Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01400 and HGI48_RS01405 are separated by 6 nucleotides HGI48_RS01405 and HGI48_RS01410 are separated by 293 nucleotides HGI48_RS01410 and HGI48_RS01415 are separated by 190 nucleotides
HGI48_RS01400: HGI48_RS01400 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 313,028 to 314,977
_RS01400
HGI48_RS01405: HGI48_RS01405 - DUF1543 domain-containing protein, at 314,984 to 315,484
_RS01405
HGI48_RS01410: HGI48_RS01410 - ribosome-associated protein, at 315,778 to 316,326
_RS01410
HGI48_RS01415: HGI48_RS01415 - metalloprotease PmbA, at 316,517 to 317,857
_RS01415
Position (kb) 315
316
317 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 314.873 kb on + strand at 314.873 kb on + strand at 314.873 kb on + strand at 314.873 kb on + strand at 314.874 kb on - strand at 314.874 kb on - strand at 314.956 kb on + strand at 314.957 kb on - strand at 314.986 kb on - strand at 314.997 kb on + strand at 315.245 kb on - strand at 315.292 kb on + strand at 315.292 kb on + strand at 315.293 kb on - strand, within HGI48_RS01405 at 315.293 kb on - strand at 315.297 kb on + strand, within HGI48_RS01405 at 315.297 kb on + strand, within HGI48_RS01405 at 315.298 kb on - strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand at 315.324 kb on + strand at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand at 315.328 kb on + strand, within HGI48_RS01405 at 315.462 kb on + strand at 315.462 kb on + strand at 315.462 kb on + strand at 315.463 kb on - strand at 315.463 kb on - strand at 315.463 kb on - strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.473 kb on + strand at 315.473 kb on + strand at 315.473 kb on + strand at 315.474 kb on - strand at 315.474 kb on - strand at 315.474 kb on - strand at 315.506 kb on + strand at 315.507 kb on - strand at 315.535 kb on - strand at 315.538 kb on - strand at 315.568 kb on + strand at 315.568 kb on + strand at 315.568 kb on + strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.597 kb on + strand at 315.598 kb on - strand at 315.598 kb on - strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.733 kb on + strand at 315.733 kb on + strand at 315.733 kb on + strand at 315.734 kb on - strand at 315.734 kb on - strand at 315.761 kb on + strand at 315.776 kb on + strand at 315.776 kb on + strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.779 kb on + strand at 315.806 kb on + strand at 316.255 kb on + strand, within HGI48_RS01410 at 316.255 kb on + strand, within HGI48_RS01410 at 316.255 kb on + strand, within HGI48_RS01410 at 316.255 kb on + strand, within HGI48_RS01410 at 316.256 kb on - strand, within HGI48_RS01410 at 316.340 kb on + strand at 316.340 kb on + strand at 316.400 kb on - strand at 316.416 kb on + strand at 316.416 kb on + strand at 316.416 kb on + strand at 316.416 kb on + strand at 316.416 kb on + strand at 316.417 kb on - strand at 316.417 kb on - strand at 316.417 kb on - strand at 316.427 kb on - strand at 316.438 kb on - strand at 316.438 kb on - strand at 316.482 kb on + strand at 316.482 kb on + strand at 316.482 kb on + strand at 316.483 kb on - strand at 316.483 kb on - strand at 316.498 kb on + strand at 316.524 kb on + strand at 316.524 kb on + strand at 316.525 kb on - strand at 316.715 kb on + strand, within HGI48_RS01415 at 316.716 kb on - strand, within HGI48_RS01415 at 316.718 kb on + strand, within HGI48_RS01415 at 316.719 kb on - strand, within HGI48_RS01415 at 316.809 kb on - strand, within HGI48_RS01415 at 316.993 kb on + strand, within HGI48_RS01415 at 316.994 kb on - strand, within HGI48_RS01415 at 316.994 kb on - strand, within HGI48_RS01415 at 317.003 kb on + strand, within HGI48_RS01415 at 317.003 kb on + strand, within HGI48_RS01415 at 317.035 kb on + strand, within HGI48_RS01415 at 317.035 kb on + strand, within HGI48_RS01415 at 317.035 kb on + strand, within HGI48_RS01415 at 317.035 kb on + strand, within HGI48_RS01415 at 317.048 kb on + strand, within HGI48_RS01415 at 317.048 kb on + strand, within HGI48_RS01415 at 317.048 kb on + strand at 317.048 kb on + strand, within HGI48_RS01415 at 317.118 kb on - strand at 317.118 kb on - strand, within HGI48_RS01415 at 317.123 kb on + strand, within HGI48_RS01415 at 317.123 kb on + strand, within HGI48_RS01415 at 317.124 kb on - strand, within HGI48_RS01415 at 317.192 kb on - strand, within HGI48_RS01415 at 317.306 kb on - strand, within HGI48_RS01415 at 317.306 kb on - strand, within HGI48_RS01415 at 317.317 kb on + strand, within HGI48_RS01415 at 317.317 kb on + strand, within HGI48_RS01415 at 317.318 kb on - strand, within HGI48_RS01415 at 317.318 kb on - strand, within HGI48_RS01415 at 317.318 kb on - strand, within HGI48_RS01415
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 314,873 + -0.5 314,873 + +1.7 314,873 + +1.7 314,873 + +0.8 314,874 - +0.5 314,874 - -0.8 314,956 + -0.2 314,957 - -0.5 314,986 - +0.2 314,997 + -0.1 315,245 - +2.1 315,292 + +1.8 315,292 + -0.8 315,293 - HGI48_RS01405 0.62 -0.3 315,293 - +1.6 315,297 + HGI48_RS01405 0.62 -0.2 315,297 + HGI48_RS01405 0.62 +0.2 315,298 - HGI48_RS01405 0.63 +1.3 315,324 + HGI48_RS01405 0.68 +0.2 315,324 + HGI48_RS01405 0.68 +0.0 315,324 + HGI48_RS01405 0.68 -0.0 315,324 + HGI48_RS01405 0.68 -1.8 315,324 + +0.2 315,324 + +2.8 315,324 + HGI48_RS01405 0.68 +0.1 315,324 + HGI48_RS01405 0.68 +0.1 315,325 - HGI48_RS01405 0.68 -0.7 315,325 - HGI48_RS01405 0.68 -2.3 315,325 - HGI48_RS01405 0.68 -0.2 315,325 - +1.2 315,325 - HGI48_RS01405 0.68 +0.3 315,325 - +1.2 315,328 + HGI48_RS01405 0.69 -1.2 315,462 + -0.8 315,462 + -1.0 315,462 + -0.2 315,463 - +0.2 315,463 - -0.2 315,463 - +1.1 315,465 + -1.0 315,465 + -1.2 315,465 + -0.2 315,465 + -1.8 315,465 + +0.5 315,465 + -1.9 315,465 + +1.4 315,469 + +0.3 315,469 + -0.2 315,469 + +0.0 315,469 + -0.2 315,469 + -1.5 315,469 + -0.7 315,469 + -2.8 315,469 + +0.6 315,469 + +1.5 315,469 + -2.0 315,469 + -0.3 315,469 + +0.2 315,470 - +0.2 315,470 - +0.2 315,470 - +0.8 315,470 - -2.2 315,470 - -0.5 315,470 - -0.2 315,470 - -0.8 315,470 - -0.1 315,470 - +1.8 315,470 - -0.6 315,473 + -1.2 315,473 + -1.5 315,473 + +0.6 315,474 - +1.5 315,474 - +0.4 315,474 - -0.8 315,506 + -0.5 315,507 - -0.5 315,535 - -1.0 315,538 - -0.0 315,568 + -0.6 315,568 + -0.2 315,568 + +0.8 315,569 - -0.2 315,569 - +0.1 315,569 - +0.5 315,569 - -0.8 315,569 - -0.0 315,569 - -0.4 315,597 + -0.2 315,598 - +0.1 315,598 - -1.2 315,731 + -0.6 315,731 + -1.2 315,731 + +0.8 315,731 + +0.8 315,731 + -1.8 315,731 + +2.4 315,731 + -0.8 315,731 + +0.3 315,731 + +0.8 315,732 - -0.5 315,732 - -1.6 315,732 - +0.2 315,732 - +0.8 315,732 - +0.0 315,733 + -0.8 315,733 + +0.1 315,733 + -0.6 315,734 - +1.0 315,734 - +0.2 315,761 + -0.0 315,776 + +0.1 315,776 + +0.2 315,777 - -0.5 315,777 - +0.4 315,777 - -1.0 315,777 - +1.2 315,777 - -0.9 315,777 - -0.8 315,779 + -0.8 315,806 + -2.0 316,255 + HGI48_RS01410 0.87 +0.1 316,255 + HGI48_RS01410 0.87 -2.3 316,255 + HGI48_RS01410 0.87 -0.6 316,255 + HGI48_RS01410 0.87 -1.2 316,256 - HGI48_RS01410 0.87 +0.1 316,340 + +0.7 316,340 + -2.3 316,400 - -1.9 316,416 + -0.2 316,416 + -1.2 316,416 + -0.1 316,416 + -0.3 316,416 + -0.8 316,417 - +0.2 316,417 - +0.4 316,417 - -0.8 316,427 - +0.1 316,438 - -0.4 316,438 - -0.5 316,482 + +2.2 316,482 + -0.8 316,482 + +0.1 316,483 - -0.5 316,483 - -1.6 316,498 + -1.1 316,524 + -0.9 316,524 + -0.3 316,525 - -0.4 316,715 + HGI48_RS01415 0.15 +0.0 316,716 - HGI48_RS01415 0.15 +0.8 316,718 + HGI48_RS01415 0.15 +0.4 316,719 - HGI48_RS01415 0.15 +1.7 316,809 - HGI48_RS01415 0.22 -1.2 316,993 + HGI48_RS01415 0.35 +0.8 316,994 - HGI48_RS01415 0.36 -0.3 316,994 - HGI48_RS01415 0.36 +0.1 317,003 + HGI48_RS01415 0.36 -0.5 317,003 + HGI48_RS01415 0.36 -2.0 317,035 + HGI48_RS01415 0.39 +0.1 317,035 + HGI48_RS01415 0.39 -1.9 317,035 + HGI48_RS01415 0.39 -0.0 317,035 + HGI48_RS01415 0.39 -0.2 317,048 + HGI48_RS01415 0.40 +1.2 317,048 + HGI48_RS01415 0.40 -0.0 317,048 + +0.8 317,048 + HGI48_RS01415 0.40 +0.6 317,118 - +1.2 317,118 - HGI48_RS01415 0.45 -1.2 317,123 + HGI48_RS01415 0.45 +1.0 317,123 + HGI48_RS01415 0.45 -0.2 317,124 - HGI48_RS01415 0.45 -0.8 317,192 - HGI48_RS01415 0.50 +0.3 317,306 - HGI48_RS01415 0.59 -0.8 317,306 - HGI48_RS01415 0.59 -2.0 317,317 + HGI48_RS01415 0.60 -0.4 317,317 + HGI48_RS01415 0.60 -2.2 317,318 - HGI48_RS01415 0.60 +0.1 317,318 - HGI48_RS01415 0.60 -0.2 317,318 - HGI48_RS01415 0.60 -0.6
Or see this region's nucleotide sequence