Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01410 and HGI48_RS01415 are separated by 190 nucleotides HGI48_RS01415 and HGI48_RS01420 are separated by 66 nucleotides HGI48_RS01420 and HGI48_RS01425 are separated by 178 nucleotides HGI48_RS01425 and HGI48_RS01430 overlap by 4 nucleotides
HGI48_RS01410: HGI48_RS01410 - ribosome-associated protein, at 315,778 to 316,326
_RS01410
HGI48_RS01415: HGI48_RS01415 - metalloprotease PmbA, at 316,517 to 317,857
_RS01415
HGI48_RS01420: HGI48_RS01420 - nucleoside diphosphate kinase regulator, at 317,924 to 318,334
_RS01420
HGI48_RS01425: HGI48_RS01425 - PTS phosphocarrier protein NPr, at 318,513 to 318,785
_RS01425
HGI48_RS01430: HGI48_RS01430 - RNase adapter RapZ, at 318,782 to 319,636
_RS01430
Position (kb) 316
317
318 Strain fitness (log2 ratio) -2
-1
0
1
2 at 315.535 kb on - strand at 315.538 kb on - strand at 315.568 kb on + strand at 315.568 kb on + strand at 315.568 kb on + strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.597 kb on + strand at 315.598 kb on - strand at 315.598 kb on - strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.733 kb on + strand at 315.733 kb on + strand at 315.733 kb on + strand at 315.734 kb on - strand at 315.734 kb on - strand at 315.761 kb on + strand at 315.776 kb on + strand at 315.776 kb on + strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.779 kb on + strand at 315.806 kb on + strand at 316.255 kb on + strand, within HGI48_RS01410 at 316.255 kb on + strand, within HGI48_RS01410 at 316.255 kb on + strand, within HGI48_RS01410 at 316.255 kb on + strand, within HGI48_RS01410 at 316.256 kb on - strand, within HGI48_RS01410 at 316.340 kb on + strand at 316.340 kb on + strand at 316.400 kb on - strand at 316.416 kb on + strand at 316.416 kb on + strand at 316.416 kb on + strand at 316.416 kb on + strand at 316.416 kb on + strand at 316.417 kb on - strand at 316.417 kb on - strand at 316.417 kb on - strand at 316.427 kb on - strand at 316.438 kb on - strand at 316.438 kb on - strand at 316.482 kb on + strand at 316.482 kb on + strand at 316.482 kb on + strand at 316.483 kb on - strand at 316.483 kb on - strand at 316.498 kb on + strand at 316.524 kb on + strand at 316.524 kb on + strand at 316.525 kb on - strand at 316.715 kb on + strand, within HGI48_RS01415 at 316.716 kb on - strand, within HGI48_RS01415 at 316.718 kb on + strand, within HGI48_RS01415 at 316.719 kb on - strand, within HGI48_RS01415 at 316.809 kb on - strand, within HGI48_RS01415 at 316.993 kb on + strand, within HGI48_RS01415 at 316.994 kb on - strand, within HGI48_RS01415 at 316.994 kb on - strand, within HGI48_RS01415 at 317.003 kb on + strand, within HGI48_RS01415 at 317.003 kb on + strand, within HGI48_RS01415 at 317.035 kb on + strand, within HGI48_RS01415 at 317.035 kb on + strand, within HGI48_RS01415 at 317.035 kb on + strand, within HGI48_RS01415 at 317.035 kb on + strand, within HGI48_RS01415 at 317.048 kb on + strand, within HGI48_RS01415 at 317.048 kb on + strand, within HGI48_RS01415 at 317.048 kb on + strand at 317.048 kb on + strand, within HGI48_RS01415 at 317.118 kb on - strand at 317.118 kb on - strand, within HGI48_RS01415 at 317.123 kb on + strand, within HGI48_RS01415 at 317.123 kb on + strand, within HGI48_RS01415 at 317.124 kb on - strand, within HGI48_RS01415 at 317.192 kb on - strand, within HGI48_RS01415 at 317.306 kb on - strand, within HGI48_RS01415 at 317.306 kb on - strand, within HGI48_RS01415 at 317.317 kb on + strand, within HGI48_RS01415 at 317.317 kb on + strand, within HGI48_RS01415 at 317.318 kb on - strand, within HGI48_RS01415 at 317.318 kb on - strand, within HGI48_RS01415 at 317.318 kb on - strand, within HGI48_RS01415 at 317.472 kb on + strand, within HGI48_RS01415 at 317.473 kb on - strand, within HGI48_RS01415 at 317.498 kb on + strand, within HGI48_RS01415 at 317.498 kb on + strand, within HGI48_RS01415 at 317.498 kb on + strand, within HGI48_RS01415 at 317.499 kb on - strand, within HGI48_RS01415 at 317.499 kb on - strand, within HGI48_RS01415 at 317.499 kb on - strand, within HGI48_RS01415 at 317.499 kb on - strand, within HGI48_RS01415 at 317.551 kb on + strand, within HGI48_RS01415 at 317.551 kb on + strand, within HGI48_RS01415 at 317.552 kb on - strand, within HGI48_RS01415 at 317.666 kb on + strand, within HGI48_RS01415 at 317.755 kb on + strand at 317.756 kb on - strand at 317.756 kb on - strand at 317.756 kb on - strand at 317.756 kb on - strand at 317.756 kb on - strand at 317.853 kb on + strand at 317.853 kb on + strand at 317.853 kb on + strand at 317.855 kb on + strand at 317.855 kb on + strand at 317.855 kb on + strand at 317.855 kb on + strand at 317.855 kb on + strand at 317.855 kb on + strand at 317.856 kb on - strand at 317.856 kb on - strand at 317.856 kb on - strand at 317.856 kb on - strand at 317.856 kb on - strand at 317.856 kb on - strand at 317.862 kb on + strand at 317.862 kb on + strand at 317.863 kb on - strand at 317.863 kb on - strand at 317.863 kb on - strand at 317.934 kb on + strand at 317.934 kb on + strand at 317.935 kb on - strand at 317.935 kb on - strand at 317.935 kb on - strand at 318.016 kb on + strand, within HGI48_RS01420 at 318.016 kb on + strand, within HGI48_RS01420 at 318.016 kb on + strand at 318.017 kb on - strand, within HGI48_RS01420 at 318.017 kb on - strand, within HGI48_RS01420 at 318.017 kb on - strand, within HGI48_RS01420 at 318.017 kb on - strand, within HGI48_RS01420 at 318.017 kb on - strand, within HGI48_RS01420 at 318.121 kb on + strand, within HGI48_RS01420 at 318.121 kb on + strand, within HGI48_RS01420 at 318.122 kb on - strand, within HGI48_RS01420 at 318.122 kb on - strand, within HGI48_RS01420 at 318.328 kb on + strand at 318.334 kb on + strand at 318.334 kb on + strand at 318.335 kb on - strand at 318.335 kb on - strand at 318.335 kb on - strand at 318.356 kb on + strand at 318.357 kb on - strand at 318.364 kb on - strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.393 kb on + strand at 318.394 kb on - strand at 318.394 kb on - strand at 318.394 kb on - strand at 318.394 kb on - strand at 318.394 kb on - strand at 318.394 kb on - strand at 318.394 kb on - strand at 318.410 kb on - strand at 318.429 kb on + strand at 318.430 kb on - strand at 318.430 kb on - strand at 318.436 kb on + strand at 318.451 kb on + strand at 318.486 kb on + strand at 318.487 kb on - strand at 318.504 kb on + strand at 318.504 kb on + strand at 318.505 kb on - strand at 318.505 kb on - strand at 318.505 kb on - strand at 318.514 kb on + strand at 318.515 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 315,535 - -1.0 315,538 - -0.0 315,568 + -0.6 315,568 + -0.2 315,568 + +0.8 315,569 - -0.2 315,569 - +0.1 315,569 - +0.5 315,569 - -0.8 315,569 - -0.0 315,569 - -0.4 315,597 + -0.2 315,598 - +0.1 315,598 - -1.2 315,731 + -0.6 315,731 + -1.2 315,731 + +0.8 315,731 + +0.8 315,731 + -1.8 315,731 + +2.4 315,731 + -0.8 315,731 + +0.3 315,731 + +0.8 315,732 - -0.5 315,732 - -1.6 315,732 - +0.2 315,732 - +0.8 315,732 - +0.0 315,733 + -0.8 315,733 + +0.1 315,733 + -0.6 315,734 - +1.0 315,734 - +0.2 315,761 + -0.0 315,776 + +0.1 315,776 + +0.2 315,777 - -0.5 315,777 - +0.4 315,777 - -1.0 315,777 - +1.2 315,777 - -0.9 315,777 - -0.8 315,779 + -0.8 315,806 + -2.0 316,255 + HGI48_RS01410 0.87 +0.1 316,255 + HGI48_RS01410 0.87 -2.3 316,255 + HGI48_RS01410 0.87 -0.6 316,255 + HGI48_RS01410 0.87 -1.2 316,256 - HGI48_RS01410 0.87 +0.1 316,340 + +0.7 316,340 + -2.3 316,400 - -1.9 316,416 + -0.2 316,416 + -1.2 316,416 + -0.1 316,416 + -0.3 316,416 + -0.8 316,417 - +0.2 316,417 - +0.4 316,417 - -0.8 316,427 - +0.1 316,438 - -0.4 316,438 - -0.5 316,482 + +2.2 316,482 + -0.8 316,482 + +0.1 316,483 - -0.5 316,483 - -1.6 316,498 + -1.1 316,524 + -0.9 316,524 + -0.3 316,525 - -0.4 316,715 + HGI48_RS01415 0.15 +0.0 316,716 - HGI48_RS01415 0.15 +0.8 316,718 + HGI48_RS01415 0.15 +0.4 316,719 - HGI48_RS01415 0.15 +1.7 316,809 - HGI48_RS01415 0.22 -1.2 316,993 + HGI48_RS01415 0.35 +0.8 316,994 - HGI48_RS01415 0.36 -0.3 316,994 - HGI48_RS01415 0.36 +0.1 317,003 + HGI48_RS01415 0.36 -0.5 317,003 + HGI48_RS01415 0.36 -2.0 317,035 + HGI48_RS01415 0.39 +0.1 317,035 + HGI48_RS01415 0.39 -1.9 317,035 + HGI48_RS01415 0.39 -0.0 317,035 + HGI48_RS01415 0.39 -0.2 317,048 + HGI48_RS01415 0.40 +1.2 317,048 + HGI48_RS01415 0.40 -0.0 317,048 + +0.8 317,048 + HGI48_RS01415 0.40 +0.6 317,118 - +1.2 317,118 - HGI48_RS01415 0.45 -1.2 317,123 + HGI48_RS01415 0.45 +1.0 317,123 + HGI48_RS01415 0.45 -0.2 317,124 - HGI48_RS01415 0.45 -0.8 317,192 - HGI48_RS01415 0.50 +0.3 317,306 - HGI48_RS01415 0.59 -0.8 317,306 - HGI48_RS01415 0.59 -2.0 317,317 + HGI48_RS01415 0.60 -0.4 317,317 + HGI48_RS01415 0.60 -2.2 317,318 - HGI48_RS01415 0.60 +0.1 317,318 - HGI48_RS01415 0.60 -0.2 317,318 - HGI48_RS01415 0.60 -0.6 317,472 + HGI48_RS01415 0.71 +0.3 317,473 - HGI48_RS01415 0.71 -1.2 317,498 + HGI48_RS01415 0.73 +0.1 317,498 + HGI48_RS01415 0.73 -1.0 317,498 + HGI48_RS01415 0.73 +0.2 317,499 - HGI48_RS01415 0.73 -1.3 317,499 - HGI48_RS01415 0.73 -0.3 317,499 - HGI48_RS01415 0.73 +0.8 317,499 - HGI48_RS01415 0.73 -0.6 317,551 + HGI48_RS01415 0.77 -0.4 317,551 + HGI48_RS01415 0.77 +1.3 317,552 - HGI48_RS01415 0.77 -0.8 317,666 + HGI48_RS01415 0.86 -0.9 317,755 + -1.0 317,756 - -1.8 317,756 - -1.3 317,756 - +0.2 317,756 - -1.8 317,756 - +1.2 317,853 + +0.4 317,853 + -0.4 317,853 + -1.3 317,855 + +0.2 317,855 + -0.6 317,855 + +1.2 317,855 + +0.8 317,855 + +0.8 317,855 + -2.0 317,856 - +0.5 317,856 - -0.9 317,856 - -2.0 317,856 - +0.3 317,856 - +0.6 317,856 - +1.7 317,862 + -0.2 317,862 + -1.3 317,863 - +0.2 317,863 - -0.6 317,863 - -0.4 317,934 + +0.4 317,934 + +2.2 317,935 - -0.2 317,935 - +0.1 317,935 - +0.3 318,016 + HGI48_RS01420 0.22 +0.8 318,016 + HGI48_RS01420 0.22 -1.0 318,016 + +2.1 318,017 - HGI48_RS01420 0.23 +0.4 318,017 - HGI48_RS01420 0.23 -0.4 318,017 - HGI48_RS01420 0.23 +0.2 318,017 - HGI48_RS01420 0.23 +0.3 318,017 - HGI48_RS01420 0.23 +0.6 318,121 + HGI48_RS01420 0.48 +1.6 318,121 + HGI48_RS01420 0.48 +1.0 318,122 - HGI48_RS01420 0.48 -0.5 318,122 - HGI48_RS01420 0.48 -1.3 318,328 + +1.0 318,334 + -1.0 318,334 + +1.1 318,335 - -0.2 318,335 - +0.2 318,335 - -0.3 318,356 + +0.2 318,357 - -0.2 318,364 - -0.0 318,393 + -0.1 318,393 + -0.4 318,393 + -0.2 318,393 + -0.2 318,393 + +0.6 318,393 + +2.0 318,393 + +0.0 318,393 + +0.3 318,393 + -2.3 318,393 + -1.0 318,393 + +0.9 318,394 - +0.5 318,394 - +0.8 318,394 - +0.8 318,394 - +0.1 318,394 - +0.4 318,394 - -1.5 318,394 - -0.8 318,410 - -1.2 318,429 + +1.0 318,430 - -1.8 318,430 - -0.9 318,436 + -0.0 318,451 + -1.2 318,486 + +0.1 318,487 - +0.2 318,504 + +0.2 318,504 + +1.8 318,505 - +0.8 318,505 - -0.4 318,505 - +0.2 318,514 + -1.0 318,515 - +0.1
Or see this region's nucleotide sequence