Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01715 and HGI48_RS01720 are separated by 4 nucleotides HGI48_RS01720 and HGI48_RS01725 are separated by 314 nucleotides HGI48_RS01725 and HGI48_RS01730 are separated by 25 nucleotides
HGI48_RS01715: HGI48_RS01715 - tol-pal system-associated acyl-CoA thioesterase, at 379,321 to 380,253
_RS01715
HGI48_RS01720: HGI48_RS01720 - TonB system transport protein ExbD, at 380,258 to 380,677
_RS01720
HGI48_RS01725: HGI48_RS01725 - L-rhamnose mutarotase, at 380,992 to 381,306
_RS01725
HGI48_RS01730: HGI48_RS01730 - L-rhamnose/proton symporter RhaT, at 381,332 to 382,360
_RS01730
Position (kb) 380
381 Strain fitness (log2 ratio) -2
-1
0
1
2 at 379.325 kb on - strand at 379.325 kb on - strand at 379.341 kb on + strand at 379.341 kb on + strand at 379.342 kb on - strand at 379.342 kb on - strand at 379.342 kb on - strand at 379.342 kb on - strand at 379.344 kb on + strand at 379.345 kb on - strand at 379.372 kb on - strand at 379.564 kb on + strand at 379.564 kb on + strand at 379.564 kb on + strand, within HGI48_RS01715 at 379.564 kb on + strand, within HGI48_RS01715 at 379.564 kb on + strand, within HGI48_RS01715 at 379.564 kb on + strand, within HGI48_RS01715 at 379.565 kb on - strand, within HGI48_RS01715 at 379.565 kb on - strand, within HGI48_RS01715 at 379.565 kb on - strand, within HGI48_RS01715 at 379.565 kb on - strand at 379.647 kb on + strand, within HGI48_RS01715 at 379.648 kb on - strand at 379.693 kb on + strand, within HGI48_RS01715 at 379.693 kb on + strand, within HGI48_RS01715 at 379.694 kb on - strand, within HGI48_RS01715 at 379.848 kb on + strand, within HGI48_RS01715 at 379.848 kb on + strand, within HGI48_RS01715 at 379.848 kb on + strand, within HGI48_RS01715 at 379.848 kb on + strand at 379.849 kb on - strand at 379.849 kb on - strand, within HGI48_RS01715 at 379.849 kb on - strand, within HGI48_RS01715 at 380.098 kb on - strand, within HGI48_RS01715 at 380.098 kb on - strand, within HGI48_RS01715 at 380.101 kb on + strand, within HGI48_RS01715 at 380.101 kb on + strand, within HGI48_RS01715 at 380.101 kb on + strand, within HGI48_RS01715 at 380.101 kb on + strand, within HGI48_RS01715 at 380.102 kb on - strand at 380.102 kb on - strand, within HGI48_RS01715 at 380.102 kb on - strand, within HGI48_RS01715 at 380.102 kb on - strand, within HGI48_RS01715 at 380.102 kb on - strand, within HGI48_RS01715 at 380.102 kb on - strand, within HGI48_RS01715 at 380.102 kb on - strand, within HGI48_RS01715 at 380.102 kb on - strand, within HGI48_RS01715 at 380.102 kb on - strand, within HGI48_RS01715 at 380.104 kb on - strand, within HGI48_RS01715 at 380.131 kb on + strand, within HGI48_RS01715 at 380.131 kb on + strand, within HGI48_RS01715 at 380.132 kb on - strand at 380.132 kb on - strand, within HGI48_RS01715 at 380.132 kb on - strand, within HGI48_RS01715 at 380.246 kb on + strand at 380.251 kb on + strand at 380.251 kb on + strand at 380.252 kb on - strand at 380.252 kb on - strand at 380.252 kb on - strand at 380.385 kb on + strand, within HGI48_RS01720 at 380.386 kb on - strand, within HGI48_RS01720 at 380.471 kb on - strand, within HGI48_RS01720 at 380.480 kb on + strand, within HGI48_RS01720 at 380.481 kb on - strand, within HGI48_RS01720 at 380.549 kb on - strand, within HGI48_RS01720 at 380.592 kb on - strand, within HGI48_RS01720 at 380.687 kb on + strand at 380.688 kb on - strand at 380.688 kb on - strand at 380.710 kb on + strand at 380.710 kb on + strand at 380.748 kb on + strand at 380.748 kb on + strand at 380.748 kb on + strand at 380.748 kb on + strand at 380.748 kb on + strand at 380.749 kb on - strand at 380.755 kb on - strand at 380.770 kb on + strand at 380.771 kb on - strand at 380.776 kb on + strand at 380.777 kb on - strand at 380.814 kb on + strand at 380.814 kb on + strand at 380.814 kb on + strand at 380.814 kb on + strand at 380.814 kb on + strand at 380.815 kb on - strand at 380.815 kb on - strand at 380.815 kb on - strand at 380.815 kb on - strand at 380.820 kb on + strand at 380.821 kb on - strand at 380.837 kb on - strand at 380.843 kb on - strand at 380.894 kb on - strand at 380.955 kb on + strand at 380.971 kb on + strand at 380.972 kb on - strand at 380.993 kb on + strand at 380.993 kb on + strand at 380.993 kb on + strand at 380.993 kb on + strand at 380.993 kb on + strand at 380.994 kb on - strand at 380.994 kb on - strand at 380.994 kb on - strand at 380.994 kb on - strand at 381.057 kb on + strand, within HGI48_RS01725 at 381.057 kb on + strand at 381.057 kb on + strand, within HGI48_RS01725 at 381.057 kb on + strand, within HGI48_RS01725 at 381.058 kb on - strand, within HGI48_RS01725 at 381.058 kb on - strand at 381.069 kb on + strand, within HGI48_RS01725 at 381.069 kb on + strand, within HGI48_RS01725 at 381.069 kb on + strand, within HGI48_RS01725 at 381.069 kb on + strand, within HGI48_RS01725 at 381.070 kb on - strand, within HGI48_RS01725 at 381.070 kb on - strand, within HGI48_RS01725 at 381.070 kb on - strand, within HGI48_RS01725 at 381.070 kb on - strand, within HGI48_RS01725 at 381.071 kb on + strand, within HGI48_RS01725 at 381.071 kb on + strand, within HGI48_RS01725 at 381.071 kb on + strand, within HGI48_RS01725 at 381.072 kb on - strand, within HGI48_RS01725 at 381.072 kb on - strand, within HGI48_RS01725 at 381.072 kb on - strand, within HGI48_RS01725 at 381.072 kb on - strand, within HGI48_RS01725 at 381.072 kb on - strand, within HGI48_RS01725 at 381.072 kb on - strand, within HGI48_RS01725 at 381.072 kb on - strand, within HGI48_RS01725 at 381.099 kb on + strand at 381.100 kb on - strand, within HGI48_RS01725 at 381.143 kb on + strand, within HGI48_RS01725 at 381.144 kb on - strand, within HGI48_RS01725 at 381.144 kb on - strand, within HGI48_RS01725 at 381.185 kb on + strand, within HGI48_RS01725 at 381.186 kb on - strand, within HGI48_RS01725 at 381.186 kb on - strand, within HGI48_RS01725 at 381.186 kb on - strand, within HGI48_RS01725 at 381.186 kb on - strand, within HGI48_RS01725 at 381.186 kb on - strand, within HGI48_RS01725 at 381.186 kb on - strand, within HGI48_RS01725 at 381.186 kb on - strand, within HGI48_RS01725 at 381.189 kb on + strand at 381.190 kb on - strand, within HGI48_RS01725 at 381.190 kb on - strand at 381.190 kb on - strand, within HGI48_RS01725 at 381.190 kb on - strand, within HGI48_RS01725 at 381.254 kb on + strand, within HGI48_RS01725 at 381.311 kb on + strand at 381.311 kb on + strand at 381.311 kb on + strand at 381.311 kb on + strand at 381.312 kb on - strand at 381.312 kb on - strand at 381.312 kb on - strand at 381.312 kb on - strand at 381.355 kb on + strand at 381.355 kb on + strand at 381.468 kb on + strand, within HGI48_RS01730 at 381.468 kb on + strand, within HGI48_RS01730 at 381.478 kb on + strand, within HGI48_RS01730 at 381.478 kb on + strand, within HGI48_RS01730 at 381.478 kb on + strand at 381.479 kb on - strand, within HGI48_RS01730 at 381.479 kb on - strand, within HGI48_RS01730 at 381.479 kb on - strand, within HGI48_RS01730 at 381.479 kb on - strand, within HGI48_RS01730 at 381.479 kb on - strand, within HGI48_RS01730 at 381.537 kb on + strand, within HGI48_RS01730 at 381.537 kb on + strand, within HGI48_RS01730 at 381.538 kb on - strand, within HGI48_RS01730 at 381.538 kb on - strand, within HGI48_RS01730 at 381.538 kb on - strand, within HGI48_RS01730 at 381.631 kb on - strand, within HGI48_RS01730
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 379,325 - +0.0 379,325 - +0.1 379,341 + -0.0 379,341 + +0.4 379,342 - -0.5 379,342 - -0.8 379,342 - +0.8 379,342 - +0.7 379,344 + -0.2 379,345 - +0.5 379,372 - +0.3 379,564 + +0.8 379,564 + +1.5 379,564 + HGI48_RS01715 0.26 +0.8 379,564 + HGI48_RS01715 0.26 +0.6 379,564 + HGI48_RS01715 0.26 -1.3 379,564 + HGI48_RS01715 0.26 +0.3 379,565 - HGI48_RS01715 0.26 -0.2 379,565 - HGI48_RS01715 0.26 -1.5 379,565 - HGI48_RS01715 0.26 -0.8 379,565 - +1.4 379,647 + HGI48_RS01715 0.35 +1.0 379,648 - -0.8 379,693 + HGI48_RS01715 0.40 +0.5 379,693 + HGI48_RS01715 0.40 -2.2 379,694 - HGI48_RS01715 0.40 +0.3 379,848 + HGI48_RS01715 0.56 +0.4 379,848 + HGI48_RS01715 0.56 -0.0 379,848 + HGI48_RS01715 0.56 -1.2 379,848 + -0.8 379,849 - +0.2 379,849 - HGI48_RS01715 0.57 +0.4 379,849 - HGI48_RS01715 0.57 -0.1 380,098 - HGI48_RS01715 0.83 -1.0 380,098 - HGI48_RS01715 0.83 +0.0 380,101 + HGI48_RS01715 0.84 +1.5 380,101 + HGI48_RS01715 0.84 +0.1 380,101 + HGI48_RS01715 0.84 -2.2 380,101 + HGI48_RS01715 0.84 -0.3 380,102 - +0.2 380,102 - HGI48_RS01715 0.84 -1.4 380,102 - HGI48_RS01715 0.84 -0.5 380,102 - HGI48_RS01715 0.84 -1.2 380,102 - HGI48_RS01715 0.84 +0.2 380,102 - HGI48_RS01715 0.84 -0.8 380,102 - HGI48_RS01715 0.84 +1.5 380,102 - HGI48_RS01715 0.84 +0.2 380,102 - HGI48_RS01715 0.84 -0.2 380,104 - HGI48_RS01715 0.84 +1.2 380,131 + HGI48_RS01715 0.87 -1.4 380,131 + HGI48_RS01715 0.87 -1.5 380,132 - +1.8 380,132 - HGI48_RS01715 0.87 +0.5 380,132 - HGI48_RS01715 0.87 +0.6 380,246 + +0.2 380,251 + -0.2 380,251 + +1.0 380,252 - +0.8 380,252 - -0.2 380,252 - -0.4 380,385 + HGI48_RS01720 0.30 -0.2 380,386 - HGI48_RS01720 0.30 -0.8 380,471 - HGI48_RS01720 0.51 -0.7 380,480 + HGI48_RS01720 0.53 +0.1 380,481 - HGI48_RS01720 0.53 -1.5 380,549 - HGI48_RS01720 0.69 -2.2 380,592 - HGI48_RS01720 0.80 -0.1 380,687 + +1.2 380,688 - +0.6 380,688 - -1.2 380,710 + +0.4 380,710 + +0.6 380,748 + +0.1 380,748 + -1.0 380,748 + -1.4 380,748 + -0.0 380,748 + -0.5 380,749 - +0.6 380,755 - +0.1 380,770 + +0.8 380,771 - -1.2 380,776 + -0.6 380,777 - -0.5 380,814 + +0.8 380,814 + +0.8 380,814 + -0.2 380,814 + -0.9 380,814 + -0.1 380,815 - +0.6 380,815 - +0.7 380,815 - +0.8 380,815 - +0.2 380,820 + -0.9 380,821 - -0.3 380,837 - +0.4 380,843 - +0.8 380,894 - +1.5 380,955 + -1.2 380,971 + -1.2 380,972 - -0.9 380,993 + -1.5 380,993 + +0.8 380,993 + +1.1 380,993 + -0.4 380,993 + +0.4 380,994 - +0.1 380,994 - -1.4 380,994 - -0.7 380,994 - -0.8 381,057 + HGI48_RS01725 0.21 +0.4 381,057 + +0.2 381,057 + HGI48_RS01725 0.21 +0.6 381,057 + HGI48_RS01725 0.21 -1.2 381,058 - HGI48_RS01725 0.21 -0.3 381,058 - +0.2 381,069 + HGI48_RS01725 0.24 +0.5 381,069 + HGI48_RS01725 0.24 -0.0 381,069 + HGI48_RS01725 0.24 +0.1 381,069 + HGI48_RS01725 0.24 -0.7 381,070 - HGI48_RS01725 0.25 -1.5 381,070 - HGI48_RS01725 0.25 -0.3 381,070 - HGI48_RS01725 0.25 -0.5 381,070 - HGI48_RS01725 0.25 -0.6 381,071 + HGI48_RS01725 0.25 +0.8 381,071 + HGI48_RS01725 0.25 -1.4 381,071 + HGI48_RS01725 0.25 -0.2 381,072 - HGI48_RS01725 0.25 +1.1 381,072 - HGI48_RS01725 0.25 +0.1 381,072 - HGI48_RS01725 0.25 +0.5 381,072 - HGI48_RS01725 0.25 -0.3 381,072 - HGI48_RS01725 0.25 +0.2 381,072 - HGI48_RS01725 0.25 +0.8 381,072 - HGI48_RS01725 0.25 -0.2 381,099 + -0.8 381,100 - HGI48_RS01725 0.34 -1.5 381,143 + HGI48_RS01725 0.48 -1.5 381,144 - HGI48_RS01725 0.48 +0.2 381,144 - HGI48_RS01725 0.48 +1.3 381,185 + HGI48_RS01725 0.61 -1.4 381,186 - HGI48_RS01725 0.62 +0.6 381,186 - HGI48_RS01725 0.62 -0.9 381,186 - HGI48_RS01725 0.62 -0.4 381,186 - HGI48_RS01725 0.62 -1.2 381,186 - HGI48_RS01725 0.62 -0.0 381,186 - HGI48_RS01725 0.62 +0.6 381,186 - HGI48_RS01725 0.62 +0.1 381,189 + -0.8 381,190 - HGI48_RS01725 0.63 +0.8 381,190 - -0.8 381,190 - HGI48_RS01725 0.63 +0.3 381,190 - HGI48_RS01725 0.63 -0.2 381,254 + HGI48_RS01725 0.83 +0.0 381,311 + +0.1 381,311 + -0.8 381,311 + -0.5 381,311 + +0.1 381,312 - +0.1 381,312 - +0.8 381,312 - +1.4 381,312 - -0.2 381,355 + +0.2 381,355 + +1.5 381,468 + HGI48_RS01730 0.13 -1.1 381,468 + HGI48_RS01730 0.13 -0.4 381,478 + HGI48_RS01730 0.14 +0.1 381,478 + HGI48_RS01730 0.14 -0.5 381,478 + -0.8 381,479 - HGI48_RS01730 0.14 +1.4 381,479 - HGI48_RS01730 0.14 -0.4 381,479 - HGI48_RS01730 0.14 -1.0 381,479 - HGI48_RS01730 0.14 -1.0 381,479 - HGI48_RS01730 0.14 +0.2 381,537 + HGI48_RS01730 0.20 +1.2 381,537 + HGI48_RS01730 0.20 +0.5 381,538 - HGI48_RS01730 0.20 +0.8 381,538 - HGI48_RS01730 0.20 -1.8 381,538 - HGI48_RS01730 0.20 -0.2 381,631 - HGI48_RS01730 0.29 +0.6
Or see this region's nucleotide sequence