Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00550 and HGI48_RS00555 are separated by 200 nucleotides HGI48_RS00555 and HGI48_RS00560 overlap by 1 nucleotides
HGI48_RS00550: HGI48_RS00550 - dipeptidase, at 131,435 to 132,517
_RS00550
HGI48_RS00555: HGI48_RS00555 - ABC transporter substrate-binding protein, at 132,718 to 134,313
_RS00555
HGI48_RS00560: HGI48_RS00560 - ABC transporter permease, at 134,313 to 135,323
_RS00560
Position (kb) 132
133
134
135 Strain fitness (log2 ratio) -1
0
1
2 at 131.999 kb on - strand, within HGI48_RS00550 at 132.046 kb on - strand, within HGI48_RS00550 at 132.046 kb on - strand, within HGI48_RS00550 at 132.053 kb on - strand, within HGI48_RS00550 at 132.312 kb on + strand, within HGI48_RS00550 at 132.312 kb on + strand, within HGI48_RS00550 at 132.312 kb on + strand, within HGI48_RS00550 at 132.527 kb on - strand at 132.540 kb on - strand at 132.633 kb on - strand at 132.783 kb on + strand at 132.840 kb on + strand at 132.840 kb on + strand at 132.840 kb on + strand at 132.841 kb on - strand at 132.907 kb on + strand at 133.134 kb on + strand, within HGI48_RS00555 at 133.161 kb on + strand, within HGI48_RS00555 at 133.190 kb on + strand, within HGI48_RS00555 at 133.191 kb on - strand, within HGI48_RS00555 at 133.191 kb on - strand, within HGI48_RS00555 at 133.228 kb on + strand, within HGI48_RS00555 at 133.229 kb on - strand, within HGI48_RS00555 at 133.356 kb on - strand, within HGI48_RS00555 at 133.423 kb on - strand, within HGI48_RS00555 at 133.549 kb on + strand, within HGI48_RS00555 at 133.549 kb on + strand, within HGI48_RS00555 at 133.549 kb on + strand, within HGI48_RS00555 at 133.549 kb on + strand, within HGI48_RS00555 at 133.550 kb on - strand, within HGI48_RS00555 at 133.550 kb on - strand, within HGI48_RS00555 at 133.550 kb on - strand, within HGI48_RS00555 at 133.550 kb on - strand, within HGI48_RS00555 at 133.550 kb on - strand, within HGI48_RS00555 at 133.660 kb on + strand at 133.837 kb on + strand, within HGI48_RS00555 at 133.838 kb on - strand, within HGI48_RS00555 at 133.997 kb on - strand, within HGI48_RS00555 at 134.164 kb on + strand at 134.165 kb on - strand at 134.320 kb on + strand at 134.320 kb on + strand at 134.320 kb on + strand at 134.320 kb on + strand at 134.321 kb on - strand at 134.321 kb on - strand at 134.339 kb on + strand at 134.598 kb on + strand, within HGI48_RS00560 at 134.895 kb on + strand, within HGI48_RS00560 at 134.896 kb on - strand, within HGI48_RS00560 at 134.952 kb on + strand, within HGI48_RS00560 at 134.952 kb on + strand, within HGI48_RS00560 at 134.953 kb on - strand, within HGI48_RS00560 at 134.967 kb on + strand, within HGI48_RS00560 at 134.967 kb on + strand, within HGI48_RS00560 at 134.967 kb on + strand, within HGI48_RS00560 at 134.967 kb on + strand, within HGI48_RS00560 at 134.967 kb on + strand, within HGI48_RS00560 at 134.967 kb on + strand, within HGI48_RS00560 at 134.967 kb on + strand, within HGI48_RS00560 at 134.968 kb on - strand, within HGI48_RS00560 at 134.968 kb on - strand, within HGI48_RS00560 at 134.968 kb on - strand, within HGI48_RS00560 at 134.968 kb on - strand, within HGI48_RS00560 at 134.968 kb on - strand at 134.968 kb on - strand, within HGI48_RS00560 at 134.988 kb on - strand, within HGI48_RS00560 at 135.123 kb on + strand at 135.124 kb on - strand, within HGI48_RS00560 at 135.189 kb on + strand, within HGI48_RS00560 at 135.189 kb on + strand, within HGI48_RS00560 at 135.190 kb on - strand, within HGI48_RS00560 at 135.197 kb on + strand, within HGI48_RS00560 at 135.239 kb on + strand at 135.261 kb on + strand at 135.261 kb on + strand at 135.261 kb on + strand at 135.261 kb on + strand at 135.262 kb on - strand at 135.262 kb on - strand at 135.294 kb on + strand at 135.295 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 131,999 - HGI48_RS00550 0.52 +0.4 132,046 - HGI48_RS00550 0.56 +0.2 132,046 - HGI48_RS00550 0.56 -0.6 132,053 - HGI48_RS00550 0.57 -0.1 132,312 + HGI48_RS00550 0.81 -0.1 132,312 + HGI48_RS00550 0.81 -0.1 132,312 + HGI48_RS00550 0.81 +0.5 132,527 - -0.5 132,540 - +0.9 132,633 - +0.1 132,783 + -0.4 132,840 + +0.5 132,840 + +0.3 132,840 + -0.0 132,841 - -0.6 132,907 + +1.3 133,134 + HGI48_RS00555 0.26 -0.0 133,161 + HGI48_RS00555 0.28 -0.9 133,190 + HGI48_RS00555 0.30 -0.1 133,191 - HGI48_RS00555 0.30 +0.3 133,191 - HGI48_RS00555 0.30 +0.3 133,228 + HGI48_RS00555 0.32 -1.6 133,229 - HGI48_RS00555 0.32 +0.2 133,356 - HGI48_RS00555 0.40 +0.4 133,423 - HGI48_RS00555 0.44 -0.1 133,549 + HGI48_RS00555 0.52 -1.5 133,549 + HGI48_RS00555 0.52 -0.5 133,549 + HGI48_RS00555 0.52 -0.7 133,549 + HGI48_RS00555 0.52 +0.7 133,550 - HGI48_RS00555 0.52 +0.9 133,550 - HGI48_RS00555 0.52 +0.3 133,550 - HGI48_RS00555 0.52 -0.5 133,550 - HGI48_RS00555 0.52 -0.2 133,550 - HGI48_RS00555 0.52 -0.9 133,660 + +0.9 133,837 + HGI48_RS00555 0.70 -1.0 133,838 - HGI48_RS00555 0.70 +0.1 133,997 - HGI48_RS00555 0.80 -0.4 134,164 + -0.2 134,165 - -0.4 134,320 + -1.5 134,320 + -0.1 134,320 + -0.8 134,320 + -0.1 134,321 - -0.7 134,321 - +0.2 134,339 + -0.9 134,598 + HGI48_RS00560 0.28 +0.1 134,895 + HGI48_RS00560 0.58 -0.7 134,896 - HGI48_RS00560 0.58 -0.9 134,952 + HGI48_RS00560 0.63 -0.6 134,952 + HGI48_RS00560 0.63 -0.1 134,953 - HGI48_RS00560 0.63 -0.3 134,967 + HGI48_RS00560 0.65 -0.7 134,967 + HGI48_RS00560 0.65 -0.9 134,967 + HGI48_RS00560 0.65 -0.6 134,967 + HGI48_RS00560 0.65 -0.1 134,967 + HGI48_RS00560 0.65 +0.5 134,967 + HGI48_RS00560 0.65 +1.4 134,967 + HGI48_RS00560 0.65 -0.6 134,968 - HGI48_RS00560 0.65 +0.4 134,968 - HGI48_RS00560 0.65 -0.1 134,968 - HGI48_RS00560 0.65 +0.9 134,968 - HGI48_RS00560 0.65 -1.0 134,968 - +1.9 134,968 - HGI48_RS00560 0.65 +1.2 134,988 - HGI48_RS00560 0.67 -0.1 135,123 + -0.1 135,124 - HGI48_RS00560 0.80 +0.5 135,189 + HGI48_RS00560 0.87 -0.1 135,189 + HGI48_RS00560 0.87 +0.4 135,190 - HGI48_RS00560 0.87 -1.7 135,197 + HGI48_RS00560 0.87 -1.5 135,239 + -0.1 135,261 + -0.9 135,261 + -0.0 135,261 + +0.2 135,261 + +1.1 135,262 - -0.6 135,262 - +0.6 135,294 + -0.9 135,295 - -0.4
Or see this region's nucleotide sequence