Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00595 and HGI48_RS00600 are separated by 90 nucleotides HGI48_RS00600 and HGI48_RS00605 overlap by 8 nucleotides HGI48_RS00605 and HGI48_RS00610 overlap by 8 nucleotides
HGI48_RS00595: HGI48_RS00595 - hypothetical protein, at 141,866 to 142,630
_RS00595
HGI48_RS00600: HGI48_RS00600 - ABC transporter ATP-binding protein, at 142,721 to 143,434
_RS00600
HGI48_RS00605: HGI48_RS00605 - ABC transporter permease, at 143,427 to 144,647
_RS00605
HGI48_RS00610: HGI48_RS00610 - TolC family protein, at 144,640 to 146,121
_RS00610
Position (kb) 143
144
145 Strain fitness (log2 ratio) -2
-1
0
1
2 at 142.427 kb on - strand, within HGI48_RS00595 at 142.427 kb on - strand, within HGI48_RS00595 at 142.427 kb on - strand, within HGI48_RS00595 at 142.430 kb on + strand, within HGI48_RS00595 at 142.430 kb on + strand, within HGI48_RS00595 at 142.430 kb on + strand, within HGI48_RS00595 at 142.431 kb on - strand, within HGI48_RS00595 at 142.431 kb on - strand, within HGI48_RS00595 at 142.452 kb on - strand, within HGI48_RS00595 at 142.496 kb on + strand, within HGI48_RS00595 at 142.674 kb on + strand at 142.674 kb on + strand at 142.674 kb on + strand at 142.674 kb on + strand at 142.674 kb on + strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.678 kb on + strand at 142.678 kb on + strand at 142.678 kb on + strand at 142.678 kb on + strand at 142.679 kb on - strand at 142.679 kb on - strand at 142.679 kb on - strand at 142.689 kb on + strand at 142.690 kb on - strand at 142.755 kb on + strand at 142.756 kb on - strand at 142.756 kb on - strand at 142.803 kb on + strand, within HGI48_RS00600 at 142.815 kb on + strand, within HGI48_RS00600 at 142.844 kb on - strand, within HGI48_RS00600 at 142.891 kb on + strand, within HGI48_RS00600 at 143.085 kb on - strand, within HGI48_RS00600 at 143.092 kb on + strand at 143.092 kb on + strand, within HGI48_RS00600 at 143.093 kb on - strand at 143.296 kb on + strand, within HGI48_RS00600 at 143.297 kb on - strand, within HGI48_RS00600 at 143.336 kb on - strand, within HGI48_RS00600 at 143.344 kb on - strand, within HGI48_RS00600 at 143.377 kb on + strand at 143.377 kb on + strand at 143.377 kb on + strand at 143.377 kb on + strand at 143.378 kb on - strand at 143.413 kb on - strand at 143.413 kb on - strand at 143.533 kb on + strand at 143.533 kb on + strand at 143.534 kb on - strand at 143.534 kb on - strand at 143.534 kb on - strand at 143.534 kb on - strand at 143.534 kb on - strand at 143.537 kb on + strand at 143.537 kb on + strand at 143.537 kb on + strand at 143.537 kb on + strand at 143.537 kb on + strand at 143.538 kb on - strand at 143.538 kb on - strand at 143.611 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.622 kb on - strand, within HGI48_RS00605 at 143.779 kb on + strand, within HGI48_RS00605 at 143.779 kb on + strand, within HGI48_RS00605 at 143.780 kb on - strand, within HGI48_RS00605 at 143.780 kb on - strand, within HGI48_RS00605 at 143.798 kb on + strand at 143.799 kb on - strand, within HGI48_RS00605 at 143.816 kb on + strand, within HGI48_RS00605 at 143.845 kb on + strand, within HGI48_RS00605 at 143.845 kb on + strand, within HGI48_RS00605 at 143.846 kb on - strand, within HGI48_RS00605 at 143.846 kb on - strand, within HGI48_RS00605 at 143.851 kb on + strand, within HGI48_RS00605 at 143.852 kb on - strand, within HGI48_RS00605 at 143.878 kb on - strand, within HGI48_RS00605 at 143.878 kb on - strand at 143.878 kb on - strand, within HGI48_RS00605 at 143.878 kb on - strand at 143.878 kb on - strand, within HGI48_RS00605 at 144.107 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.176 kb on - strand, within HGI48_RS00605 at 144.176 kb on - strand, within HGI48_RS00605 at 144.176 kb on - strand, within HGI48_RS00605 at 144.176 kb on - strand, within HGI48_RS00605 at 144.292 kb on + strand, within HGI48_RS00605 at 144.293 kb on - strand, within HGI48_RS00605 at 144.293 kb on - strand, within HGI48_RS00605 at 144.293 kb on - strand, within HGI48_RS00605 at 144.293 kb on - strand, within HGI48_RS00605 at 144.371 kb on - strand, within HGI48_RS00605 at 144.371 kb on - strand, within HGI48_RS00605 at 144.371 kb on - strand, within HGI48_RS00605 at 144.476 kb on - strand, within HGI48_RS00605 at 144.635 kb on - strand at 144.635 kb on - strand at 144.645 kb on + strand at 144.645 kb on + strand at 144.646 kb on - strand at 144.646 kb on - strand at 144.646 kb on - strand at 144.646 kb on - strand at 144.668 kb on + strand at 144.669 kb on - strand at 144.669 kb on - strand at 144.767 kb on + strand at 144.768 kb on - strand at 144.810 kb on + strand, within HGI48_RS00610 at 144.810 kb on + strand, within HGI48_RS00610 at 144.810 kb on + strand, within HGI48_RS00610 at 144.810 kb on + strand, within HGI48_RS00610 at 144.811 kb on - strand, within HGI48_RS00610 at 144.811 kb on - strand, within HGI48_RS00610 at 144.811 kb on - strand, within HGI48_RS00610 at 144.811 kb on - strand, within HGI48_RS00610 at 144.811 kb on - strand, within HGI48_RS00610 at 144.814 kb on + strand, within HGI48_RS00610 at 144.814 kb on + strand, within HGI48_RS00610 at 144.814 kb on + strand, within HGI48_RS00610 at 144.814 kb on + strand, within HGI48_RS00610 at 144.814 kb on + strand, within HGI48_RS00610 at 144.815 kb on - strand, within HGI48_RS00610 at 144.815 kb on - strand, within HGI48_RS00610 at 144.815 kb on - strand, within HGI48_RS00610 at 144.854 kb on - strand, within HGI48_RS00610 at 144.906 kb on + strand, within HGI48_RS00610 at 144.906 kb on + strand, within HGI48_RS00610 at 144.906 kb on + strand, within HGI48_RS00610 at 144.906 kb on + strand, within HGI48_RS00610 at 144.906 kb on + strand, within HGI48_RS00610 at 144.907 kb on - strand, within HGI48_RS00610 at 144.907 kb on - strand, within HGI48_RS00610 at 144.912 kb on + strand at 144.912 kb on + strand, within HGI48_RS00610 at 144.912 kb on + strand, within HGI48_RS00610 at 144.912 kb on + strand, within HGI48_RS00610 at 144.912 kb on + strand at 144.912 kb on + strand, within HGI48_RS00610 at 144.913 kb on - strand, within HGI48_RS00610 at 144.913 kb on - strand, within HGI48_RS00610 at 144.913 kb on - strand, within HGI48_RS00610 at 144.913 kb on - strand, within HGI48_RS00610 at 144.913 kb on - strand, within HGI48_RS00610 at 144.935 kb on - strand, within HGI48_RS00610 at 144.935 kb on - strand, within HGI48_RS00610 at 144.975 kb on + strand, within HGI48_RS00610 at 145.014 kb on + strand, within HGI48_RS00610 at 145.015 kb on - strand at 145.039 kb on + strand, within HGI48_RS00610 at 145.040 kb on - strand, within HGI48_RS00610 at 145.047 kb on + strand, within HGI48_RS00610 at 145.047 kb on + strand at 145.047 kb on + strand, within HGI48_RS00610 at 145.047 kb on + strand, within HGI48_RS00610 at 145.048 kb on - strand, within HGI48_RS00610 at 145.048 kb on - strand, within HGI48_RS00610 at 145.048 kb on - strand, within HGI48_RS00610 at 145.048 kb on - strand, within HGI48_RS00610 at 145.048 kb on - strand, within HGI48_RS00610 at 145.182 kb on + strand, within HGI48_RS00610 at 145.183 kb on - strand, within HGI48_RS00610 at 145.183 kb on - strand, within HGI48_RS00610 at 145.200 kb on + strand, within HGI48_RS00610 at 145.216 kb on - strand, within HGI48_RS00610 at 145.216 kb on - strand, within HGI48_RS00610 at 145.216 kb on - strand, within HGI48_RS00610 at 145.216 kb on - strand, within HGI48_RS00610 at 145.227 kb on - strand, within HGI48_RS00610 at 145.227 kb on - strand, within HGI48_RS00610 at 145.402 kb on + strand, within HGI48_RS00610 at 145.402 kb on + strand, within HGI48_RS00610 at 145.445 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.449 kb on - strand, within HGI48_RS00610 at 145.449 kb on - strand, within HGI48_RS00610 at 145.449 kb on - strand, within HGI48_RS00610 at 145.449 kb on - strand, within HGI48_RS00610 at 145.567 kb on + strand, within HGI48_RS00610 at 145.567 kb on + strand, within HGI48_RS00610 at 145.567 kb on + strand at 145.568 kb on - strand at 145.568 kb on - strand at 145.605 kb on - strand, within HGI48_RS00610 at 145.605 kb on - strand, within HGI48_RS00610 at 145.623 kb on + strand, within HGI48_RS00610 at 145.624 kb on - strand, within HGI48_RS00610 at 145.624 kb on - strand, within HGI48_RS00610
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 142,427 - HGI48_RS00595 0.73 +1.4 142,427 - HGI48_RS00595 0.73 -0.1 142,427 - HGI48_RS00595 0.73 -0.1 142,430 + HGI48_RS00595 0.74 +0.2 142,430 + HGI48_RS00595 0.74 +0.4 142,430 + HGI48_RS00595 0.74 -0.6 142,431 - HGI48_RS00595 0.74 -0.9 142,431 - HGI48_RS00595 0.74 -1.3 142,452 - HGI48_RS00595 0.77 -2.3 142,496 + HGI48_RS00595 0.82 -0.5 142,674 + +1.3 142,674 + +0.4 142,674 + -0.1 142,674 + -0.7 142,674 + +0.5 142,675 - +1.3 142,675 - +0.3 142,675 - +1.0 142,675 - -1.3 142,675 - +1.1 142,675 - -0.7 142,678 + -0.5 142,678 + -0.5 142,678 + +0.4 142,678 + -0.1 142,679 - -0.7 142,679 - -0.1 142,679 - -1.7 142,689 + -1.9 142,690 - -0.7 142,755 + -1.5 142,756 - +0.1 142,756 - -1.7 142,803 + HGI48_RS00600 0.11 +0.1 142,815 + HGI48_RS00600 0.13 +0.1 142,844 - HGI48_RS00600 0.17 -0.8 142,891 + HGI48_RS00600 0.24 -1.7 143,085 - HGI48_RS00600 0.51 -0.1 143,092 + +1.9 143,092 + HGI48_RS00600 0.52 -0.1 143,093 - +1.3 143,296 + HGI48_RS00600 0.81 -1.5 143,297 - HGI48_RS00600 0.81 +0.5 143,336 - HGI48_RS00600 0.86 -0.3 143,344 - HGI48_RS00600 0.87 -0.2 143,377 + +0.9 143,377 + -0.6 143,377 + -1.0 143,377 + +0.3 143,378 - +0.3 143,413 - +0.9 143,413 - -1.1 143,533 + -0.2 143,533 + +0.6 143,534 - +0.7 143,534 - -1.9 143,534 - -0.5 143,534 - +0.3 143,534 - -1.3 143,537 + +1.2 143,537 + -1.1 143,537 + +0.0 143,537 + +2.2 143,537 + -0.9 143,538 - +1.4 143,538 - +1.0 143,611 + HGI48_RS00605 0.15 +0.9 143,621 + HGI48_RS00605 0.16 -0.9 143,621 + HGI48_RS00605 0.16 +0.8 143,621 + HGI48_RS00605 0.16 +0.6 143,621 + HGI48_RS00605 0.16 +0.4 143,621 + HGI48_RS00605 0.16 -0.7 143,621 + HGI48_RS00605 0.16 -0.8 143,622 - HGI48_RS00605 0.16 -1.1 143,779 + HGI48_RS00605 0.29 -0.1 143,779 + HGI48_RS00605 0.29 +0.2 143,780 - HGI48_RS00605 0.29 +0.9 143,780 - HGI48_RS00605 0.29 +0.0 143,798 + +0.3 143,799 - HGI48_RS00605 0.30 +1.4 143,816 + HGI48_RS00605 0.32 -1.7 143,845 + HGI48_RS00605 0.34 +0.3 143,845 + HGI48_RS00605 0.34 -1.7 143,846 - HGI48_RS00605 0.34 -2.1 143,846 - HGI48_RS00605 0.34 -1.5 143,851 + HGI48_RS00605 0.35 -1.4 143,852 - HGI48_RS00605 0.35 -0.9 143,878 - HGI48_RS00605 0.37 -0.2 143,878 - +0.9 143,878 - HGI48_RS00605 0.37 -2.5 143,878 - +0.3 143,878 - HGI48_RS00605 0.37 -0.1 144,107 + HGI48_RS00605 0.56 -0.5 144,115 + HGI48_RS00605 0.56 -0.4 144,115 + HGI48_RS00605 0.56 -0.5 144,115 + HGI48_RS00605 0.56 +1.1 144,115 + HGI48_RS00605 0.56 -0.9 144,115 + HGI48_RS00605 0.56 -0.5 144,115 + HGI48_RS00605 0.56 +1.4 144,176 - HGI48_RS00605 0.61 -1.0 144,176 - HGI48_RS00605 0.61 -0.7 144,176 - HGI48_RS00605 0.61 -1.9 144,176 - HGI48_RS00605 0.61 -0.8 144,292 + HGI48_RS00605 0.71 -0.3 144,293 - HGI48_RS00605 0.71 +0.0 144,293 - HGI48_RS00605 0.71 +1.2 144,293 - HGI48_RS00605 0.71 +1.4 144,293 - HGI48_RS00605 0.71 +0.6 144,371 - HGI48_RS00605 0.77 -0.2 144,371 - HGI48_RS00605 0.77 -1.9 144,371 - HGI48_RS00605 0.77 +0.0 144,476 - HGI48_RS00605 0.86 -0.6 144,635 - -0.7 144,635 - -0.5 144,645 + -2.3 144,645 + +0.9 144,646 - +0.9 144,646 - +1.1 144,646 - -1.1 144,646 - -0.6 144,668 + +0.1 144,669 - +0.7 144,669 - -0.8 144,767 + -0.7 144,768 - +2.2 144,810 + HGI48_RS00610 0.11 -0.8 144,810 + HGI48_RS00610 0.11 -0.1 144,810 + HGI48_RS00610 0.11 +0.3 144,810 + HGI48_RS00610 0.11 -0.7 144,811 - HGI48_RS00610 0.12 -1.5 144,811 - HGI48_RS00610 0.12 +0.0 144,811 - HGI48_RS00610 0.12 -0.4 144,811 - HGI48_RS00610 0.12 +0.9 144,811 - HGI48_RS00610 0.12 -2.1 144,814 + HGI48_RS00610 0.12 +0.7 144,814 + HGI48_RS00610 0.12 -0.1 144,814 + HGI48_RS00610 0.12 +0.1 144,814 + HGI48_RS00610 0.12 -0.3 144,814 + HGI48_RS00610 0.12 +0.6 144,815 - HGI48_RS00610 0.12 -1.1 144,815 - HGI48_RS00610 0.12 -0.3 144,815 - HGI48_RS00610 0.12 +1.4 144,854 - HGI48_RS00610 0.14 +1.0 144,906 + HGI48_RS00610 0.18 +0.6 144,906 + HGI48_RS00610 0.18 -0.7 144,906 + HGI48_RS00610 0.18 +0.7 144,906 + HGI48_RS00610 0.18 +0.0 144,906 + HGI48_RS00610 0.18 +0.1 144,907 - HGI48_RS00610 0.18 -0.7 144,907 - HGI48_RS00610 0.18 -1.5 144,912 + +0.3 144,912 + HGI48_RS00610 0.18 +0.9 144,912 + HGI48_RS00610 0.18 -0.1 144,912 + HGI48_RS00610 0.18 -0.1 144,912 + -0.1 144,912 + HGI48_RS00610 0.18 +0.5 144,913 - HGI48_RS00610 0.18 -0.3 144,913 - HGI48_RS00610 0.18 -1.7 144,913 - HGI48_RS00610 0.18 +0.9 144,913 - HGI48_RS00610 0.18 +0.9 144,913 - HGI48_RS00610 0.18 -1.6 144,935 - HGI48_RS00610 0.20 +0.4 144,935 - HGI48_RS00610 0.20 -0.3 144,975 + HGI48_RS00610 0.23 -0.1 145,014 + HGI48_RS00610 0.25 -1.3 145,015 - +0.3 145,039 + HGI48_RS00610 0.27 -1.8 145,040 - HGI48_RS00610 0.27 -0.9 145,047 + HGI48_RS00610 0.27 +0.9 145,047 + -0.1 145,047 + HGI48_RS00610 0.27 -0.6 145,047 + HGI48_RS00610 0.27 -0.2 145,048 - HGI48_RS00610 0.28 +0.6 145,048 - HGI48_RS00610 0.28 +1.4 145,048 - HGI48_RS00610 0.28 -1.1 145,048 - HGI48_RS00610 0.28 -0.4 145,048 - HGI48_RS00610 0.28 -1.1 145,182 + HGI48_RS00610 0.37 +0.4 145,183 - HGI48_RS00610 0.37 +1.5 145,183 - HGI48_RS00610 0.37 -0.5 145,200 + HGI48_RS00610 0.38 -0.1 145,216 - HGI48_RS00610 0.39 -1.1 145,216 - HGI48_RS00610 0.39 -1.9 145,216 - HGI48_RS00610 0.39 +0.4 145,216 - HGI48_RS00610 0.39 +0.1 145,227 - HGI48_RS00610 0.40 +0.2 145,227 - HGI48_RS00610 0.40 +0.2 145,402 + HGI48_RS00610 0.51 +0.6 145,402 + HGI48_RS00610 0.51 -0.6 145,445 + HGI48_RS00610 0.54 -0.7 145,448 + HGI48_RS00610 0.55 +0.6 145,448 + HGI48_RS00610 0.55 -0.1 145,448 + HGI48_RS00610 0.55 -0.5 145,448 + HGI48_RS00610 0.55 -0.3 145,448 + HGI48_RS00610 0.55 -0.0 145,448 + HGI48_RS00610 0.55 -0.1 145,448 + HGI48_RS00610 0.55 -0.4 145,448 + HGI48_RS00610 0.55 +0.1 145,449 - HGI48_RS00610 0.55 +0.1 145,449 - HGI48_RS00610 0.55 +0.1 145,449 - HGI48_RS00610 0.55 -1.3 145,449 - HGI48_RS00610 0.55 -0.7 145,567 + HGI48_RS00610 0.63 -0.1 145,567 + HGI48_RS00610 0.63 -0.1 145,567 + +0.9 145,568 - -0.7 145,568 - +0.3 145,605 - HGI48_RS00610 0.65 -0.1 145,605 - HGI48_RS00610 0.65 +1.4 145,623 + HGI48_RS00610 0.66 -0.8 145,624 - HGI48_RS00610 0.66 +0.3 145,624 - HGI48_RS00610 0.66 +0.0
Or see this region's nucleotide sequence