Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00610 and HGI48_RS00615 overlap by 8 nucleotides HGI48_RS00615 and HGI48_RS00620 overlap by 19 nucleotides
HGI48_RS00610: HGI48_RS00610 - TolC family protein, at 144,640 to 146,121
_RS00610
HGI48_RS00615: HGI48_RS00615 - HlyD family efflux transporter periplasmic adaptor subunit, at 146,114 to 147,376
_RS00615
HGI48_RS00620: HGI48_RS00620 - isoaspartyl peptidase/L-asparaginase, at 147,358 to 148,326
_RS00620
Position (kb) 146
147
148 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 145.182 kb on + strand, within HGI48_RS00610 at 145.183 kb on - strand, within HGI48_RS00610 at 145.183 kb on - strand, within HGI48_RS00610 at 145.200 kb on + strand, within HGI48_RS00610 at 145.216 kb on - strand, within HGI48_RS00610 at 145.216 kb on - strand, within HGI48_RS00610 at 145.216 kb on - strand, within HGI48_RS00610 at 145.216 kb on - strand, within HGI48_RS00610 at 145.227 kb on - strand, within HGI48_RS00610 at 145.227 kb on - strand, within HGI48_RS00610 at 145.402 kb on + strand, within HGI48_RS00610 at 145.402 kb on + strand, within HGI48_RS00610 at 145.445 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.449 kb on - strand, within HGI48_RS00610 at 145.449 kb on - strand, within HGI48_RS00610 at 145.449 kb on - strand, within HGI48_RS00610 at 145.449 kb on - strand, within HGI48_RS00610 at 145.567 kb on + strand, within HGI48_RS00610 at 145.567 kb on + strand, within HGI48_RS00610 at 145.567 kb on + strand at 145.568 kb on - strand at 145.568 kb on - strand at 145.605 kb on - strand, within HGI48_RS00610 at 145.605 kb on - strand, within HGI48_RS00610 at 145.623 kb on + strand, within HGI48_RS00610 at 145.624 kb on - strand, within HGI48_RS00610 at 145.624 kb on - strand, within HGI48_RS00610 at 145.683 kb on + strand, within HGI48_RS00610 at 145.683 kb on + strand, within HGI48_RS00610 at 145.684 kb on - strand, within HGI48_RS00610 at 145.684 kb on - strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand at 145.859 kb on + strand, within HGI48_RS00610 at 146.044 kb on + strand at 146.044 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.047 kb on - strand at 146.047 kb on - strand at 146.047 kb on - strand at 146.047 kb on - strand at 146.047 kb on - strand at 146.047 kb on - strand at 146.047 kb on - strand at 146.119 kb on + strand at 146.120 kb on - strand at 146.311 kb on + strand, within HGI48_RS00615 at 146.311 kb on + strand, within HGI48_RS00615 at 146.311 kb on + strand, within HGI48_RS00615 at 146.312 kb on - strand, within HGI48_RS00615 at 146.312 kb on - strand, within HGI48_RS00615 at 146.312 kb on - strand at 146.312 kb on - strand, within HGI48_RS00615 at 146.312 kb on - strand, within HGI48_RS00615 at 146.312 kb on - strand, within HGI48_RS00615 at 146.312 kb on - strand, within HGI48_RS00615 at 146.312 kb on - strand, within HGI48_RS00615 at 146.358 kb on + strand, within HGI48_RS00615 at 146.358 kb on + strand at 146.359 kb on - strand at 146.359 kb on - strand, within HGI48_RS00615 at 146.359 kb on - strand, within HGI48_RS00615 at 146.398 kb on + strand, within HGI48_RS00615 at 146.398 kb on + strand, within HGI48_RS00615 at 146.399 kb on - strand, within HGI48_RS00615 at 146.455 kb on + strand, within HGI48_RS00615 at 146.455 kb on + strand, within HGI48_RS00615 at 146.455 kb on + strand, within HGI48_RS00615 at 146.456 kb on - strand at 146.456 kb on - strand, within HGI48_RS00615 at 146.456 kb on - strand, within HGI48_RS00615 at 146.456 kb on - strand, within HGI48_RS00615 at 146.460 kb on + strand, within HGI48_RS00615 at 146.498 kb on - strand at 146.498 kb on - strand, within HGI48_RS00615 at 146.508 kb on + strand, within HGI48_RS00615 at 146.509 kb on - strand, within HGI48_RS00615 at 146.571 kb on + strand, within HGI48_RS00615 at 146.571 kb on + strand, within HGI48_RS00615 at 146.572 kb on - strand, within HGI48_RS00615 at 146.572 kb on - strand, within HGI48_RS00615 at 146.572 kb on - strand, within HGI48_RS00615 at 146.628 kb on + strand, within HGI48_RS00615 at 146.628 kb on + strand, within HGI48_RS00615 at 146.628 kb on + strand, within HGI48_RS00615 at 146.628 kb on + strand, within HGI48_RS00615 at 146.692 kb on + strand, within HGI48_RS00615 at 146.693 kb on - strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.822 kb on - strand, within HGI48_RS00615 at 146.893 kb on + strand, within HGI48_RS00615 at 146.893 kb on + strand, within HGI48_RS00615 at 146.894 kb on - strand, within HGI48_RS00615 at 146.980 kb on + strand, within HGI48_RS00615 at 146.980 kb on + strand, within HGI48_RS00615 at 146.981 kb on - strand at 146.981 kb on - strand, within HGI48_RS00615 at 147.043 kb on + strand, within HGI48_RS00615 at 147.043 kb on + strand, within HGI48_RS00615 at 147.044 kb on - strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.248 kb on + strand, within HGI48_RS00615 at 147.248 kb on + strand, within HGI48_RS00615 at 147.248 kb on + strand, within HGI48_RS00615 at 147.248 kb on + strand, within HGI48_RS00615 at 147.249 kb on - strand at 147.249 kb on - strand, within HGI48_RS00615 at 147.249 kb on - strand, within HGI48_RS00615 at 147.249 kb on - strand, within HGI48_RS00615 at 147.249 kb on - strand, within HGI48_RS00615 at 147.353 kb on + strand at 147.354 kb on - strand at 147.354 kb on - strand at 147.363 kb on + strand at 147.364 kb on - strand at 147.404 kb on + strand at 147.405 kb on - strand at 147.405 kb on - strand at 147.419 kb on + strand at 147.419 kb on + strand at 147.419 kb on + strand at 147.419 kb on + strand at 147.420 kb on - strand at 147.420 kb on - strand at 147.451 kb on - strand at 147.579 kb on - strand, within HGI48_RS00620 at 147.592 kb on - strand, within HGI48_RS00620 at 147.592 kb on - strand, within HGI48_RS00620 at 147.651 kb on - strand, within HGI48_RS00620 at 148.074 kb on + strand at 148.122 kb on + strand, within HGI48_RS00620 at 148.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 145,182 + HGI48_RS00610 0.37 +0.4 145,183 - HGI48_RS00610 0.37 +1.5 145,183 - HGI48_RS00610 0.37 -0.5 145,200 + HGI48_RS00610 0.38 -0.1 145,216 - HGI48_RS00610 0.39 -1.1 145,216 - HGI48_RS00610 0.39 -1.9 145,216 - HGI48_RS00610 0.39 +0.4 145,216 - HGI48_RS00610 0.39 +0.1 145,227 - HGI48_RS00610 0.40 +0.2 145,227 - HGI48_RS00610 0.40 +0.2 145,402 + HGI48_RS00610 0.51 +0.6 145,402 + HGI48_RS00610 0.51 -0.6 145,445 + HGI48_RS00610 0.54 -0.7 145,448 + HGI48_RS00610 0.55 +0.6 145,448 + HGI48_RS00610 0.55 -0.1 145,448 + HGI48_RS00610 0.55 -0.5 145,448 + HGI48_RS00610 0.55 -0.3 145,448 + HGI48_RS00610 0.55 -0.0 145,448 + HGI48_RS00610 0.55 -0.1 145,448 + HGI48_RS00610 0.55 -0.4 145,448 + HGI48_RS00610 0.55 +0.1 145,449 - HGI48_RS00610 0.55 +0.1 145,449 - HGI48_RS00610 0.55 +0.1 145,449 - HGI48_RS00610 0.55 -1.3 145,449 - HGI48_RS00610 0.55 -0.7 145,567 + HGI48_RS00610 0.63 -0.1 145,567 + HGI48_RS00610 0.63 -0.1 145,567 + +0.9 145,568 - -0.7 145,568 - +0.3 145,605 - HGI48_RS00610 0.65 -0.1 145,605 - HGI48_RS00610 0.65 +1.4 145,623 + HGI48_RS00610 0.66 -0.8 145,624 - HGI48_RS00610 0.66 +0.3 145,624 - HGI48_RS00610 0.66 +0.0 145,683 + HGI48_RS00610 0.70 +0.6 145,683 + HGI48_RS00610 0.70 -0.1 145,684 - HGI48_RS00610 0.70 +0.1 145,684 - HGI48_RS00610 0.70 -0.7 145,717 + HGI48_RS00610 0.73 +1.7 145,717 + HGI48_RS00610 0.73 +0.1 145,717 + HGI48_RS00610 0.73 -0.1 145,717 + HGI48_RS00610 0.73 -0.1 145,717 + HGI48_RS00610 0.73 -0.0 145,717 + HGI48_RS00610 0.73 +0.6 145,717 + HGI48_RS00610 0.73 +0.2 145,717 + HGI48_RS00610 0.73 +0.3 145,717 + HGI48_RS00610 0.73 +0.3 145,717 + HGI48_RS00610 0.73 +0.2 145,717 + HGI48_RS00610 0.73 -0.3 145,717 + HGI48_RS00610 0.73 -1.5 145,717 + HGI48_RS00610 0.73 +0.3 145,717 + HGI48_RS00610 0.73 -0.0 145,717 + HGI48_RS00610 0.73 -1.9 145,718 - HGI48_RS00610 0.73 -0.3 145,718 - HGI48_RS00610 0.73 -0.4 145,718 - HGI48_RS00610 0.73 +0.9 145,718 - HGI48_RS00610 0.73 +0.4 145,718 - HGI48_RS00610 0.73 +0.6 145,718 - HGI48_RS00610 0.73 -0.7 145,718 - HGI48_RS00610 0.73 +0.9 145,718 - HGI48_RS00610 0.73 +1.1 145,718 - HGI48_RS00610 0.73 -0.5 145,718 - HGI48_RS00610 0.73 +0.1 145,718 - HGI48_RS00610 0.73 -0.1 145,718 - HGI48_RS00610 0.73 -1.5 145,718 - +1.3 145,859 + HGI48_RS00610 0.82 -1.1 146,044 + -1.6 146,044 + -1.6 146,046 + +0.1 146,046 + -0.7 146,046 + +0.6 146,046 + -0.4 146,046 + -0.1 146,046 + -0.1 146,046 + -0.5 146,046 + +0.3 146,046 + +0.2 146,046 + -0.5 146,046 + +0.0 146,046 + +0.2 146,046 + +0.3 146,047 - -0.3 146,047 - -0.3 146,047 - -0.7 146,047 - +1.6 146,047 - -1.5 146,047 - +0.9 146,047 - +0.9 146,119 + +0.9 146,120 - -0.4 146,311 + HGI48_RS00615 0.16 -1.3 146,311 + HGI48_RS00615 0.16 +0.1 146,311 + HGI48_RS00615 0.16 -0.7 146,312 - HGI48_RS00615 0.16 -2.0 146,312 - HGI48_RS00615 0.16 +0.1 146,312 - +2.4 146,312 - HGI48_RS00615 0.16 -1.5 146,312 - HGI48_RS00615 0.16 +0.1 146,312 - HGI48_RS00615 0.16 +0.4 146,312 - HGI48_RS00615 0.16 -1.5 146,312 - HGI48_RS00615 0.16 -1.5 146,358 + HGI48_RS00615 0.19 +0.6 146,358 + +1.6 146,359 - +1.9 146,359 - HGI48_RS00615 0.19 -1.0 146,359 - HGI48_RS00615 0.19 +0.3 146,398 + HGI48_RS00615 0.22 -0.1 146,398 + HGI48_RS00615 0.22 -0.1 146,399 - HGI48_RS00615 0.23 -1.5 146,455 + HGI48_RS00615 0.27 +1.2 146,455 + HGI48_RS00615 0.27 -0.2 146,455 + HGI48_RS00615 0.27 -0.9 146,456 - +0.9 146,456 - HGI48_RS00615 0.27 -0.5 146,456 - HGI48_RS00615 0.27 +0.5 146,456 - HGI48_RS00615 0.27 -0.8 146,460 + HGI48_RS00615 0.27 +0.5 146,498 - +0.3 146,498 - HGI48_RS00615 0.30 -1.1 146,508 + HGI48_RS00615 0.31 -0.8 146,509 - HGI48_RS00615 0.31 +1.4 146,571 + HGI48_RS00615 0.36 -1.9 146,571 + HGI48_RS00615 0.36 +0.1 146,572 - HGI48_RS00615 0.36 -0.9 146,572 - HGI48_RS00615 0.36 -0.6 146,572 - HGI48_RS00615 0.36 -0.9 146,628 + HGI48_RS00615 0.41 +1.3 146,628 + HGI48_RS00615 0.41 +0.1 146,628 + HGI48_RS00615 0.41 -0.2 146,628 + HGI48_RS00615 0.41 -0.4 146,692 + HGI48_RS00615 0.46 +0.4 146,693 - HGI48_RS00615 0.46 -2.8 146,783 + HGI48_RS00615 0.53 -0.3 146,783 + HGI48_RS00615 0.53 +0.2 146,783 + -0.7 146,783 + HGI48_RS00615 0.53 -1.4 146,783 + HGI48_RS00615 0.53 -1.5 146,783 + HGI48_RS00615 0.53 +0.5 146,783 + HGI48_RS00615 0.53 -1.6 146,783 + -0.7 146,783 + HGI48_RS00615 0.53 -1.7 146,783 + HGI48_RS00615 0.53 -0.2 146,783 + HGI48_RS00615 0.53 +0.9 146,783 + HGI48_RS00615 0.53 -1.5 146,784 - HGI48_RS00615 0.53 -1.5 146,784 - HGI48_RS00615 0.53 +0.3 146,784 - HGI48_RS00615 0.53 +0.6 146,784 - HGI48_RS00615 0.53 -1.7 146,784 - HGI48_RS00615 0.53 -1.2 146,784 - HGI48_RS00615 0.53 +0.1 146,784 - HGI48_RS00615 0.53 -1.1 146,784 - HGI48_RS00615 0.53 +0.0 146,784 - HGI48_RS00615 0.53 +0.6 146,784 - HGI48_RS00615 0.53 -0.7 146,822 - HGI48_RS00615 0.56 +0.5 146,893 + HGI48_RS00615 0.62 -0.5 146,893 + HGI48_RS00615 0.62 +0.0 146,894 - HGI48_RS00615 0.62 -0.4 146,980 + HGI48_RS00615 0.69 +0.7 146,980 + HGI48_RS00615 0.69 +0.0 146,981 - -0.1 146,981 - HGI48_RS00615 0.69 -0.4 147,043 + HGI48_RS00615 0.74 +0.1 147,043 + HGI48_RS00615 0.74 +1.0 147,044 - HGI48_RS00615 0.74 -0.1 147,092 + HGI48_RS00615 0.77 +0.4 147,092 + +0.3 147,092 + HGI48_RS00615 0.77 -0.0 147,092 + HGI48_RS00615 0.77 +0.4 147,092 + HGI48_RS00615 0.77 -1.0 147,092 + HGI48_RS00615 0.77 +0.6 147,092 + HGI48_RS00615 0.77 -1.1 147,092 + HGI48_RS00615 0.77 -0.5 147,092 + HGI48_RS00615 0.77 -0.5 147,092 + HGI48_RS00615 0.77 +0.5 147,092 + HGI48_RS00615 0.77 -0.5 147,093 - HGI48_RS00615 0.78 +0.6 147,093 - HGI48_RS00615 0.78 -0.4 147,093 - HGI48_RS00615 0.78 -1.7 147,093 - HGI48_RS00615 0.78 -2.9 147,093 - HGI48_RS00615 0.78 -0.6 147,093 - HGI48_RS00615 0.78 +0.0 147,093 - HGI48_RS00615 0.78 -0.1 147,248 + HGI48_RS00615 0.90 -0.2 147,248 + HGI48_RS00615 0.90 -2.5 147,248 + HGI48_RS00615 0.90 +0.5 147,248 + HGI48_RS00615 0.90 -0.6 147,249 - -0.7 147,249 - HGI48_RS00615 0.90 +0.7 147,249 - HGI48_RS00615 0.90 +0.2 147,249 - HGI48_RS00615 0.90 +0.3 147,249 - HGI48_RS00615 0.90 -0.4 147,353 + -0.1 147,354 - -0.1 147,354 - +0.9 147,363 + -1.5 147,364 - +0.4 147,404 + +1.2 147,405 - +0.1 147,405 - +0.3 147,419 + -0.6 147,419 + +0.5 147,419 + +0.5 147,419 + +0.1 147,420 - +1.3 147,420 - +0.3 147,451 - +1.7 147,579 - HGI48_RS00620 0.23 -0.4 147,592 - HGI48_RS00620 0.24 +0.6 147,592 - HGI48_RS00620 0.24 +0.5 147,651 - HGI48_RS00620 0.30 +0.5 148,074 + -0.1 148,122 + HGI48_RS00620 0.79 +0.3 148,360 + -0.1
Or see this region's nucleotide sequence