Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00990

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS00980 and HGI48_RS00985 overlap by 1 nucleotidesHGI48_RS00985 and HGI48_RS00990 are separated by 41 nucleotidesHGI48_RS00990 and HGI48_RS00995 are separated by 18 nucleotidesHGI48_RS00995 and HGI48_RS01000 are separated by 373 nucleotides HGI48_RS00980: HGI48_RS00980 - Xaa-Pro dipeptidase, at 222,464 to 223,795 _RS00980 HGI48_RS00985: HGI48_RS00985 - IMPACT family protein, at 223,795 to 224,409 _RS00985 HGI48_RS00990: HGI48_RS00990 - Trk system potassium transporter TrkH, at 224,451 to 225,902 _RS00990 HGI48_RS00995: HGI48_RS00995 - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 225,921 to 226,460 _RS00995 HGI48_RS01000: HGI48_RS01000 - 16S ribosomal RNA, at 226,834 to 228,378 _RS01000 Position (kb) 224 225 226Strain fitness (log2 ratio) -2 -1 0 1 2at 223.516 kb on + strand, within HGI48_RS00980at 223.516 kb on + strand, within HGI48_RS00980at 223.516 kb on + strand, within HGI48_RS00980at 223.517 kb on - strand, within HGI48_RS00980at 223.517 kb on - strand, within HGI48_RS00980at 223.517 kb on - strand, within HGI48_RS00980at 223.565 kb on + strandat 223.566 kb on - strand, within HGI48_RS00980at 223.566 kb on - strand, within HGI48_RS00980at 223.576 kb on + strand, within HGI48_RS00980at 223.609 kb on + strandat 223.625 kb on + strand, within HGI48_RS00980at 223.625 kb on + strand, within HGI48_RS00980at 223.625 kb on + strand, within HGI48_RS00980at 223.625 kb on + strand, within HGI48_RS00980at 223.625 kb on + strand, within HGI48_RS00980at 223.625 kb on + strand, within HGI48_RS00980at 223.626 kb on - strand, within HGI48_RS00980at 223.626 kb on - strand, within HGI48_RS00980at 223.626 kb on - strand, within HGI48_RS00980at 223.626 kb on - strand, within HGI48_RS00980at 223.626 kb on - strand, within HGI48_RS00980at 223.626 kb on - strandat 223.746 kb on + strandat 223.747 kb on - strandat 223.747 kb on - strandat 223.747 kb on - strandat 223.845 kb on + strandat 223.845 kb on + strandat 223.960 kb on + strand, within HGI48_RS00985at 223.960 kb on + strand, within HGI48_RS00985at 223.961 kb on - strand, within HGI48_RS00985at 223.961 kb on - strand, within HGI48_RS00985at 223.961 kb on - strand, within HGI48_RS00985at 223.961 kb on - strand, within HGI48_RS00985at 223.961 kb on - strand, within HGI48_RS00985at 223.961 kb on - strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.093 kb on + strand, within HGI48_RS00985at 224.094 kb on - strand, within HGI48_RS00985at 224.094 kb on - strand, within HGI48_RS00985at 224.094 kb on - strand, within HGI48_RS00985at 224.098 kb on + strand, within HGI48_RS00985at 224.101 kb on + strand, within HGI48_RS00985at 224.102 kb on - strand, within HGI48_RS00985at 224.102 kb on - strand, within HGI48_RS00985at 224.122 kb on - strand, within HGI48_RS00985at 224.143 kb on + strand, within HGI48_RS00985at 224.144 kb on - strand, within HGI48_RS00985at 224.227 kb on + strand, within HGI48_RS00985at 224.227 kb on + strand, within HGI48_RS00985at 224.294 kb on - strand, within HGI48_RS00985at 224.368 kb on - strandat 224.407 kb on + strandat 224.408 kb on - strandat 224.420 kb on + strandat 224.420 kb on + strandat 224.421 kb on - strandat 224.435 kb on + strandat 224.435 kb on + strandat 224.436 kb on - strandat 224.436 kb on - strandat 224.468 kb on - strandat 224.542 kb on - strandat 224.662 kb on + strand, within HGI48_RS00990at 224.662 kb on + strand, within HGI48_RS00990at 224.967 kb on - strand, within HGI48_RS00990at 225.015 kb on + strand, within HGI48_RS00990at 225.019 kb on + strand, within HGI48_RS00990at 225.020 kb on - strand, within HGI48_RS00990at 225.020 kb on - strand, within HGI48_RS00990at 225.020 kb on - strand, within HGI48_RS00990at 225.098 kb on + strand, within HGI48_RS00990at 225.099 kb on - strandat 225.099 kb on - strand, within HGI48_RS00990at 225.165 kb on - strand, within HGI48_RS00990at 225.168 kb on - strand, within HGI48_RS00990at 225.174 kb on - strand, within HGI48_RS00990at 225.203 kb on + strandat 225.204 kb on - strand, within HGI48_RS00990at 225.252 kb on + strand, within HGI48_RS00990at 225.282 kb on - strandat 225.342 kb on + strand, within HGI48_RS00990at 225.393 kb on - strand, within HGI48_RS00990at 225.589 kb on - strand, within HGI48_RS00990at 225.596 kb on + strand, within HGI48_RS00990at 225.596 kb on + strand, within HGI48_RS00990at 225.831 kb on - strandat 225.831 kb on - strandat 225.831 kb on - strandat 225.875 kb on - strandat 225.875 kb on - strandat 225.879 kb on - strandat 225.879 kb on - strandat 225.900 kb on + strandat 225.920 kb on + strandat 225.920 kb on + strandat 226.458 kb on + strandat 226.458 kb on + strandat 226.459 kb on - strandat 226.549 kb on - strandat 226.645 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
223,516 + HGI48_RS00980 0.79 +0.4
223,516 + HGI48_RS00980 0.79 -1.2
223,516 + HGI48_RS00980 0.79 -0.0
223,517 - HGI48_RS00980 0.79 +0.9
223,517 - HGI48_RS00980 0.79 -0.4
223,517 - HGI48_RS00980 0.79 +0.0
223,565 + +1.6
223,566 - HGI48_RS00980 0.83 +0.8
223,566 - HGI48_RS00980 0.83 -1.5
223,576 + HGI48_RS00980 0.83 +0.6
223,609 + +1.3
223,625 + HGI48_RS00980 0.87 -0.6
223,625 + HGI48_RS00980 0.87 +1.2
223,625 + HGI48_RS00980 0.87 -0.0
223,625 + HGI48_RS00980 0.87 -0.2
223,625 + HGI48_RS00980 0.87 +0.8
223,625 + HGI48_RS00980 0.87 -0.6
223,626 - HGI48_RS00980 0.87 +0.3
223,626 - HGI48_RS00980 0.87 +0.3
223,626 - HGI48_RS00980 0.87 +0.4
223,626 - HGI48_RS00980 0.87 -0.3
223,626 - HGI48_RS00980 0.87 -0.9
223,626 - +0.8
223,746 + -1.4
223,747 - -1.0
223,747 - +0.3
223,747 - -0.3
223,845 + -0.3
223,845 + +0.6
223,960 + HGI48_RS00985 0.27 -0.4
223,960 + HGI48_RS00985 0.27 -2.3
223,961 - HGI48_RS00985 0.27 +0.1
223,961 - HGI48_RS00985 0.27 +0.6
223,961 - HGI48_RS00985 0.27 +1.3
223,961 - HGI48_RS00985 0.27 -0.2
223,961 - HGI48_RS00985 0.27 +0.8
223,961 - HGI48_RS00985 0.27 -0.8
224,093 + HGI48_RS00985 0.48 -0.9
224,093 + HGI48_RS00985 0.48 +1.3
224,093 + HGI48_RS00985 0.48 +0.2
224,093 + HGI48_RS00985 0.48 +0.5
224,093 + HGI48_RS00985 0.48 -2.0
224,093 + HGI48_RS00985 0.48 +0.2
224,093 + HGI48_RS00985 0.48 +0.8
224,093 + HGI48_RS00985 0.48 +0.1
224,093 + HGI48_RS00985 0.48 -0.7
224,093 + HGI48_RS00985 0.48 +0.0
224,094 - HGI48_RS00985 0.49 +0.1
224,094 - HGI48_RS00985 0.49 +0.1
224,094 - HGI48_RS00985 0.49 -0.4
224,098 + HGI48_RS00985 0.49 -1.5
224,101 + HGI48_RS00985 0.50 +0.6
224,102 - HGI48_RS00985 0.50 +0.5
224,102 - HGI48_RS00985 0.50 -0.6
224,122 - HGI48_RS00985 0.53 +1.1
224,143 + HGI48_RS00985 0.57 -0.7
224,144 - HGI48_RS00985 0.57 -1.7
224,227 + HGI48_RS00985 0.70 -1.2
224,227 + HGI48_RS00985 0.70 -0.4
224,294 - HGI48_RS00985 0.81 -0.0
224,368 - -1.2
224,407 + -0.6
224,408 - -0.2
224,420 + -0.5
224,420 + +0.1
224,421 - -1.9
224,435 + -1.0
224,435 + -1.7
224,436 - -1.2
224,436 - +0.6
224,468 - -0.2
224,542 - -0.7
224,662 + HGI48_RS00990 0.15 +0.3
224,662 + HGI48_RS00990 0.15 +0.4
224,967 - HGI48_RS00990 0.36 -0.9
225,015 + HGI48_RS00990 0.39 -1.5
225,019 + HGI48_RS00990 0.39 -0.9
225,020 - HGI48_RS00990 0.39 -0.6
225,020 - HGI48_RS00990 0.39 +0.8
225,020 - HGI48_RS00990 0.39 -1.5
225,098 + HGI48_RS00990 0.45 +0.4
225,099 - -0.7
225,099 - HGI48_RS00990 0.45 +0.8
225,165 - HGI48_RS00990 0.49 -1.0
225,168 - HGI48_RS00990 0.49 +0.6
225,174 - HGI48_RS00990 0.50 -0.5
225,203 + +1.8
225,204 - HGI48_RS00990 0.52 -1.6
225,252 + HGI48_RS00990 0.55 -1.8
225,282 - +1.6
225,342 + HGI48_RS00990 0.61 -1.2
225,393 - HGI48_RS00990 0.65 -0.2
225,589 - HGI48_RS00990 0.78 -0.5
225,596 + HGI48_RS00990 0.79 -0.9
225,596 + HGI48_RS00990 0.79 -1.5
225,831 - -0.7
225,831 - -0.6
225,831 - -1.2
225,875 - +0.3
225,875 - -0.5
225,879 - -0.9
225,879 - +0.8
225,900 + -0.2
225,920 + -0.2
225,920 + +0.1
226,458 + -0.0
226,458 + -0.9
226,459 - -0.5
226,549 - +0.1
226,645 + +2.4

Or see this region's nucleotide sequence