Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00560 and HGI48_RS00565 overlap by 4 nucleotides HGI48_RS00565 and HGI48_RS00570 are separated by 0 nucleotides HGI48_RS00570 and HGI48_RS00575 overlap by 4 nucleotides HGI48_RS00575 and HGI48_RS00580 overlap by 4 nucleotides
HGI48_RS00560: HGI48_RS00560 - ABC transporter permease, at 134,313 to 135,323
_RS00560
HGI48_RS00565: HGI48_RS00565 - ABC transporter permease, at 135,320 to 136,222
_RS00565
HGI48_RS00570: HGI48_RS00570 - ABC transporter ATP-binding protein, at 136,223 to 137,053
_RS00570
HGI48_RS00575: HGI48_RS00575 - ABC transporter ATP-binding protein, at 137,050 to 137,790
_RS00575
HGI48_RS00580: HGI48_RS00580 - beta-lactamase family protein, at 137,787 to 139,298
_RS00580
Position (kb) 136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 135.239 kb on + strand at 135.261 kb on + strand at 135.261 kb on + strand at 135.261 kb on + strand at 135.261 kb on + strand at 135.262 kb on - strand at 135.262 kb on - strand at 135.294 kb on + strand at 135.295 kb on - strand at 135.317 kb on - strand at 135.317 kb on - strand at 135.329 kb on + strand at 135.329 kb on + strand at 135.329 kb on + strand at 135.329 kb on + strand at 135.329 kb on + strand at 135.329 kb on + strand at 135.329 kb on + strand at 135.330 kb on - strand at 135.330 kb on - strand at 135.330 kb on - strand at 135.330 kb on - strand at 135.330 kb on - strand at 135.609 kb on - strand, within HGI48_RS00565 at 135.619 kb on + strand, within HGI48_RS00565 at 135.619 kb on + strand, within HGI48_RS00565 at 135.620 kb on - strand, within HGI48_RS00565 at 135.620 kb on - strand, within HGI48_RS00565 at 135.620 kb on - strand, within HGI48_RS00565 at 135.622 kb on + strand, within HGI48_RS00565 at 135.623 kb on - strand, within HGI48_RS00565 at 135.623 kb on - strand, within HGI48_RS00565 at 135.623 kb on - strand, within HGI48_RS00565 at 135.715 kb on + strand at 135.848 kb on + strand, within HGI48_RS00565 at 135.898 kb on + strand, within HGI48_RS00565 at 136.157 kb on - strand at 136.157 kb on - strand at 136.220 kb on + strand at 136.220 kb on + strand at 136.220 kb on + strand at 136.221 kb on - strand at 136.221 kb on - strand at 136.221 kb on - strand at 136.221 kb on - strand at 136.514 kb on + strand, within HGI48_RS00570 at 136.629 kb on + strand, within HGI48_RS00570 at 136.630 kb on - strand, within HGI48_RS00570 at 136.630 kb on - strand, within HGI48_RS00570 at 136.898 kb on + strand, within HGI48_RS00570 at 136.898 kb on + strand, within HGI48_RS00570 at 136.898 kb on + strand, within HGI48_RS00570 at 136.899 kb on - strand, within HGI48_RS00570 at 136.899 kb on - strand, within HGI48_RS00570 at 136.899 kb on - strand, within HGI48_RS00570 at 136.899 kb on - strand, within HGI48_RS00570 at 136.899 kb on - strand, within HGI48_RS00570 at 136.942 kb on - strand, within HGI48_RS00570 at 136.958 kb on + strand at 137.008 kb on + strand at 137.009 kb on - strand at 137.176 kb on - strand, within HGI48_RS00575 at 137.203 kb on - strand, within HGI48_RS00575 at 137.203 kb on - strand, within HGI48_RS00575 at 137.337 kb on + strand at 137.337 kb on + strand, within HGI48_RS00575 at 137.337 kb on + strand, within HGI48_RS00575 at 137.338 kb on - strand, within HGI48_RS00575 at 137.513 kb on + strand, within HGI48_RS00575 at 137.513 kb on + strand, within HGI48_RS00575 at 137.513 kb on + strand, within HGI48_RS00575 at 137.513 kb on + strand, within HGI48_RS00575 at 137.513 kb on + strand at 137.514 kb on - strand, within HGI48_RS00575 at 137.514 kb on - strand, within HGI48_RS00575 at 137.514 kb on - strand, within HGI48_RS00575 at 137.514 kb on - strand, within HGI48_RS00575 at 137.514 kb on - strand at 137.601 kb on + strand, within HGI48_RS00575 at 137.602 kb on - strand, within HGI48_RS00575 at 137.602 kb on - strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.612 kb on - strand at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.613 kb on + strand, within HGI48_RS00575 at 137.613 kb on + strand, within HGI48_RS00575 at 137.613 kb on + strand, within HGI48_RS00575 at 137.613 kb on + strand, within HGI48_RS00575 at 137.613 kb on + strand, within HGI48_RS00575 at 137.614 kb on - strand, within HGI48_RS00575 at 137.614 kb on - strand, within HGI48_RS00575 at 137.614 kb on - strand, within HGI48_RS00575 at 137.614 kb on - strand, within HGI48_RS00575 at 137.614 kb on - strand at 137.614 kb on - strand, within HGI48_RS00575 at 137.616 kb on + strand, within HGI48_RS00575 at 137.617 kb on - strand at 137.617 kb on - strand, within HGI48_RS00575 at 137.617 kb on - strand, within HGI48_RS00575 at 137.617 kb on - strand, within HGI48_RS00575 at 137.617 kb on - strand, within HGI48_RS00575 at 137.617 kb on - strand, within HGI48_RS00575 at 137.628 kb on + strand, within HGI48_RS00575 at 137.756 kb on - strand at 137.762 kb on + strand at 137.762 kb on + strand at 137.762 kb on + strand at 137.762 kb on + strand at 137.763 kb on - strand at 137.763 kb on - strand at 137.763 kb on - strand at 137.763 kb on - strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 138.032 kb on + strand, within HGI48_RS00580 at 138.032 kb on + strand, within HGI48_RS00580 at 138.033 kb on - strand, within HGI48_RS00580 at 138.033 kb on - strand, within HGI48_RS00580
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 135,239 + -0.1 135,261 + -0.9 135,261 + -0.0 135,261 + +0.2 135,261 + +1.1 135,262 - -0.6 135,262 - +0.6 135,294 + -0.9 135,295 - -0.4 135,317 - -0.9 135,317 - -1.1 135,329 + +1.3 135,329 + -0.9 135,329 + -0.3 135,329 + -0.6 135,329 + +0.7 135,329 + -2.9 135,329 + -0.9 135,330 - +0.3 135,330 - -0.0 135,330 - +1.2 135,330 - +0.2 135,330 - +1.9 135,609 - HGI48_RS00565 0.32 +0.1 135,619 + HGI48_RS00565 0.33 -1.5 135,619 + HGI48_RS00565 0.33 -0.9 135,620 - HGI48_RS00565 0.33 +0.4 135,620 - HGI48_RS00565 0.33 -1.8 135,620 - HGI48_RS00565 0.33 -1.9 135,622 + HGI48_RS00565 0.33 -1.6 135,623 - HGI48_RS00565 0.34 +0.9 135,623 - HGI48_RS00565 0.34 -0.4 135,623 - HGI48_RS00565 0.34 -1.1 135,715 + +0.9 135,848 + HGI48_RS00565 0.58 +0.7 135,898 + HGI48_RS00565 0.64 +1.1 136,157 - -0.9 136,157 - +0.2 136,220 + +1.6 136,220 + -0.2 136,220 + -0.7 136,221 - -1.1 136,221 - -1.5 136,221 - +0.2 136,221 - -0.5 136,514 + HGI48_RS00570 0.35 -0.1 136,629 + HGI48_RS00570 0.49 +0.4 136,630 - HGI48_RS00570 0.49 +0.1 136,630 - HGI48_RS00570 0.49 -0.1 136,898 + HGI48_RS00570 0.81 -0.6 136,898 + HGI48_RS00570 0.81 -0.0 136,898 + HGI48_RS00570 0.81 -1.1 136,899 - HGI48_RS00570 0.81 -0.7 136,899 - HGI48_RS00570 0.81 +0.1 136,899 - HGI48_RS00570 0.81 +0.1 136,899 - HGI48_RS00570 0.81 -0.4 136,899 - HGI48_RS00570 0.81 -1.3 136,942 - HGI48_RS00570 0.87 -0.8 136,958 + +2.9 137,008 + -0.7 137,009 - -0.1 137,176 - HGI48_RS00575 0.17 -0.5 137,203 - HGI48_RS00575 0.21 +1.1 137,203 - HGI48_RS00575 0.21 +0.9 137,337 + +0.3 137,337 + HGI48_RS00575 0.39 +0.2 137,337 + HGI48_RS00575 0.39 -1.5 137,338 - HGI48_RS00575 0.39 -1.2 137,513 + HGI48_RS00575 0.62 +0.0 137,513 + HGI48_RS00575 0.62 +0.1 137,513 + HGI48_RS00575 0.62 +0.6 137,513 + HGI48_RS00575 0.62 -0.7 137,513 + +1.9 137,514 - HGI48_RS00575 0.63 +0.3 137,514 - HGI48_RS00575 0.63 -0.8 137,514 - HGI48_RS00575 0.63 +0.1 137,514 - HGI48_RS00575 0.63 +0.3 137,514 - +0.9 137,601 + HGI48_RS00575 0.74 -0.5 137,602 - HGI48_RS00575 0.74 -0.4 137,602 - HGI48_RS00575 0.74 +0.3 137,611 + HGI48_RS00575 0.76 -0.4 137,611 + HGI48_RS00575 0.76 -1.5 137,611 + HGI48_RS00575 0.76 -0.3 137,611 + -0.1 137,611 + HGI48_RS00575 0.76 -1.1 137,611 + HGI48_RS00575 0.76 -1.5 137,611 + HGI48_RS00575 0.76 -1.9 137,611 + HGI48_RS00575 0.76 +0.1 137,611 + +2.4 137,611 + HGI48_RS00575 0.76 -0.1 137,611 + HGI48_RS00575 0.76 +0.5 137,611 + HGI48_RS00575 0.76 +0.3 137,611 + HGI48_RS00575 0.76 -1.3 137,611 + HGI48_RS00575 0.76 -1.0 137,611 + HGI48_RS00575 0.76 +0.1 137,611 + HGI48_RS00575 0.76 +0.3 137,611 + HGI48_RS00575 0.76 +0.9 137,612 - +0.3 137,612 - HGI48_RS00575 0.76 -1.3 137,612 - HGI48_RS00575 0.76 +1.2 137,612 - HGI48_RS00575 0.76 +0.4 137,612 - +1.3 137,612 - HGI48_RS00575 0.76 -2.7 137,612 - HGI48_RS00575 0.76 +1.9 137,612 - HGI48_RS00575 0.76 +0.6 137,612 - HGI48_RS00575 0.76 +1.5 137,612 - HGI48_RS00575 0.76 +0.1 137,612 - HGI48_RS00575 0.76 +1.3 137,612 - HGI48_RS00575 0.76 -0.7 137,612 - HGI48_RS00575 0.76 -0.6 137,612 - HGI48_RS00575 0.76 -0.3 137,612 - HGI48_RS00575 0.76 -0.4 137,612 - HGI48_RS00575 0.76 -2.5 137,612 - -0.1 137,612 - HGI48_RS00575 0.76 -0.1 137,612 - HGI48_RS00575 0.76 +0.4 137,613 + HGI48_RS00575 0.76 -0.1 137,613 + HGI48_RS00575 0.76 -0.6 137,613 + HGI48_RS00575 0.76 -0.7 137,613 + HGI48_RS00575 0.76 +0.3 137,613 + HGI48_RS00575 0.76 +0.4 137,614 - HGI48_RS00575 0.76 -0.3 137,614 - HGI48_RS00575 0.76 -1.9 137,614 - HGI48_RS00575 0.76 +0.1 137,614 - HGI48_RS00575 0.76 +0.5 137,614 - -0.7 137,614 - HGI48_RS00575 0.76 +0.9 137,616 + HGI48_RS00575 0.76 -0.4 137,617 - +1.9 137,617 - HGI48_RS00575 0.77 +0.3 137,617 - HGI48_RS00575 0.77 +0.7 137,617 - HGI48_RS00575 0.77 -1.1 137,617 - HGI48_RS00575 0.77 -1.7 137,617 - HGI48_RS00575 0.77 -0.1 137,628 + HGI48_RS00575 0.78 -0.0 137,756 - +1.2 137,762 + -1.1 137,762 + -0.1 137,762 + +1.7 137,762 + +1.6 137,763 - +0.5 137,763 - +1.4 137,763 - -1.1 137,763 - +0.9 137,794 + -0.7 137,794 + +0.4 137,794 + +0.9 137,794 + -1.5 137,794 + -0.7 137,794 + -0.6 137,794 + +0.2 137,794 + +0.5 137,794 + +0.4 137,794 + +1.0 137,794 + -1.3 137,794 + +0.3 137,795 - +0.4 137,795 - -1.1 137,795 - -0.5 137,795 - -1.3 137,795 - -1.7 137,795 - +1.6 137,795 - -0.1 137,795 - +1.3 137,795 - -2.3 137,795 - -0.5 137,795 - +0.3 137,795 - +0.3 138,032 + HGI48_RS00580 0.16 -0.9 138,032 + HGI48_RS00580 0.16 +0.7 138,033 - HGI48_RS00580 0.16 -1.9 138,033 - HGI48_RS00580 0.16 -0.5
Or see this region's nucleotide sequence