Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01415 and HGI48_RS01420 are separated by 66 nucleotides HGI48_RS01420 and HGI48_RS01425 are separated by 178 nucleotides HGI48_RS01425 and HGI48_RS01430 overlap by 4 nucleotides HGI48_RS01430 and HGI48_RS01435 are separated by 145 nucleotides HGI48_RS01435 and HGI48_RS01440 are separated by 92 nucleotides
HGI48_RS01415: HGI48_RS01415 - metalloprotease PmbA, at 316,517 to 317,857
_RS01415
HGI48_RS01420: HGI48_RS01420 - nucleoside diphosphate kinase regulator, at 317,924 to 318,334
_RS01420
HGI48_RS01425: HGI48_RS01425 - PTS phosphocarrier protein NPr, at 318,513 to 318,785
_RS01425
HGI48_RS01430: HGI48_RS01430 - RNase adapter RapZ, at 318,782 to 319,636
_RS01430
HGI48_RS01435: HGI48_RS01435 - PTS IIA-like nitrogen regulatory protein PtsN, at 319,782 to 320,270
_RS01435
HGI48_RS01440: HGI48_RS01440 - ribosome hibernation promoting factor, at 320,363 to 320,650
_RS01440
Position (kb) 318
319
320 Strain fitness (log2 ratio) -2
-1
0
1
2 at 317.853 kb on + strand at 317.853 kb on + strand at 317.853 kb on + strand at 317.855 kb on + strand at 317.855 kb on + strand at 317.855 kb on + strand at 317.855 kb on + strand at 317.855 kb on + strand at 317.855 kb on + strand at 317.856 kb on - strand at 317.856 kb on - strand at 317.856 kb on - strand at 317.856 kb on - strand at 317.856 kb on - strand at 317.856 kb on - strand at 317.862 kb on + strand at 317.862 kb on + strand at 317.863 kb on - strand at 317.863 kb on - strand at 317.863 kb on - strand at 317.934 kb on + strand at 317.934 kb on + strand at 317.935 kb on - strand at 317.935 kb on - strand at 317.935 kb on - strand at 318.016 kb on + strand, within HGI48_RS01420 at 318.016 kb on + strand, within HGI48_RS01420 at 318.016 kb on + strand at 318.017 kb on - strand, within HGI48_RS01420 at 318.017 kb on - strand, within HGI48_RS01420 at 318.017 kb on - strand, within HGI48_RS01420 at 318.017 kb on - strand, within HGI48_RS01420 at 318.017 kb on - strand, within HGI48_RS01420 at 318.121 kb on + strand, within HGI48_RS01420 at 318.121 kb on + strand, within HGI48_RS01420 at 318.122 kb on - strand, within HGI48_RS01420 at 318.122 kb on - strand, within HGI48_RS01420 at 318.328 kb on + strand at 318.334 kb on + strand at 318.334 kb on + strand at 318.335 kb on - strand at 318.335 kb on - strand at 318.335 kb on - strand at 318.356 kb on + strand at 318.357 kb on - strand at 318.364 kb on - strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.394 kb on - strand at 318.394 kb on - strand at 318.394 kb on - strand at 318.394 kb on - strand at 318.394 kb on - strand at 318.394 kb on - strand at 318.394 kb on - strand at 318.410 kb on - strand at 318.429 kb on + strand at 318.430 kb on - strand at 318.430 kb on - strand at 318.436 kb on + strand at 318.451 kb on + strand at 318.486 kb on + strand at 318.487 kb on - strand at 318.504 kb on + strand at 318.504 kb on + strand at 318.505 kb on - strand at 318.505 kb on - strand at 318.505 kb on - strand at 318.514 kb on + strand at 318.515 kb on - strand at 318.870 kb on + strand at 318.871 kb on - strand, within HGI48_RS01430 at 318.914 kb on - strand, within HGI48_RS01430 at 318.914 kb on - strand, within HGI48_RS01430 at 318.918 kb on + strand, within HGI48_RS01430 at 318.918 kb on + strand, within HGI48_RS01430 at 318.918 kb on + strand, within HGI48_RS01430 at 318.919 kb on - strand, within HGI48_RS01430 at 318.919 kb on - strand, within HGI48_RS01430 at 318.919 kb on - strand, within HGI48_RS01430 at 318.978 kb on + strand, within HGI48_RS01430 at 318.978 kb on + strand at 318.979 kb on - strand, within HGI48_RS01430 at 318.979 kb on - strand, within HGI48_RS01430 at 318.979 kb on - strand, within HGI48_RS01430 at 319.101 kb on + strand at 319.101 kb on + strand, within HGI48_RS01430 at 319.101 kb on + strand, within HGI48_RS01430 at 319.153 kb on + strand, within HGI48_RS01430 at 319.557 kb on + strand at 319.558 kb on - strand at 319.558 kb on - strand at 319.558 kb on - strand at 319.558 kb on - strand at 319.590 kb on - strand at 319.684 kb on + strand at 319.685 kb on - strand at 319.685 kb on - strand at 319.741 kb on + strand at 319.742 kb on - strand at 319.742 kb on - strand at 319.904 kb on + strand at 319.904 kb on + strand, within HGI48_RS01435 at 319.904 kb on + strand, within HGI48_RS01435 at 319.905 kb on - strand, within HGI48_RS01435 at 319.905 kb on - strand, within HGI48_RS01435 at 319.905 kb on - strand, within HGI48_RS01435 at 319.905 kb on - strand, within HGI48_RS01435 at 319.905 kb on - strand, within HGI48_RS01435 at 319.905 kb on - strand, within HGI48_RS01435 at 319.909 kb on - strand, within HGI48_RS01435 at 319.909 kb on - strand, within HGI48_RS01435 at 319.909 kb on - strand, within HGI48_RS01435 at 319.909 kb on - strand, within HGI48_RS01435 at 319.909 kb on - strand, within HGI48_RS01435 at 319.919 kb on + strand, within HGI48_RS01435 at 319.920 kb on - strand at 319.953 kb on + strand, within HGI48_RS01435 at 320.034 kb on - strand, within HGI48_RS01435 at 320.220 kb on - strand, within HGI48_RS01435 at 320.244 kb on - strand at 320.273 kb on + strand at 320.274 kb on - strand at 320.274 kb on - strand at 320.274 kb on - strand at 320.274 kb on - strand at 320.321 kb on + strand at 320.322 kb on - strand at 320.322 kb on - strand at 320.386 kb on + strand at 320.387 kb on - strand at 320.439 kb on + strand, within HGI48_RS01440 at 320.439 kb on + strand, within HGI48_RS01440 at 320.439 kb on + strand at 320.440 kb on - strand, within HGI48_RS01440 at 320.440 kb on - strand, within HGI48_RS01440 at 320.443 kb on + strand, within HGI48_RS01440 at 320.539 kb on - strand, within HGI48_RS01440 at 320.551 kb on + strand, within HGI48_RS01440
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 317,853 + +0.4 317,853 + -0.4 317,853 + -1.3 317,855 + +0.2 317,855 + -0.6 317,855 + +1.2 317,855 + +0.8 317,855 + +0.8 317,855 + -2.0 317,856 - +0.5 317,856 - -0.9 317,856 - -2.0 317,856 - +0.3 317,856 - +0.6 317,856 - +1.7 317,862 + -0.2 317,862 + -1.3 317,863 - +0.2 317,863 - -0.6 317,863 - -0.4 317,934 + +0.4 317,934 + +2.2 317,935 - -0.2 317,935 - +0.1 317,935 - +0.3 318,016 + HGI48_RS01420 0.22 +0.8 318,016 + HGI48_RS01420 0.22 -1.0 318,016 + +2.1 318,017 - HGI48_RS01420 0.23 +0.4 318,017 - HGI48_RS01420 0.23 -0.4 318,017 - HGI48_RS01420 0.23 +0.2 318,017 - HGI48_RS01420 0.23 +0.3 318,017 - HGI48_RS01420 0.23 +0.6 318,121 + HGI48_RS01420 0.48 +1.6 318,121 + HGI48_RS01420 0.48 +1.0 318,122 - HGI48_RS01420 0.48 -0.5 318,122 - HGI48_RS01420 0.48 -1.3 318,328 + +1.0 318,334 + -1.0 318,334 + +1.1 318,335 - -0.2 318,335 - +0.2 318,335 - -0.3 318,356 + +0.2 318,357 - -0.2 318,364 - -0.0 318,393 + -0.1 318,393 + -0.4 318,393 + -0.2 318,393 + -0.2 318,393 + +0.6 318,393 + +2.0 318,393 + +0.0 318,393 + +0.3 318,393 + -2.3 318,393 + -1.0 318,393 + +0.9 318,394 - +0.5 318,394 - +0.8 318,394 - +0.8 318,394 - +0.1 318,394 - +0.4 318,394 - -1.5 318,394 - -0.8 318,410 - -1.2 318,429 + +1.0 318,430 - -1.8 318,430 - -0.9 318,436 + -0.0 318,451 + -1.2 318,486 + +0.1 318,487 - +0.2 318,504 + +0.2 318,504 + +1.8 318,505 - +0.8 318,505 - -0.4 318,505 - +0.2 318,514 + -1.0 318,515 - +0.1 318,870 + +0.8 318,871 - HGI48_RS01430 0.10 -0.8 318,914 - HGI48_RS01430 0.15 -0.9 318,914 - HGI48_RS01430 0.15 -1.2 318,918 + HGI48_RS01430 0.16 -0.9 318,918 + HGI48_RS01430 0.16 -0.5 318,918 + HGI48_RS01430 0.16 -1.3 318,919 - HGI48_RS01430 0.16 -1.0 318,919 - HGI48_RS01430 0.16 -1.2 318,919 - HGI48_RS01430 0.16 +1.2 318,978 + HGI48_RS01430 0.23 -0.5 318,978 + +0.8 318,979 - HGI48_RS01430 0.23 +0.2 318,979 - HGI48_RS01430 0.23 -0.4 318,979 - HGI48_RS01430 0.23 -0.8 319,101 + -0.8 319,101 + HGI48_RS01430 0.37 -1.8 319,101 + HGI48_RS01430 0.37 -0.2 319,153 + HGI48_RS01430 0.43 -0.3 319,557 + +0.4 319,558 - -1.2 319,558 - -0.3 319,558 - +0.5 319,558 - +0.4 319,590 - +0.2 319,684 + +1.1 319,685 - +0.2 319,685 - -0.5 319,741 + -1.0 319,742 - +0.8 319,742 - +0.8 319,904 + +2.4 319,904 + HGI48_RS01435 0.25 +0.5 319,904 + HGI48_RS01435 0.25 -1.0 319,905 - HGI48_RS01435 0.25 +1.8 319,905 - HGI48_RS01435 0.25 -2.0 319,905 - HGI48_RS01435 0.25 +0.4 319,905 - HGI48_RS01435 0.25 +1.9 319,905 - HGI48_RS01435 0.25 +0.5 319,905 - HGI48_RS01435 0.25 -1.4 319,909 - HGI48_RS01435 0.26 -0.2 319,909 - HGI48_RS01435 0.26 -0.5 319,909 - HGI48_RS01435 0.26 -0.1 319,909 - HGI48_RS01435 0.26 -1.6 319,909 - HGI48_RS01435 0.26 +0.1 319,919 + HGI48_RS01435 0.28 -2.0 319,920 - +1.8 319,953 + HGI48_RS01435 0.35 -0.1 320,034 - HGI48_RS01435 0.52 -1.2 320,220 - HGI48_RS01435 0.90 -1.8 320,244 - +1.3 320,273 + -0.2 320,274 - +1.6 320,274 - -1.3 320,274 - -0.0 320,274 - -0.5 320,321 + -1.3 320,322 - -1.8 320,322 - -0.4 320,386 + -0.3 320,387 - +0.3 320,439 + HGI48_RS01440 0.26 +0.7 320,439 + HGI48_RS01440 0.26 +0.1 320,439 + +2.1 320,440 - HGI48_RS01440 0.27 -0.8 320,440 - HGI48_RS01440 0.27 -0.4 320,443 + HGI48_RS01440 0.28 -0.2 320,539 - HGI48_RS01440 0.61 -0.8 320,551 + HGI48_RS01440 0.65 -2.3
Or see this region's nucleotide sequence