kb on - strand at 452.890 kb on - strand, within HGI48_RS02065 at 452.909 kb on + strand, within HGI48_RS02065 at 452.950 kb on + strand, within HGI48_RS02065 at 452.950 kb on + strand at 452.951 kb on - strand, within HGI48_RS02065 at 452.951 kb on - strand, within HGI48_RS02065 at 452.951 kb on - strand, within HGI48_RS02065 at 452.951 kb on - strand, within HGI48_RS02065 at 452.981 kb on + strand, within HGI48_RS02065 at 452.982 kb on - strand, within HGI48_RS02065 at 453.027 kb on - strand, within HGI48_RS02065 at 453.101 kb on + strand, within HGI48_RS02065 at 453.101 kb on + strand, within HGI48_RS02065 at 453.102 kb on - strand, within HGI48_RS02065 at 453.104 kb on + strand, within HGI48_RS02065 at 453.150 kb on + strand at 453.157 kb on + strand at 453.158 kb on - strand at 453.200 kb on - strand at 453.202 kb on + strand at 453.202 kb on + strand at 453.202 kb on + strand at 453.202 kb on + strand at 453.202 kb on + strand at 453.202 kb on + strand at 453.203 kb on - strand at 453.203 kb on - strand at 453.203 kb on - strand at 453.203 kb on - strand at 453.203 kb on - strand at 453.203 kb on - strand at 453.203 kb on - strand at 453.253 kb on - strand at 453.275 kb on + strand at 453.276 kb on - strand at 453.280 kb on + strand at 453.281 kb on - strand at 453.281 kb on - strand at 453.281 kb on - strand at 453.307 kb on - strand at 453.369 kb on + strand at 453.369 kb on + strand at 453.394 kb on + strand at 453.394 kb on + strand at 453.394 kb on + strand at 453.395 kb on - strand at 453.395 kb on - strand at 453.395 kb on - strand at 453.395 kb on - strand at 453.395 kb on - strand at 453.395 kb on - strand at 453.401 kb on + strand at 453.402 kb on - strand at 453.402 kb on - strand at 453.402 kb on - strand at 453.402 kb on - strand at 453.402 kb on - strand at 453.402 kb on - strand at 453.424 kb on + strand at 453.454 kb on + strand at 453.606 kb on - strand at 453.614 kb on + strand at 453.614 kb on + strand at 453.615 kb on - strand at 453.617 kb on + strand at 453.618 kb on - strand at 453.636 kb on + strand at 453.636 kb on + strand at 453.636 kb on + strand at 453.637 kb on - strand at 453.692 kb on + strand, within HGI48_RS02070 at 453.692 kb on + strand, within HGI48_RS02070 at 453.712 kb on + strand, within HGI48_RS02070 at 453.713 kb on - strand, within HGI48_RS02070 at 453.713 kb on - strand, within HGI48_RS02070 at 453.713 kb on - strand, within HGI48_RS02070 at 453.748 kb on + strand, within HGI48_RS02070 at 453.749 kb on - strand, within HGI48_RS02070 at 453.749 kb on - strand, within HGI48_RS02070 at 453.749 kb on - strand, within HGI48_RS02070 at 453.751 kb on + strand, within HGI48_RS02070 at 453.751 kb on + strand, within HGI48_RS02070 at 454.003 kb on + strand, within HGI48_RS02070 at 454.004 kb on - strand, within HGI48_RS02070
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 451,872 - +1.1 451,903 + HGI48_RS02060 0.11 -0.2 451,903 + +2.6 451,904 - HGI48_RS02060 0.11 -0.3 451,904 - HGI48_RS02060 0.11 -0.7 451,904 - +1.2 451,904 - HGI48_RS02060 0.11 +1.0 451,904 - +1.4 451,905 + +0.2 451,905 + HGI48_RS02060 0.11 +0.2 451,905 + HGI48_RS02060 0.11 -0.7 451,905 + HGI48_RS02060 0.11 +0.5 451,906 - HGI48_RS02060 0.12 +0.8 451,906 - HGI48_RS02060 0.12 -0.2 451,906 - HGI48_RS02060 0.12 -0.4 451,913 - HGI48_RS02060 0.12 +0.3 451,913 - HGI48_RS02060 0.12 -1.5 451,915 + HGI48_RS02060 0.12 -1.2 451,916 - HGI48_RS02060 0.12 +0.2 451,916 - HGI48_RS02060 0.12 -1.5 451,916 - HGI48_RS02060 0.12 -1.2 451,929 + HGI48_RS02060 0.14 +0.2 451,930 - HGI48_RS02060 0.14 +0.5 451,952 - +0.2 452,002 - HGI48_RS02060 0.21 +0.0 452,038 + HGI48_RS02060 0.24 -0.9 452,038 + HGI48_RS02060 0.24 +0.4 452,038 + HGI48_RS02060 0.24 +0.5 452,039 - HGI48_RS02060 0.24 -1.5 452,039 - HGI48_RS02060 0.24 -0.5 452,039 - +1.2 452,041 + HGI48_RS02060 0.24 +0.2 452,042 - HGI48_RS02060 0.24 +0.8 452,056 + HGI48_RS02060 0.26 -0.3 452,067 + HGI48_RS02060 0.27 -1.2 452,068 - HGI48_RS02060 0.27 +1.0 452,089 + HGI48_RS02060 0.29 +0.2 452,090 - HGI48_RS02060 0.29 +0.5 452,090 - HGI48_RS02060 0.29 +0.6 452,102 - HGI48_RS02060 0.30 +0.1 452,107 + HGI48_RS02060 0.31 -0.5 452,107 + HGI48_RS02060 0.31 +0.4 452,107 + HGI48_RS02060 0.31 -0.8 452,107 + +0.8 452,107 + HGI48_RS02060 0.31 +0.8 452,107 + HGI48_RS02060 0.31 +0.2 452,107 + HGI48_RS02060 0.31 -0.2 452,107 + -0.2 452,108 - HGI48_RS02060 0.31 -1.5 452,108 - -0.2 452,130 + HGI48_RS02060 0.33 +0.0 452,278 + HGI48_RS02060 0.47 -0.8 452,278 + HGI48_RS02060 0.47 -0.2 452,278 + +1.4 452,278 + HGI48_RS02060 0.47 -1.2 452,279 - HGI48_RS02060 0.47 -0.2 452,279 - HGI48_RS02060 0.47 +0.8 452,279 - HGI48_RS02060 0.47 +0.0 452,279 - HGI48_RS02060 0.47 -1.5 452,279 - HGI48_RS02060 0.47 -1.3 452,279 - +0.8 452,338 + HGI48_RS02060 0.52 +1.3 452,358 + +0.8 452,358 + HGI48_RS02060 0.54 -0.0 452,358 + HGI48_RS02060 0.54 -0.4 452,497 + HGI48_RS02060 0.68 -1.5 452,497 + HGI48_RS02060 0.68 +0.1 452,497 + HGI48_RS02060 0.68 +0.0 452,498 - HGI48_RS02060 0.68 -2.0 452,498 - HGI48_RS02060 0.68 -0.1 452,498 - HGI48_RS02060 0.68 +0.5 452,507 + HGI48_RS02060 0.68 -2.4 452,508 - HGI48_RS02060 0.69 +1.0 452,508 - HGI48_RS02060 0.69 +0.8 452,518 - HGI48_RS02060 0.70 +0.6 452,548 + HGI48_RS02060 0.72 -0.2 452,602 + HGI48_RS02060 0.77 -0.2 452,602 + HGI48_RS02060 0.77 -0.8 452,606 + HGI48_RS02060 0.78 -0.5 452,606 + HGI48_RS02060 0.78 +0.1 452,607 - HGI48_RS02060 0.78 +0.2 452,607 - HGI48_RS02060 0.78 -0.4 452,607 - HGI48_RS02060 0.78 -1.2 452,607 - HGI48_RS02060 0.78 +0.4 452,607 - HGI48_RS02060 0.78 +0.4 452,689 + HGI48_RS02060 0.86 -1.0 452,690 - -0.2 452,690 - +0.8 452,690 - HGI48_RS02060 0.86 -0.4 452,690 - HGI48_RS02060 0.86 -1.5 452,704 + HGI48_RS02060 0.87 -0.0 452,704 + HGI48_RS02060 0.87 +0.3 452,705 - HGI48_RS02060 0.87 -1.2 452,725 + HGI48_RS02060 0.89 +0.1 452,737 - +0.2 452,766 + -0.8 452,766 + +1.0 452,794 + -0.4 452,794 + +0.1 452,795 - -0.8 452,833 + -1.2 452,833 + -0.7 452,834 - -0.0 452,834 - -0.5 452,838 - +0.8 452,890 - HGI48_RS02065 0.10 -0.8 452,909 + HGI48_RS02065 0.17 -0.2 452,950 + HGI48_RS02065 0.32 -0.8 452,950 + +1.2 452,951 - HGI48_RS02065 0.33 -1.5 452,951 - HGI48_RS02065 0.33 -1.3 452,951 - HGI48_RS02065 0.33 -1.5 452,951 - HGI48_RS02065 0.33 -0.8 452,981 + HGI48_RS02065 0.44 +1.5 452,982 - HGI48_RS02065 0.44 -1.4 453,027 - HGI48_RS02065 0.60 -1.8 453,101 + HGI48_RS02065 0.88 -0.2 453,101 + HGI48_RS02065 0.88 -1.5 453,102 - HGI48_RS02065 0.88 -2.0 453,104 + HGI48_RS02065 0.89 -1.0 453,150 + +0.3 453,157 + -0.0 453,158 - -1.1 453,200 - +0.1 453,202 + -0.2 453,202 + -0.1 453,202 + +0.2 453,202 + -0.0 453,202 + +0.4 453,202 + -0.8 453,203 - +0.1 453,203 - +0.8 453,203 - -1.0 453,203 - -0.2 453,203 - +0.4 453,203 - +0.6 453,203 - -1.4 453,253 - +0.7 453,275 + -0.5 453,276 - +1.0 453,280 + +0.8 453,281 - -0.6 453,281 - +0.5 453,281 - -1.5 453,307 - +2.0 453,369 + -1.2 453,369 + +0.8 453,394 + +1.1 453,394 + -0.2 453,394 + -0.4 453,395 - +0.9 453,395 - -0.0 453,395 - +0.0 453,395 - -0.0 453,395 - -0.2 453,395 - +1.5 453,401 + +1.1 453,402 - -1.8 453,402 - -0.4 453,402 - +1.1 453,402 - -0.1 453,402 - -0.1 453,402 - +2.8 453,424 + +0.2 453,454 + -0.4 453,606 - +0.6 453,614 + +1.2 453,614 + -0.2 453,615 - +1.2 453,617 + -0.1 453,618 - -2.4 453,636 + -0.8 453,636 + +0.2 453,636 + -1.5 453,637 - +0.2 453,692 + HGI48_RS02070 0.11 -1.2 453,692 + HGI48_RS02070 0.11 -0.0 453,712 + HGI48_RS02070 0.12 -0.3 453,713 - HGI48_RS02070 0.12 +1.0 453,713 - HGI48_RS02070 0.12 +0.1 453,713 - HGI48_RS02070 0.12 -0.0 453,748 + HGI48_RS02070 0.15 +0.9 453,749 - HGI48_RS02070 0.15 -2.0 453,749 - HGI48_RS02070 0.15 +0.5 453,749 - HGI48_RS02070 0.15 -1.2 453,751 + HGI48_RS02070 0.15 -0.6 453,751 + HGI48_RS02070 0.15 -1.0 454,003 + HGI48_RS02070 0.33 -1.3 454,004 - HGI48_RS02070 0.33 +1.2
Or see this region's nucleotide sequence