Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01185 and HGI48_RS01190 overlap by 1 nucleotides HGI48_RS01190 and HGI48_RS01195 are separated by 91 nucleotides HGI48_RS01195 and HGI48_RS01200 are separated by 311 nucleotides
HGI48_RS01185: HGI48_RS01185 - uroporphyrinogen decarboxylase, at 265,369 to 266,442
_RS01185
HGI48_RS01190: HGI48_RS01190 - deoxyribonuclease V, at 266,442 to 267,116
_RS01190
HGI48_RS01195: HGI48_RS01195 - YjaG family protein, at 267,208 to 267,798
_RS01195
HGI48_RS01200: HGI48_RS01200 - DNA-binding protein HU-alpha, at 268,110 to 268,382
_RS01200
Position (kb) 266
267
268 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 266.422 kb on + strand at 266.448 kb on - strand at 266.507 kb on + strand at 266.507 kb on + strand at 266.507 kb on + strand at 266.507 kb on + strand at 266.508 kb on - strand at 266.508 kb on - strand at 266.625 kb on + strand, within HGI48_RS01190 at 266.626 kb on - strand at 266.640 kb on - strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.660 kb on + strand, within HGI48_RS01190 at 266.660 kb on + strand, within HGI48_RS01190 at 266.660 kb on + strand, within HGI48_RS01190 at 266.660 kb on + strand, within HGI48_RS01190 at 266.661 kb on - strand, within HGI48_RS01190 at 266.661 kb on - strand, within HGI48_RS01190 at 266.661 kb on - strand, within HGI48_RS01190 at 266.661 kb on - strand, within HGI48_RS01190 at 267.114 kb on + strand at 267.114 kb on + strand at 267.115 kb on - strand at 267.115 kb on - strand at 267.115 kb on - strand at 267.115 kb on - strand at 267.140 kb on - strand at 267.151 kb on + strand at 267.151 kb on + strand at 267.151 kb on + strand at 267.153 kb on + strand at 267.176 kb on + strand at 267.188 kb on + strand at 267.188 kb on + strand at 267.188 kb on + strand at 267.191 kb on + strand at 267.191 kb on + strand at 267.191 kb on + strand at 267.192 kb on - strand at 267.192 kb on - strand at 267.202 kb on + strand at 267.203 kb on - strand at 267.213 kb on - strand at 267.291 kb on + strand, within HGI48_RS01195 at 267.291 kb on + strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.295 kb on + strand, within HGI48_RS01195 at 267.304 kb on + strand, within HGI48_RS01195 at 267.304 kb on + strand, within HGI48_RS01195 at 267.305 kb on - strand, within HGI48_RS01195 at 267.305 kb on - strand, within HGI48_RS01195 at 267.308 kb on - strand at 267.358 kb on - strand, within HGI48_RS01195 at 267.476 kb on + strand, within HGI48_RS01195 at 267.476 kb on + strand, within HGI48_RS01195 at 267.732 kb on - strand at 267.790 kb on + strand at 267.804 kb on + strand at 267.816 kb on + strand at 267.816 kb on + strand at 267.817 kb on - strand at 267.817 kb on - strand at 267.839 kb on + strand at 267.868 kb on + strand at 267.923 kb on + strand at 267.923 kb on + strand at 267.938 kb on - strand at 267.984 kb on + strand at 267.984 kb on + strand at 267.992 kb on + strand at 267.992 kb on + strand at 267.992 kb on + strand at 268.040 kb on + strand at 268.040 kb on + strand at 268.040 kb on + strand at 268.040 kb on + strand at 268.041 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 266,422 + -0.0 266,448 - -2.2 266,507 + +0.6 266,507 + -1.8 266,507 + -0.6 266,507 + -1.0 266,508 - +1.4 266,508 - -0.4 266,625 + HGI48_RS01190 0.27 +0.1 266,626 - +1.2 266,640 - HGI48_RS01190 0.29 +0.8 266,658 + HGI48_RS01190 0.32 +0.5 266,658 + HGI48_RS01190 0.32 +1.4 266,658 + HGI48_RS01190 0.32 -1.3 266,658 + HGI48_RS01190 0.32 +0.6 266,658 + HGI48_RS01190 0.32 -0.4 266,658 + HGI48_RS01190 0.32 -1.5 266,658 + HGI48_RS01190 0.32 +1.3 266,658 + HGI48_RS01190 0.32 -0.3 266,658 + HGI48_RS01190 0.32 -1.8 266,658 + HGI48_RS01190 0.32 +0.1 266,658 + HGI48_RS01190 0.32 +0.4 266,658 + HGI48_RS01190 0.32 +0.8 266,658 + HGI48_RS01190 0.32 -1.3 266,658 + HGI48_RS01190 0.32 +0.8 266,658 + HGI48_RS01190 0.32 -0.2 266,658 + +0.8 266,658 + HGI48_RS01190 0.32 -0.3 266,658 + HGI48_RS01190 0.32 +1.1 266,658 + HGI48_RS01190 0.32 -0.8 266,658 + HGI48_RS01190 0.32 -0.6 266,658 + HGI48_RS01190 0.32 -0.6 266,659 - HGI48_RS01190 0.32 +0.5 266,659 - HGI48_RS01190 0.32 -0.4 266,659 - HGI48_RS01190 0.32 -1.0 266,659 - HGI48_RS01190 0.32 -0.4 266,659 - HGI48_RS01190 0.32 +0.4 266,659 - +2.8 266,659 - HGI48_RS01190 0.32 +1.5 266,659 - HGI48_RS01190 0.32 -1.4 266,659 - +1.2 266,659 - HGI48_RS01190 0.32 +0.4 266,659 - HGI48_RS01190 0.32 -1.2 266,659 - HGI48_RS01190 0.32 -0.6 266,659 - HGI48_RS01190 0.32 -0.2 266,659 - HGI48_RS01190 0.32 -2.2 266,659 - HGI48_RS01190 0.32 -1.6 266,660 + HGI48_RS01190 0.32 -1.8 266,660 + HGI48_RS01190 0.32 -0.9 266,660 + HGI48_RS01190 0.32 +0.0 266,660 + HGI48_RS01190 0.32 -0.2 266,661 - HGI48_RS01190 0.32 -0.2 266,661 - HGI48_RS01190 0.32 -1.5 266,661 - HGI48_RS01190 0.32 -0.3 266,661 - HGI48_RS01190 0.32 -0.6 267,114 + -0.6 267,114 + -0.2 267,115 - -2.0 267,115 - +0.3 267,115 - +1.1 267,115 - +1.0 267,140 - +0.4 267,151 + -0.8 267,151 + -0.3 267,151 + +1.4 267,153 + -0.2 267,176 + -0.2 267,188 + +1.3 267,188 + -1.6 267,188 + +0.2 267,191 + -1.2 267,191 + +0.4 267,191 + +2.0 267,192 - +0.4 267,192 - -1.2 267,202 + +0.3 267,203 - -1.5 267,213 - +1.4 267,291 + HGI48_RS01195 0.14 -0.2 267,291 + HGI48_RS01195 0.14 +0.1 267,292 - HGI48_RS01195 0.14 -1.5 267,292 - HGI48_RS01195 0.14 -2.2 267,292 - HGI48_RS01195 0.14 -1.8 267,292 - HGI48_RS01195 0.14 +0.8 267,292 - HGI48_RS01195 0.14 -0.0 267,292 - HGI48_RS01195 0.14 -0.2 267,292 - HGI48_RS01195 0.14 -1.8 267,292 - HGI48_RS01195 0.14 -0.3 267,292 - HGI48_RS01195 0.14 +0.8 267,292 - HGI48_RS01195 0.14 -1.2 267,295 + HGI48_RS01195 0.15 +0.8 267,304 + HGI48_RS01195 0.16 -1.3 267,304 + HGI48_RS01195 0.16 -0.8 267,305 - HGI48_RS01195 0.16 +1.0 267,305 - HGI48_RS01195 0.16 -0.1 267,308 - +0.2 267,358 - HGI48_RS01195 0.25 -1.1 267,476 + HGI48_RS01195 0.45 +1.1 267,476 + HGI48_RS01195 0.45 -0.7 267,732 - +2.4 267,790 + -1.8 267,804 + +0.1 267,816 + +0.6 267,816 + +1.0 267,817 - +0.5 267,817 - +1.1 267,839 + -0.2 267,868 + +0.2 267,923 + -0.2 267,923 + +0.8 267,938 - -0.2 267,984 + -0.7 267,984 + -0.8 267,992 + -0.0 267,992 + +3.1 267,992 + +0.8 268,040 + -1.5 268,040 + -2.3 268,040 + +1.2 268,040 + -0.2 268,041 - -2.5
Or see this region's nucleotide sequence