Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01685 and HGI48_RS01690 are separated by 60 nucleotides HGI48_RS01690 and HGI48_RS01695 are separated by 231 nucleotides
HGI48_RS01685: HGI48_RS01685 - cell division protein FtsP, at 372,101 to 373,519
_RS01685
HGI48_RS01690: HGI48_RS01690 - 2,5-didehydrogluconate reductase DkgA, at 373,580 to 374,425
_RS01690
HGI48_RS01695: HGI48_RS01695 - alcohol dehydrogenase, at 374,657 to 375,820
_RS01695
Position (kb) 373
374
375 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 372.604 kb on + strand at 372.605 kb on - strand, within HGI48_RS01685 at 372.605 kb on - strand, within HGI48_RS01685 at 372.605 kb on - strand, within HGI48_RS01685 at 372.605 kb on - strand at 372.629 kb on + strand, within HGI48_RS01685 at 372.695 kb on + strand, within HGI48_RS01685 at 372.696 kb on - strand, within HGI48_RS01685 at 372.730 kb on + strand, within HGI48_RS01685 at 372.762 kb on - strand, within HGI48_RS01685 at 372.824 kb on + strand, within HGI48_RS01685 at 372.825 kb on - strand, within HGI48_RS01685 at 372.953 kb on - strand, within HGI48_RS01685 at 373.037 kb on - strand, within HGI48_RS01685 at 373.039 kb on + strand, within HGI48_RS01685 at 373.039 kb on + strand at 373.039 kb on + strand, within HGI48_RS01685 at 373.040 kb on - strand at 373.040 kb on - strand at 373.062 kb on + strand at 373.062 kb on + strand, within HGI48_RS01685 at 373.063 kb on - strand, within HGI48_RS01685 at 373.102 kb on + strand, within HGI48_RS01685 at 373.102 kb on + strand at 373.102 kb on + strand, within HGI48_RS01685 at 373.132 kb on + strand, within HGI48_RS01685 at 373.133 kb on - strand, within HGI48_RS01685 at 373.133 kb on - strand, within HGI48_RS01685 at 373.230 kb on + strand, within HGI48_RS01685 at 373.375 kb on - strand at 373.406 kb on + strand at 373.406 kb on + strand at 373.407 kb on - strand at 373.445 kb on + strand at 373.445 kb on + strand at 373.445 kb on + strand at 373.445 kb on + strand at 373.448 kb on + strand at 373.448 kb on + strand at 373.448 kb on + strand at 373.449 kb on - strand at 373.449 kb on - strand at 373.449 kb on - strand at 373.651 kb on + strand at 373.652 kb on - strand at 373.664 kb on + strand at 373.664 kb on + strand at 373.664 kb on + strand at 373.665 kb on - strand, within HGI48_RS01690 at 373.715 kb on - strand, within HGI48_RS01690 at 373.715 kb on - strand at 373.839 kb on - strand, within HGI48_RS01690 at 374.079 kb on + strand at 374.079 kb on + strand, within HGI48_RS01690 at 374.079 kb on + strand, within HGI48_RS01690 at 374.079 kb on + strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.110 kb on + strand, within HGI48_RS01690 at 374.110 kb on + strand, within HGI48_RS01690 at 374.115 kb on + strand at 374.115 kb on + strand at 374.116 kb on - strand, within HGI48_RS01690 at 374.116 kb on - strand, within HGI48_RS01690 at 374.116 kb on - strand at 374.139 kb on - strand, within HGI48_RS01690 at 374.139 kb on - strand, within HGI48_RS01690 at 374.386 kb on + strand at 374.386 kb on + strand at 374.387 kb on - strand at 374.387 kb on - strand at 374.387 kb on - strand at 374.387 kb on - strand at 374.405 kb on - strand at 374.425 kb on + strand at 374.425 kb on + strand at 374.425 kb on + strand at 374.528 kb on + strand at 374.528 kb on + strand at 374.529 kb on - strand at 374.529 kb on - strand at 374.529 kb on - strand at 374.529 kb on - strand at 374.572 kb on + strand at 374.573 kb on - strand at 374.573 kb on - strand at 374.573 kb on - strand at 374.591 kb on + strand at 374.591 kb on + strand at 374.592 kb on - strand at 374.592 kb on - strand at 374.622 kb on + strand at 374.622 kb on + strand at 374.622 kb on + strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.628 kb on + strand at 374.628 kb on + strand at 374.628 kb on + strand at 374.629 kb on - strand at 374.629 kb on - strand at 374.673 kb on + strand at 374.674 kb on - strand at 374.674 kb on - strand at 374.804 kb on + strand, within HGI48_RS01695 at 374.901 kb on + strand, within HGI48_RS01695 at 374.963 kb on - strand, within HGI48_RS01695 at 375.101 kb on + strand, within HGI48_RS01695 at 375.101 kb on + strand, within HGI48_RS01695 at 375.101 kb on + strand, within HGI48_RS01695 at 375.102 kb on - strand, within HGI48_RS01695 at 375.102 kb on - strand, within HGI48_RS01695 at 375.108 kb on + strand, within HGI48_RS01695 at 375.108 kb on + strand, within HGI48_RS01695 at 375.108 kb on + strand, within HGI48_RS01695 at 375.108 kb on + strand at 375.108 kb on + strand, within HGI48_RS01695 at 375.108 kb on + strand, within HGI48_RS01695 at 375.109 kb on - strand, within HGI48_RS01695 at 375.109 kb on - strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand at 375.149 kb on + strand, within HGI48_RS01695 at 375.149 kb on + strand, within HGI48_RS01695 at 375.150 kb on - strand, within HGI48_RS01695 at 375.213 kb on + strand, within HGI48_RS01695 at 375.214 kb on - strand, within HGI48_RS01695 at 375.214 kb on - strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 372,604 + +1.8 372,605 - HGI48_RS01685 0.36 +1.2 372,605 - HGI48_RS01685 0.36 +0.2 372,605 - HGI48_RS01685 0.36 -2.8 372,605 - +0.8 372,629 + HGI48_RS01685 0.37 -0.5 372,695 + HGI48_RS01685 0.42 -0.2 372,696 - HGI48_RS01685 0.42 -1.5 372,730 + HGI48_RS01685 0.44 -0.2 372,762 - HGI48_RS01685 0.47 -0.7 372,824 + HGI48_RS01685 0.51 -0.8 372,825 - HGI48_RS01685 0.51 -0.5 372,953 - HGI48_RS01685 0.60 -0.8 373,037 - HGI48_RS01685 0.66 -0.0 373,039 + HGI48_RS01685 0.66 -1.8 373,039 + +0.2 373,039 + HGI48_RS01685 0.66 -0.4 373,040 - -0.8 373,040 - +1.8 373,062 + +0.8 373,062 + HGI48_RS01685 0.68 -0.3 373,063 - HGI48_RS01685 0.68 -0.5 373,102 + HGI48_RS01685 0.71 -0.2 373,102 + +1.4 373,102 + HGI48_RS01685 0.71 -1.2 373,132 + HGI48_RS01685 0.73 -0.5 373,133 - HGI48_RS01685 0.73 +1.4 373,133 - HGI48_RS01685 0.73 +0.2 373,230 + HGI48_RS01685 0.80 -0.0 373,375 - +0.2 373,406 + -0.8 373,406 + +0.3 373,407 - -0.8 373,445 + -0.5 373,445 + -1.8 373,445 + -0.6 373,445 + +2.1 373,448 + -0.5 373,448 + -0.5 373,448 + -1.4 373,449 - +0.2 373,449 - -1.8 373,449 - -2.4 373,651 + -0.6 373,652 - +0.4 373,664 + +0.5 373,664 + +0.4 373,664 + +0.2 373,665 - HGI48_RS01690 0.10 +0.5 373,715 - HGI48_RS01690 0.16 +0.1 373,715 - +1.2 373,839 - HGI48_RS01690 0.31 -2.2 374,079 + +1.5 374,079 + HGI48_RS01690 0.59 -0.3 374,079 + HGI48_RS01690 0.59 +0.1 374,079 + HGI48_RS01690 0.59 -1.4 374,080 - HGI48_RS01690 0.59 -0.8 374,080 - HGI48_RS01690 0.59 +0.6 374,080 - HGI48_RS01690 0.59 -0.9 374,080 - HGI48_RS01690 0.59 -0.3 374,080 - HGI48_RS01690 0.59 +0.2 374,080 - HGI48_RS01690 0.59 -2.5 374,080 - HGI48_RS01690 0.59 -1.5 374,080 - HGI48_RS01690 0.59 +1.0 374,080 - HGI48_RS01690 0.59 -1.9 374,080 - HGI48_RS01690 0.59 -0.6 374,080 - HGI48_RS01690 0.59 -2.0 374,080 - HGI48_RS01690 0.59 -1.5 374,110 + HGI48_RS01690 0.63 -1.5 374,110 + HGI48_RS01690 0.63 +0.8 374,115 + -0.8 374,115 + +0.2 374,116 - HGI48_RS01690 0.63 -1.5 374,116 - HGI48_RS01690 0.63 -2.4 374,116 - +0.8 374,139 - HGI48_RS01690 0.66 -0.4 374,139 - HGI48_RS01690 0.66 +0.1 374,386 + -1.5 374,386 + +1.1 374,387 - +0.2 374,387 - +0.8 374,387 - +0.4 374,387 - -0.2 374,405 - +0.2 374,425 + +0.6 374,425 + -1.2 374,425 + +0.8 374,528 + +0.2 374,528 + -1.7 374,529 - -1.0 374,529 - -0.0 374,529 - +0.8 374,529 - -0.6 374,572 + -0.0 374,573 - +0.2 374,573 - -0.6 374,573 - +0.8 374,591 + +1.4 374,591 + -0.2 374,592 - -0.4 374,592 - +0.1 374,622 + -2.2 374,622 + -0.4 374,622 + +0.2 374,623 - +0.0 374,623 - +0.6 374,623 - -1.8 374,623 - +2.4 374,623 - -0.8 374,623 - -0.8 374,628 + -1.2 374,628 + +0.2 374,628 + -1.2 374,629 - -1.0 374,629 - -0.2 374,673 + +0.2 374,674 - -3.0 374,674 - -2.0 374,804 + HGI48_RS01695 0.13 +0.8 374,901 + HGI48_RS01695 0.21 +0.4 374,963 - HGI48_RS01695 0.26 +0.1 375,101 + HGI48_RS01695 0.38 +0.1 375,101 + HGI48_RS01695 0.38 +0.5 375,101 + HGI48_RS01695 0.38 +0.4 375,102 - HGI48_RS01695 0.38 -0.1 375,102 - HGI48_RS01695 0.38 -2.0 375,108 + HGI48_RS01695 0.39 +0.1 375,108 + HGI48_RS01695 0.39 -1.8 375,108 + HGI48_RS01695 0.39 +0.5 375,108 + +2.0 375,108 + HGI48_RS01695 0.39 -0.2 375,108 + HGI48_RS01695 0.39 -1.5 375,109 - HGI48_RS01695 0.39 -0.2 375,109 - HGI48_RS01695 0.39 -1.1 375,112 + HGI48_RS01695 0.39 +0.1 375,112 + +1.2 375,112 + HGI48_RS01695 0.39 -1.8 375,112 + HGI48_RS01695 0.39 -0.2 375,112 + HGI48_RS01695 0.39 +0.8 375,112 + HGI48_RS01695 0.39 +0.2 375,112 + HGI48_RS01695 0.39 +0.1 375,112 + HGI48_RS01695 0.39 +0.2 375,112 + HGI48_RS01695 0.39 -1.5 375,113 - HGI48_RS01695 0.39 +0.5 375,113 - HGI48_RS01695 0.39 +0.8 375,113 - HGI48_RS01695 0.39 -0.7 375,113 - HGI48_RS01695 0.39 +0.4 375,113 - HGI48_RS01695 0.39 -0.3 375,113 - HGI48_RS01695 0.39 -0.7 375,113 - HGI48_RS01695 0.39 +0.1 375,113 - +1.4 375,149 + HGI48_RS01695 0.42 -0.9 375,149 + HGI48_RS01695 0.42 +0.1 375,150 - HGI48_RS01695 0.42 +0.3 375,213 + HGI48_RS01695 0.48 +0.5 375,214 - HGI48_RS01695 0.48 +0.6 375,214 - HGI48_RS01695 0.48 -1.5 375,279 + HGI48_RS01695 0.53 +0.8 375,279 + HGI48_RS01695 0.53 -0.5 375,279 + HGI48_RS01695 0.53 +0.2 375,279 + HGI48_RS01695 0.53 -2.0 375,279 + HGI48_RS01695 0.53 -0.2 375,280 - HGI48_RS01695 0.54 -1.4 375,280 - HGI48_RS01695 0.54 -0.6 375,280 - HGI48_RS01695 0.54 -0.0 375,280 - HGI48_RS01695 0.54 +0.4 375,280 - HGI48_RS01695 0.54 -0.5 375,280 - HGI48_RS01695 0.54 +0.4
Or see this region's nucleotide sequence