Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01860 and HGI48_RS01865 overlap by 4 nucleotides HGI48_RS01865 and HGI48_RS01870 overlap by 7 nucleotides HGI48_RS01870 and HGI48_RS01875 are separated by 391 nucleotides HGI48_RS01875 and HGI48_RS01880 overlap by 32 nucleotides
HGI48_RS01860: HGI48_RS01860 - transglutaminase family protein, at 413,565 to 414,392
_RS01860
HGI48_RS01865: HGI48_RS01865 - alpha-E domain-containing protein, at 414,389 to 415,318
_RS01865
HGI48_RS01870: HGI48_RS01870 - circularly permuted type 2 ATP-grasp protein, at 415,312 to 416,751
_RS01870
HGI48_RS01875: HGI48_RS01875 - ParD-like family protein, at 417,143 to 417,379
_RS01875
HGI48_RS01880: HGI48_RS01880 - type II toxin-antitoxin system RelE/ParE family toxin, at 417,348 to 417,677
_RS01880
Position (kb) 415
416
417 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 414.326 kb on - strand at 414.326 kb on - strand at 414.406 kb on - strand at 414.406 kb on - strand at 414.409 kb on + strand at 414.410 kb on - strand at 414.410 kb on - strand at 414.410 kb on - strand at 414.410 kb on - strand at 414.463 kb on - strand at 414.628 kb on + strand, within HGI48_RS01865 at 414.629 kb on - strand, within HGI48_RS01865 at 414.629 kb on - strand, within HGI48_RS01865 at 414.632 kb on + strand at 414.633 kb on - strand, within HGI48_RS01865 at 414.633 kb on - strand, within HGI48_RS01865 at 414.633 kb on - strand, within HGI48_RS01865 at 414.633 kb on - strand, within HGI48_RS01865 at 414.678 kb on + strand at 414.679 kb on - strand, within HGI48_RS01865 at 414.690 kb on + strand, within HGI48_RS01865 at 414.716 kb on + strand, within HGI48_RS01865 at 414.736 kb on - strand, within HGI48_RS01865 at 414.738 kb on + strand, within HGI48_RS01865 at 414.739 kb on - strand, within HGI48_RS01865 at 414.739 kb on - strand, within HGI48_RS01865 at 414.965 kb on - strand, within HGI48_RS01865 at 415.057 kb on + strand at 415.065 kb on + strand, within HGI48_RS01865 at 415.065 kb on + strand, within HGI48_RS01865 at 415.065 kb on + strand at 415.065 kb on + strand, within HGI48_RS01865 at 415.065 kb on + strand, within HGI48_RS01865 at 415.065 kb on + strand, within HGI48_RS01865 at 415.065 kb on + strand, within HGI48_RS01865 at 415.065 kb on + strand, within HGI48_RS01865 at 415.066 kb on - strand at 415.066 kb on - strand, within HGI48_RS01865 at 415.066 kb on - strand, within HGI48_RS01865 at 415.066 kb on - strand, within HGI48_RS01865 at 415.066 kb on - strand, within HGI48_RS01865 at 415.066 kb on - strand, within HGI48_RS01865 at 415.066 kb on - strand, within HGI48_RS01865 at 415.066 kb on - strand, within HGI48_RS01865 at 415.134 kb on + strand, within HGI48_RS01865 at 415.135 kb on - strand, within HGI48_RS01865 at 415.159 kb on + strand, within HGI48_RS01865 at 415.159 kb on + strand, within HGI48_RS01865 at 415.159 kb on + strand, within HGI48_RS01865 at 415.230 kb on + strand at 415.230 kb on + strand at 415.230 kb on + strand at 415.230 kb on + strand at 415.230 kb on + strand at 415.230 kb on + strand at 415.230 kb on + strand at 415.231 kb on - strand at 415.231 kb on - strand at 415.231 kb on - strand at 415.290 kb on + strand at 415.291 kb on - strand at 415.313 kb on + strand at 415.313 kb on + strand at 415.314 kb on - strand at 415.445 kb on + strand at 415.541 kb on + strand, within HGI48_RS01870 at 415.541 kb on + strand, within HGI48_RS01870 at 415.541 kb on + strand, within HGI48_RS01870 at 415.541 kb on + strand, within HGI48_RS01870 at 415.541 kb on + strand, within HGI48_RS01870 at 415.541 kb on + strand, within HGI48_RS01870 at 415.542 kb on - strand, within HGI48_RS01870 at 415.542 kb on - strand, within HGI48_RS01870 at 415.749 kb on - strand, within HGI48_RS01870 at 415.772 kb on + strand, within HGI48_RS01870 at 415.772 kb on + strand, within HGI48_RS01870 at 415.772 kb on + strand, within HGI48_RS01870 at 415.772 kb on + strand, within HGI48_RS01870 at 415.772 kb on + strand, within HGI48_RS01870 at 415.772 kb on + strand, within HGI48_RS01870 at 415.772 kb on + strand, within HGI48_RS01870 at 415.772 kb on + strand, within HGI48_RS01870 at 415.773 kb on - strand, within HGI48_RS01870 at 415.773 kb on - strand, within HGI48_RS01870 at 415.778 kb on + strand, within HGI48_RS01870 at 415.779 kb on - strand, within HGI48_RS01870 at 415.845 kb on - strand, within HGI48_RS01870 at 415.932 kb on + strand, within HGI48_RS01870 at 415.933 kb on - strand, within HGI48_RS01870 at 415.970 kb on + strand, within HGI48_RS01870 at 415.970 kb on + strand, within HGI48_RS01870 at 415.970 kb on + strand, within HGI48_RS01870 at 415.970 kb on + strand, within HGI48_RS01870 at 415.971 kb on - strand, within HGI48_RS01870 at 415.971 kb on - strand, within HGI48_RS01870 at 415.971 kb on - strand, within HGI48_RS01870 at 416.054 kb on + strand, within HGI48_RS01870 at 416.084 kb on - strand, within HGI48_RS01870 at 416.112 kb on + strand, within HGI48_RS01870 at 416.138 kb on + strand, within HGI48_RS01870 at 416.138 kb on + strand, within HGI48_RS01870 at 416.138 kb on + strand, within HGI48_RS01870 at 416.139 kb on - strand, within HGI48_RS01870 at 416.228 kb on + strand, within HGI48_RS01870 at 416.228 kb on + strand, within HGI48_RS01870 at 416.228 kb on + strand, within HGI48_RS01870 at 416.228 kb on + strand, within HGI48_RS01870 at 416.228 kb on + strand, within HGI48_RS01870 at 416.228 kb on + strand, within HGI48_RS01870 at 416.228 kb on + strand, within HGI48_RS01870 at 416.228 kb on + strand, within HGI48_RS01870 at 416.229 kb on - strand, within HGI48_RS01870 at 416.256 kb on + strand, within HGI48_RS01870 at 416.270 kb on + strand, within HGI48_RS01870 at 416.270 kb on + strand, within HGI48_RS01870 at 416.270 kb on + strand at 416.270 kb on + strand, within HGI48_RS01870 at 416.270 kb on + strand, within HGI48_RS01870 at 416.271 kb on - strand, within HGI48_RS01870 at 416.271 kb on - strand, within HGI48_RS01870 at 416.271 kb on - strand at 416.271 kb on - strand, within HGI48_RS01870 at 416.271 kb on - strand, within HGI48_RS01870 at 416.273 kb on + strand, within HGI48_RS01870 at 416.273 kb on + strand, within HGI48_RS01870 at 416.273 kb on + strand, within HGI48_RS01870 at 416.274 kb on - strand, within HGI48_RS01870 at 416.274 kb on - strand, within HGI48_RS01870 at 416.274 kb on - strand, within HGI48_RS01870 at 416.299 kb on - strand, within HGI48_RS01870 at 416.299 kb on - strand, within HGI48_RS01870 at 416.299 kb on - strand, within HGI48_RS01870 at 416.321 kb on + strand, within HGI48_RS01870 at 416.321 kb on + strand, within HGI48_RS01870 at 416.322 kb on - strand, within HGI48_RS01870 at 416.325 kb on + strand, within HGI48_RS01870 at 416.325 kb on + strand, within HGI48_RS01870 at 416.326 kb on - strand, within HGI48_RS01870 at 416.326 kb on - strand, within HGI48_RS01870 at 416.364 kb on - strand, within HGI48_RS01870 at 416.429 kb on + strand, within HGI48_RS01870 at 416.430 kb on - strand, within HGI48_RS01870 at 416.430 kb on - strand, within HGI48_RS01870 at 416.433 kb on + strand, within HGI48_RS01870 at 416.433 kb on + strand, within HGI48_RS01870 at 416.433 kb on + strand, within HGI48_RS01870 at 416.434 kb on - strand, within HGI48_RS01870 at 416.434 kb on - strand, within HGI48_RS01870 at 416.490 kb on + strand, within HGI48_RS01870 at 416.490 kb on + strand, within HGI48_RS01870 at 416.490 kb on + strand, within HGI48_RS01870 at 416.490 kb on + strand, within HGI48_RS01870 at 416.490 kb on + strand at 416.490 kb on + strand, within HGI48_RS01870 at 416.491 kb on - strand, within HGI48_RS01870 at 416.491 kb on - strand, within HGI48_RS01870 at 416.526 kb on + strand, within HGI48_RS01870 at 416.526 kb on + strand, within HGI48_RS01870 at 416.527 kb on - strand, within HGI48_RS01870 at 416.567 kb on + strand, within HGI48_RS01870 at 416.567 kb on + strand, within HGI48_RS01870 at 416.574 kb on + strand, within HGI48_RS01870 at 416.580 kb on + strand, within HGI48_RS01870 at 416.675 kb on + strand at 416.675 kb on + strand at 416.676 kb on - strand at 416.676 kb on - strand at 416.717 kb on + strand at 416.717 kb on + strand at 416.717 kb on + strand at 416.717 kb on + strand at 416.717 kb on + strand at 416.718 kb on - strand at 416.718 kb on - strand at 416.718 kb on - strand at 416.721 kb on - strand at 416.783 kb on + strand at 416.783 kb on + strand at 416.783 kb on + strand at 416.784 kb on - strand at 416.784 kb on - strand at 416.804 kb on - strand at 416.829 kb on + strand at 416.829 kb on + strand at 416.829 kb on + strand at 416.829 kb on + strand at 416.830 kb on - strand at 416.830 kb on - strand at 416.872 kb on - strand at 416.872 kb on - strand at 416.914 kb on - strand at 416.968 kb on + strand at 416.968 kb on + strand at 416.968 kb on + strand at 416.968 kb on + strand at 416.969 kb on - strand at 416.969 kb on - strand at 416.969 kb on - strand at 416.975 kb on + strand at 416.975 kb on + strand at 416.975 kb on + strand at 416.975 kb on + strand at 416.975 kb on + strand at 416.976 kb on - strand at 416.978 kb on + strand at 416.979 kb on - strand at 416.979 kb on - strand at 416.979 kb on - strand at 417.041 kb on + strand at 417.041 kb on + strand at 417.042 kb on - strand at 417.042 kb on - strand at 417.048 kb on + strand at 417.048 kb on + strand at 417.049 kb on - strand at 417.127 kb on + strand at 417.347 kb on + strand at 417.348 kb on - strand at 417.384 kb on + strand, within HGI48_RS01880 at 417.442 kb on + strand, within HGI48_RS01880 at 417.442 kb on + strand at 417.442 kb on + strand, within HGI48_RS01880 at 417.442 kb on + strand, within HGI48_RS01880 at 417.443 kb on - strand, within HGI48_RS01880 at 417.443 kb on - strand, within HGI48_RS01880 at 417.443 kb on - strand at 417.443 kb on - strand, within HGI48_RS01880 at 417.494 kb on - strand, within HGI48_RS01880 at 417.494 kb on - strand, within HGI48_RS01880 at 417.517 kb on + strand, within HGI48_RS01880 at 417.518 kb on - strand, within HGI48_RS01880 at 417.518 kb on - strand, within HGI48_RS01880 at 417.518 kb on - strand, within HGI48_RS01880 at 417.528 kb on - strand, within HGI48_RS01880 at 417.528 kb on - strand, within HGI48_RS01880 at 417.550 kb on + strand, within HGI48_RS01880 at 417.551 kb on - strand, within HGI48_RS01880 at 417.587 kb on + strand, within HGI48_RS01880 at 417.607 kb on + strand, within HGI48_RS01880 at 417.607 kb on + strand, within HGI48_RS01880 at 417.608 kb on - strand, within HGI48_RS01880 at 417.608 kb on - strand, within HGI48_RS01880 at 417.608 kb on - strand, within HGI48_RS01880 at 417.608 kb on - strand, within HGI48_RS01880 at 417.628 kb on - strand, within HGI48_RS01880 at 417.661 kb on + strand at 417.661 kb on + strand at 417.662 kb on - strand at 417.662 kb on - strand at 417.675 kb on + strand at 417.675 kb on + strand at 417.693 kb on + strand at 417.747 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 414,326 - -1.2 414,326 - -0.8 414,406 - +0.2 414,406 - -0.0 414,409 + -1.4 414,410 - -1.5 414,410 - -1.2 414,410 - -0.2 414,410 - -0.5 414,463 - -0.6 414,628 + HGI48_RS01865 0.26 +1.8 414,629 - HGI48_RS01865 0.26 -0.1 414,629 - HGI48_RS01865 0.26 +1.0 414,632 + +0.2 414,633 - HGI48_RS01865 0.26 +0.2 414,633 - HGI48_RS01865 0.26 +1.0 414,633 - HGI48_RS01865 0.26 -0.7 414,633 - HGI48_RS01865 0.26 -0.2 414,678 + +1.2 414,679 - HGI48_RS01865 0.31 +0.1 414,690 + HGI48_RS01865 0.32 -3.0 414,716 + HGI48_RS01865 0.35 -0.3 414,736 - HGI48_RS01865 0.37 -0.8 414,738 + HGI48_RS01865 0.38 -0.4 414,739 - HGI48_RS01865 0.38 -0.5 414,739 - HGI48_RS01865 0.38 +1.2 414,965 - HGI48_RS01865 0.62 -0.5 415,057 + +2.4 415,065 + HGI48_RS01865 0.73 -1.2 415,065 + HGI48_RS01865 0.73 +0.2 415,065 + +1.5 415,065 + HGI48_RS01865 0.73 -0.4 415,065 + HGI48_RS01865 0.73 -0.7 415,065 + HGI48_RS01865 0.73 -0.1 415,065 + HGI48_RS01865 0.73 -0.3 415,065 + HGI48_RS01865 0.73 +0.4 415,066 - -0.2 415,066 - HGI48_RS01865 0.73 +0.2 415,066 - HGI48_RS01865 0.73 +0.0 415,066 - HGI48_RS01865 0.73 -0.8 415,066 - HGI48_RS01865 0.73 -0.4 415,066 - HGI48_RS01865 0.73 +0.9 415,066 - HGI48_RS01865 0.73 +0.4 415,066 - HGI48_RS01865 0.73 -1.0 415,134 + HGI48_RS01865 0.80 -0.8 415,135 - HGI48_RS01865 0.80 -0.2 415,159 + HGI48_RS01865 0.83 -0.9 415,159 + HGI48_RS01865 0.83 +0.0 415,159 + HGI48_RS01865 0.83 -1.0 415,230 + -0.6 415,230 + -1.3 415,230 + +0.1 415,230 + +0.5 415,230 + +1.4 415,230 + +0.6 415,230 + +1.7 415,231 - -0.2 415,231 - +1.1 415,231 - -1.2 415,290 + -0.7 415,291 - -0.8 415,313 + -0.8 415,313 + -0.5 415,314 - -1.0 415,445 + -1.5 415,541 + HGI48_RS01870 0.16 -0.6 415,541 + HGI48_RS01870 0.16 -0.0 415,541 + HGI48_RS01870 0.16 +0.5 415,541 + HGI48_RS01870 0.16 -2.7 415,541 + HGI48_RS01870 0.16 +0.4 415,541 + HGI48_RS01870 0.16 -1.2 415,542 - HGI48_RS01870 0.16 +0.4 415,542 - HGI48_RS01870 0.16 +1.6 415,749 - HGI48_RS01870 0.30 +0.4 415,772 + HGI48_RS01870 0.32 +1.2 415,772 + HGI48_RS01870 0.32 +0.3 415,772 + HGI48_RS01870 0.32 +1.2 415,772 + HGI48_RS01870 0.32 -1.1 415,772 + HGI48_RS01870 0.32 -1.5 415,772 + HGI48_RS01870 0.32 -0.2 415,772 + HGI48_RS01870 0.32 +1.3 415,772 + HGI48_RS01870 0.32 -0.4 415,773 - HGI48_RS01870 0.32 +1.1 415,773 - HGI48_RS01870 0.32 +1.4 415,778 + HGI48_RS01870 0.32 +0.4 415,779 - HGI48_RS01870 0.32 +0.4 415,845 - HGI48_RS01870 0.37 -0.1 415,932 + HGI48_RS01870 0.43 -0.2 415,933 - HGI48_RS01870 0.43 -0.9 415,970 + HGI48_RS01870 0.46 +1.6 415,970 + HGI48_RS01870 0.46 -1.5 415,970 + HGI48_RS01870 0.46 -0.0 415,970 + HGI48_RS01870 0.46 -0.5 415,971 - HGI48_RS01870 0.46 -1.2 415,971 - HGI48_RS01870 0.46 +0.3 415,971 - HGI48_RS01870 0.46 +0.3 416,054 + HGI48_RS01870 0.52 +1.4 416,084 - HGI48_RS01870 0.54 +0.9 416,112 + HGI48_RS01870 0.56 -1.8 416,138 + HGI48_RS01870 0.57 +0.6 416,138 + HGI48_RS01870 0.57 +0.8 416,138 + HGI48_RS01870 0.57 -1.2 416,139 - HGI48_RS01870 0.57 -2.9 416,228 + HGI48_RS01870 0.64 +0.1 416,228 + HGI48_RS01870 0.64 +0.3 416,228 + HGI48_RS01870 0.64 +1.8 416,228 + HGI48_RS01870 0.64 -0.9 416,228 + HGI48_RS01870 0.64 -1.8 416,228 + HGI48_RS01870 0.64 +0.0 416,228 + HGI48_RS01870 0.64 -0.1 416,228 + HGI48_RS01870 0.64 +1.2 416,229 - HGI48_RS01870 0.64 +0.1 416,256 + HGI48_RS01870 0.66 -1.4 416,270 + HGI48_RS01870 0.67 +0.1 416,270 + HGI48_RS01870 0.67 +0.5 416,270 + +1.4 416,270 + HGI48_RS01870 0.67 -1.2 416,270 + HGI48_RS01870 0.67 -2.2 416,271 - HGI48_RS01870 0.67 -1.4 416,271 - HGI48_RS01870 0.67 +0.7 416,271 - +0.2 416,271 - HGI48_RS01870 0.67 +0.5 416,271 - HGI48_RS01870 0.67 -2.7 416,273 + HGI48_RS01870 0.67 -2.2 416,273 + HGI48_RS01870 0.67 +0.4 416,273 + HGI48_RS01870 0.67 +0.2 416,274 - HGI48_RS01870 0.67 -0.3 416,274 - HGI48_RS01870 0.67 -0.7 416,274 - HGI48_RS01870 0.67 -0.7 416,299 - HGI48_RS01870 0.69 +0.6 416,299 - HGI48_RS01870 0.69 +1.0 416,299 - HGI48_RS01870 0.69 +0.5 416,321 + HGI48_RS01870 0.70 +0.8 416,321 + HGI48_RS01870 0.70 -1.2 416,322 - HGI48_RS01870 0.70 +0.1 416,325 + HGI48_RS01870 0.70 -0.8 416,325 + HGI48_RS01870 0.70 +1.1 416,326 - HGI48_RS01870 0.70 -0.3 416,326 - HGI48_RS01870 0.70 +0.9 416,364 - HGI48_RS01870 0.73 -0.0 416,429 + HGI48_RS01870 0.78 +0.0 416,430 - HGI48_RS01870 0.78 +0.2 416,430 - HGI48_RS01870 0.78 +0.2 416,433 + HGI48_RS01870 0.78 -1.0 416,433 + HGI48_RS01870 0.78 +0.2 416,433 + HGI48_RS01870 0.78 -0.4 416,434 - HGI48_RS01870 0.78 +0.4 416,434 - HGI48_RS01870 0.78 -1.2 416,490 + HGI48_RS01870 0.82 -1.2 416,490 + HGI48_RS01870 0.82 +1.1 416,490 + HGI48_RS01870 0.82 -1.4 416,490 + HGI48_RS01870 0.82 +0.0 416,490 + +0.2 416,490 + HGI48_RS01870 0.82 -0.2 416,491 - HGI48_RS01870 0.82 +0.4 416,491 - HGI48_RS01870 0.82 -0.8 416,526 + HGI48_RS01870 0.84 -1.1 416,526 + HGI48_RS01870 0.84 -0.6 416,527 - HGI48_RS01870 0.84 +0.2 416,567 + HGI48_RS01870 0.87 -0.9 416,567 + HGI48_RS01870 0.87 -1.0 416,574 + HGI48_RS01870 0.88 -0.3 416,580 + HGI48_RS01870 0.88 -1.2 416,675 + +0.1 416,675 + +1.4 416,676 - -0.3 416,676 - +0.1 416,717 + +1.4 416,717 + +0.1 416,717 + -1.1 416,717 + +0.2 416,717 + +1.8 416,718 - -1.8 416,718 - -1.5 416,718 - +0.3 416,721 - -2.2 416,783 + -0.8 416,783 + +0.4 416,783 + +1.2 416,784 - +0.2 416,784 - -1.2 416,804 - -2.5 416,829 + +1.2 416,829 + +0.3 416,829 + -1.2 416,829 + +2.4 416,830 - +1.0 416,830 - -1.2 416,872 - +0.7 416,872 - -0.2 416,914 - +1.4 416,968 + -0.2 416,968 + -0.2 416,968 + +0.4 416,968 + -0.5 416,969 - +1.6 416,969 - +0.4 416,969 - +0.2 416,975 + +1.5 416,975 + +0.3 416,975 + +0.8 416,975 + +0.1 416,975 + -0.9 416,976 - +1.0 416,978 + +0.1 416,979 - -1.5 416,979 - -0.4 416,979 - +0.1 417,041 + -0.2 417,041 + -0.4 417,042 - -2.5 417,042 - +0.1 417,048 + -2.0 417,048 + +0.3 417,049 - +1.3 417,127 + -0.5 417,347 + +2.6 417,348 - -1.6 417,384 + HGI48_RS01880 0.11 -0.2 417,442 + HGI48_RS01880 0.28 -1.9 417,442 + -0.8 417,442 + HGI48_RS01880 0.28 -1.5 417,442 + HGI48_RS01880 0.28 -0.6 417,443 - HGI48_RS01880 0.29 +0.6 417,443 - HGI48_RS01880 0.29 -1.8 417,443 - +0.8 417,443 - HGI48_RS01880 0.29 -0.4 417,494 - HGI48_RS01880 0.44 -3.0 417,494 - HGI48_RS01880 0.44 -0.1 417,517 + HGI48_RS01880 0.51 +0.5 417,518 - HGI48_RS01880 0.52 +0.3 417,518 - HGI48_RS01880 0.52 -0.2 417,518 - HGI48_RS01880 0.52 -0.0 417,528 - HGI48_RS01880 0.55 +0.8 417,528 - HGI48_RS01880 0.55 +1.2 417,550 + HGI48_RS01880 0.61 -0.2 417,551 - HGI48_RS01880 0.62 +1.3 417,587 + HGI48_RS01880 0.72 +0.9 417,607 + HGI48_RS01880 0.78 -0.5 417,607 + HGI48_RS01880 0.78 +0.2 417,608 - HGI48_RS01880 0.79 +0.3 417,608 - HGI48_RS01880 0.79 +0.8 417,608 - HGI48_RS01880 0.79 +0.8 417,608 - HGI48_RS01880 0.79 +0.8 417,628 - HGI48_RS01880 0.85 -1.4 417,661 + -1.6 417,661 + +0.4 417,662 - +0.1 417,662 - -0.8 417,675 + +0.8 417,675 + +0.2 417,693 + +0.3 417,747 + +1.0
Or see this region's nucleotide sequence