Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01280 and HGI48_RS01285 are separated by 245 nucleotides HGI48_RS01285 and HGI48_RS01290 are separated by 194 nucleotides HGI48_RS01290 and HGI48_RS01295 are separated by 23 nucleotides
HGI48_RS01280: HGI48_RS01280 - cupin domain-containing protein, at 286,875 to 287,270
_RS01280
HGI48_RS01285: HGI48_RS01285 - DUF1232 domain-containing protein, at 287,516 to 287,857
_RS01285
HGI48_RS01290: HGI48_RS01290 - DNA-binding transcriptional regulator Fis, at 288,052 to 288,348
_RS01290
HGI48_RS01295: HGI48_RS01295 - tRNA dihydrouridine synthase DusB, at 288,372 to 289,337
_RS01295
Position (kb) 288
289 Strain fitness (log2 ratio) -2
-1
0
1
2 at 287.268 kb on + strand at 287.268 kb on + strand at 287.295 kb on + strand at 287.295 kb on + strand at 287.295 kb on + strand at 287.295 kb on + strand at 287.295 kb on + strand at 287.296 kb on - strand at 287.296 kb on - strand at 287.296 kb on - strand at 287.315 kb on + strand at 287.315 kb on + strand at 287.315 kb on + strand at 287.315 kb on + strand at 287.316 kb on - strand at 287.316 kb on - strand at 287.316 kb on - strand at 287.316 kb on - strand at 287.387 kb on - strand at 287.390 kb on - strand at 287.390 kb on - strand at 287.400 kb on + strand at 287.469 kb on - strand at 287.474 kb on + strand at 287.475 kb on - strand at 287.475 kb on - strand at 287.478 kb on + strand at 287.479 kb on - strand at 287.501 kb on + strand at 287.502 kb on - strand at 287.502 kb on - strand at 287.502 kb on - strand at 287.512 kb on + strand at 287.512 kb on + strand at 287.513 kb on - strand at 287.513 kb on - strand at 287.545 kb on + strand at 287.546 kb on - strand at 287.559 kb on - strand, within HGI48_RS01285 at 287.574 kb on + strand, within HGI48_RS01285 at 287.574 kb on + strand, within HGI48_RS01285 at 287.574 kb on + strand, within HGI48_RS01285 at 287.575 kb on - strand, within HGI48_RS01285 at 287.575 kb on - strand, within HGI48_RS01285 at 287.575 kb on - strand, within HGI48_RS01285 at 287.583 kb on - strand, within HGI48_RS01285 at 287.623 kb on + strand, within HGI48_RS01285 at 287.623 kb on + strand, within HGI48_RS01285 at 287.625 kb on + strand, within HGI48_RS01285 at 287.625 kb on + strand, within HGI48_RS01285 at 287.626 kb on - strand at 287.626 kb on - strand, within HGI48_RS01285 at 287.666 kb on + strand, within HGI48_RS01285 at 287.667 kb on - strand, within HGI48_RS01285 at 287.676 kb on + strand, within HGI48_RS01285 at 287.676 kb on + strand, within HGI48_RS01285 at 287.676 kb on + strand, within HGI48_RS01285 at 287.677 kb on - strand, within HGI48_RS01285 at 287.677 kb on - strand, within HGI48_RS01285 at 287.682 kb on - strand, within HGI48_RS01285 at 287.691 kb on + strand, within HGI48_RS01285 at 287.691 kb on + strand, within HGI48_RS01285 at 287.691 kb on + strand, within HGI48_RS01285 at 287.691 kb on + strand, within HGI48_RS01285 at 287.691 kb on + strand, within HGI48_RS01285 at 287.691 kb on + strand, within HGI48_RS01285 at 287.691 kb on + strand, within HGI48_RS01285 at 287.691 kb on + strand, within HGI48_RS01285 at 287.691 kb on + strand, within HGI48_RS01285 at 287.692 kb on - strand, within HGI48_RS01285 at 287.692 kb on - strand, within HGI48_RS01285 at 287.692 kb on - strand, within HGI48_RS01285 at 287.692 kb on - strand, within HGI48_RS01285 at 287.692 kb on - strand at 287.692 kb on - strand, within HGI48_RS01285 at 287.692 kb on - strand, within HGI48_RS01285 at 287.692 kb on - strand, within HGI48_RS01285 at 287.692 kb on - strand, within HGI48_RS01285 at 287.692 kb on - strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.693 kb on + strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.694 kb on - strand, within HGI48_RS01285 at 287.695 kb on + strand at 287.695 kb on + strand at 287.695 kb on + strand, within HGI48_RS01285 at 287.695 kb on + strand, within HGI48_RS01285 at 287.695 kb on + strand, within HGI48_RS01285 at 287.696 kb on - strand, within HGI48_RS01285 at 287.696 kb on - strand, within HGI48_RS01285 at 287.696 kb on - strand, within HGI48_RS01285 at 287.696 kb on - strand, within HGI48_RS01285 at 287.699 kb on - strand, within HGI48_RS01285 at 287.699 kb on - strand, within HGI48_RS01285 at 287.744 kb on + strand, within HGI48_RS01285 at 287.750 kb on + strand, within HGI48_RS01285 at 287.750 kb on + strand, within HGI48_RS01285 at 287.751 kb on - strand, within HGI48_RS01285 at 287.751 kb on - strand at 287.790 kb on + strand, within HGI48_RS01285 at 287.790 kb on + strand, within HGI48_RS01285 at 287.790 kb on + strand, within HGI48_RS01285 at 287.795 kb on - strand, within HGI48_RS01285 at 287.815 kb on + strand, within HGI48_RS01285 at 287.861 kb on + strand at 287.861 kb on + strand at 287.862 kb on - strand at 287.868 kb on + strand at 287.869 kb on - strand at 287.877 kb on + strand at 287.877 kb on + strand at 287.877 kb on + strand at 287.878 kb on - strand at 287.891 kb on - strand at 287.896 kb on - strand at 287.917 kb on - strand at 287.920 kb on + strand at 287.922 kb on + strand at 287.923 kb on - strand at 287.963 kb on + strand at 287.963 kb on + strand at 287.963 kb on + strand at 287.963 kb on + strand at 287.963 kb on + strand at 287.963 kb on + strand at 287.964 kb on - strand at 287.964 kb on - strand at 287.964 kb on - strand at 287.968 kb on + strand at 287.968 kb on + strand at 287.969 kb on - strand at 287.973 kb on + strand at 287.973 kb on + strand at 287.973 kb on + strand at 287.973 kb on + strand at 287.973 kb on + strand at 287.974 kb on - strand at 287.974 kb on - strand at 287.974 kb on - strand at 287.974 kb on - strand at 287.974 kb on - strand at 287.974 kb on - strand at 287.974 kb on - strand at 287.974 kb on - strand at 287.974 kb on - strand at 288.103 kb on - strand at 288.143 kb on + strand, within HGI48_RS01290 at 288.143 kb on + strand, within HGI48_RS01290 at 288.175 kb on + strand, within HGI48_RS01290 at 288.175 kb on + strand, within HGI48_RS01290 at 288.301 kb on + strand, within HGI48_RS01290 at 288.320 kb on - strand at 288.320 kb on - strand at 288.320 kb on - strand at 288.348 kb on + strand at 288.391 kb on + strand at 288.429 kb on + strand at 288.498 kb on - strand, within HGI48_RS01295 at 288.529 kb on + strand, within HGI48_RS01295 at 288.530 kb on - strand, within HGI48_RS01295 at 288.550 kb on - strand, within HGI48_RS01295 at 288.552 kb on - strand, within HGI48_RS01295 at 288.552 kb on - strand, within HGI48_RS01295 at 288.552 kb on - strand, within HGI48_RS01295 at 288.620 kb on - strand, within HGI48_RS01295 at 288.620 kb on - strand, within HGI48_RS01295 at 288.670 kb on - strand, within HGI48_RS01295 at 288.670 kb on - strand, within HGI48_RS01295 at 288.694 kb on + strand, within HGI48_RS01295 at 288.729 kb on - strand, within HGI48_RS01295 at 288.770 kb on + strand, within HGI48_RS01295 at 288.770 kb on + strand, within HGI48_RS01295 at 288.771 kb on - strand, within HGI48_RS01295 at 288.771 kb on - strand, within HGI48_RS01295 at 288.790 kb on + strand, within HGI48_RS01295 at 288.790 kb on + strand, within HGI48_RS01295 at 288.791 kb on - strand, within HGI48_RS01295 at 288.852 kb on - strand, within HGI48_RS01295 at 288.891 kb on - strand, within HGI48_RS01295 at 288.891 kb on - strand, within HGI48_RS01295 at 288.891 kb on - strand, within HGI48_RS01295 at 288.891 kb on - strand, within HGI48_RS01295 at 288.891 kb on - strand, within HGI48_RS01295 at 288.892 kb on - strand, within HGI48_RS01295 at 288.943 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295 at 289.162 kb on - strand, within HGI48_RS01295
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 287,268 + -0.9 287,268 + -0.7 287,295 + -0.5 287,295 + -0.5 287,295 + -0.0 287,295 + +0.1 287,295 + +0.8 287,296 - -0.3 287,296 - -0.7 287,296 - -0.8 287,315 + -0.6 287,315 + -0.1 287,315 + +1.0 287,315 + +0.3 287,316 - -0.3 287,316 - -0.8 287,316 - +0.3 287,316 - -0.8 287,387 - +1.8 287,390 - -0.8 287,390 - -0.4 287,400 + +0.8 287,469 - -1.5 287,474 + -0.2 287,475 - +1.6 287,475 - +1.8 287,478 + +0.8 287,479 - -0.3 287,501 + +1.6 287,502 - +1.2 287,502 - +0.2 287,502 - +0.0 287,512 + -0.5 287,512 + -0.4 287,513 - -0.3 287,513 - +0.0 287,545 + +0.1 287,546 - -0.3 287,559 - HGI48_RS01285 0.13 -0.0 287,574 + HGI48_RS01285 0.17 +1.0 287,574 + HGI48_RS01285 0.17 -0.3 287,574 + HGI48_RS01285 0.17 -0.6 287,575 - HGI48_RS01285 0.17 -0.3 287,575 - HGI48_RS01285 0.17 -0.4 287,575 - HGI48_RS01285 0.17 +0.5 287,583 - HGI48_RS01285 0.20 +0.8 287,623 + HGI48_RS01285 0.31 +0.2 287,623 + HGI48_RS01285 0.31 +1.3 287,625 + HGI48_RS01285 0.32 +1.3 287,625 + HGI48_RS01285 0.32 +0.5 287,626 - +1.6 287,626 - HGI48_RS01285 0.32 -0.4 287,666 + HGI48_RS01285 0.44 +0.1 287,667 - HGI48_RS01285 0.44 +0.0 287,676 + HGI48_RS01285 0.47 +0.2 287,676 + HGI48_RS01285 0.47 -1.6 287,676 + HGI48_RS01285 0.47 -1.0 287,677 - HGI48_RS01285 0.47 -1.6 287,677 - HGI48_RS01285 0.47 -1.0 287,682 - HGI48_RS01285 0.49 +0.2 287,691 + HGI48_RS01285 0.51 -0.2 287,691 + HGI48_RS01285 0.51 +0.5 287,691 + HGI48_RS01285 0.51 +0.1 287,691 + HGI48_RS01285 0.51 -0.2 287,691 + HGI48_RS01285 0.51 -1.0 287,691 + HGI48_RS01285 0.51 -0.1 287,691 + HGI48_RS01285 0.51 -0.1 287,691 + HGI48_RS01285 0.51 +1.5 287,691 + HGI48_RS01285 0.51 -0.0 287,692 - HGI48_RS01285 0.51 +0.2 287,692 - HGI48_RS01285 0.51 +0.2 287,692 - HGI48_RS01285 0.51 -1.4 287,692 - HGI48_RS01285 0.51 +0.1 287,692 - +2.4 287,692 - HGI48_RS01285 0.51 +0.8 287,692 - HGI48_RS01285 0.51 -0.2 287,692 - HGI48_RS01285 0.51 -0.2 287,692 - HGI48_RS01285 0.51 -0.3 287,692 - HGI48_RS01285 0.51 +0.6 287,693 + HGI48_RS01285 0.52 +1.5 287,693 + HGI48_RS01285 0.52 +0.1 287,693 + HGI48_RS01285 0.52 +0.1 287,693 + HGI48_RS01285 0.52 -1.8 287,693 + HGI48_RS01285 0.52 -0.8 287,693 + HGI48_RS01285 0.52 -0.2 287,693 + HGI48_RS01285 0.52 -0.4 287,693 + HGI48_RS01285 0.52 -0.9 287,693 + HGI48_RS01285 0.52 -0.0 287,693 + HGI48_RS01285 0.52 +0.4 287,693 + HGI48_RS01285 0.52 -0.6 287,693 + HGI48_RS01285 0.52 -1.2 287,693 + HGI48_RS01285 0.52 +0.3 287,693 + +0.8 287,693 + HGI48_RS01285 0.52 +0.1 287,693 + HGI48_RS01285 0.52 +0.4 287,693 + HGI48_RS01285 0.52 -0.5 287,693 + HGI48_RS01285 0.52 +0.2 287,693 + HGI48_RS01285 0.52 +1.1 287,694 - HGI48_RS01285 0.52 -0.7 287,694 - HGI48_RS01285 0.52 -1.5 287,694 - HGI48_RS01285 0.52 -0.2 287,694 - HGI48_RS01285 0.52 -0.4 287,694 - HGI48_RS01285 0.52 -0.2 287,694 - HGI48_RS01285 0.52 -1.0 287,694 - HGI48_RS01285 0.52 -0.4 287,694 - HGI48_RS01285 0.52 -0.8 287,694 - HGI48_RS01285 0.52 -0.3 287,694 - HGI48_RS01285 0.52 +0.7 287,694 - HGI48_RS01285 0.52 -0.2 287,695 + +1.4 287,695 + +0.8 287,695 + HGI48_RS01285 0.52 -0.0 287,695 + HGI48_RS01285 0.52 +0.2 287,695 + HGI48_RS01285 0.52 +0.6 287,696 - HGI48_RS01285 0.53 +1.5 287,696 - HGI48_RS01285 0.53 -1.2 287,696 - HGI48_RS01285 0.53 -1.3 287,696 - HGI48_RS01285 0.53 +0.6 287,699 - HGI48_RS01285 0.54 -0.5 287,699 - HGI48_RS01285 0.54 -0.5 287,744 + HGI48_RS01285 0.67 +0.6 287,750 + HGI48_RS01285 0.68 -0.7 287,750 + HGI48_RS01285 0.68 -0.4 287,751 - HGI48_RS01285 0.69 -0.0 287,751 - +1.2 287,790 + HGI48_RS01285 0.80 -0.5 287,790 + HGI48_RS01285 0.80 -2.1 287,790 + HGI48_RS01285 0.80 -0.1 287,795 - HGI48_RS01285 0.82 -0.5 287,815 + HGI48_RS01285 0.87 -0.2 287,861 + -0.5 287,861 + +1.6 287,862 - +0.3 287,868 + +0.8 287,869 - +0.1 287,877 + +0.0 287,877 + +0.4 287,877 + -1.7 287,878 - -0.5 287,891 - -1.5 287,896 - -1.2 287,917 - +0.6 287,920 + +0.1 287,922 + -0.2 287,923 - +1.4 287,963 + -0.3 287,963 + -0.3 287,963 + -1.2 287,963 + +0.2 287,963 + +0.8 287,963 + -0.2 287,964 - +0.4 287,964 - -0.2 287,964 - -1.0 287,968 + -1.5 287,968 + +0.8 287,969 - -0.4 287,973 + -0.9 287,973 + +0.0 287,973 + -0.6 287,973 + +1.2 287,973 + +0.8 287,974 - +0.0 287,974 - +0.3 287,974 - +0.6 287,974 - +1.4 287,974 - -0.8 287,974 - +0.5 287,974 - -0.3 287,974 - -0.5 287,974 - +0.8 288,103 - -0.8 288,143 + HGI48_RS01290 0.31 -2.2 288,143 + HGI48_RS01290 0.31 -2.2 288,175 + HGI48_RS01290 0.41 -2.2 288,175 + HGI48_RS01290 0.41 -1.9 288,301 + HGI48_RS01290 0.84 +0.6 288,320 - -0.8 288,320 - +1.0 288,320 - -1.3 288,348 + -0.2 288,391 + -0.2 288,429 + -1.4 288,498 - HGI48_RS01295 0.13 -0.5 288,529 + HGI48_RS01295 0.16 -1.0 288,530 - HGI48_RS01295 0.16 -1.2 288,550 - HGI48_RS01295 0.18 -1.5 288,552 - HGI48_RS01295 0.19 +0.6 288,552 - HGI48_RS01295 0.19 +0.6 288,552 - HGI48_RS01295 0.19 -1.6 288,620 - HGI48_RS01295 0.26 +0.2 288,620 - HGI48_RS01295 0.26 -1.5 288,670 - HGI48_RS01295 0.31 +0.8 288,670 - HGI48_RS01295 0.31 +0.2 288,694 + HGI48_RS01295 0.33 +0.2 288,729 - HGI48_RS01295 0.37 +0.3 288,770 + HGI48_RS01295 0.41 +1.2 288,770 + HGI48_RS01295 0.41 -1.2 288,771 - HGI48_RS01295 0.41 -0.4 288,771 - HGI48_RS01295 0.41 -0.8 288,790 + HGI48_RS01295 0.43 -1.2 288,790 + HGI48_RS01295 0.43 -0.5 288,791 - HGI48_RS01295 0.43 -0.3 288,852 - HGI48_RS01295 0.50 -0.0 288,891 - HGI48_RS01295 0.54 -0.8 288,891 - HGI48_RS01295 0.54 +1.1 288,891 - HGI48_RS01295 0.54 +0.5 288,891 - HGI48_RS01295 0.54 -0.3 288,891 - HGI48_RS01295 0.54 +0.2 288,892 - HGI48_RS01295 0.54 +0.1 288,943 - HGI48_RS01295 0.59 -1.2 289,162 - HGI48_RS01295 0.82 -1.2 289,162 - HGI48_RS01295 0.82 -0.9 289,162 - HGI48_RS01295 0.82 -1.0 289,162 - HGI48_RS01295 0.82 +0.4 289,162 - HGI48_RS01295 0.82 +1.3 289,162 - HGI48_RS01295 0.82 +0.4 289,162 - HGI48_RS01295 0.82 +0.7 289,162 - HGI48_RS01295 0.82 -0.3 289,162 - HGI48_RS01295 0.82 -0.3 289,162 - HGI48_RS01295 0.82 -0.2
Or see this region's nucleotide sequence