Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00495 and HGI48_RS00500 are separated by 9 nucleotides HGI48_RS00500 and HGI48_RS00505 overlap by 4 nucleotides HGI48_RS00505 and HGI48_RS00510 overlap by 8 nucleotides
HGI48_RS00495: HGI48_RS00495 - acyl--CoA ligase, at 121,506 to 123,089
_RS00495
HGI48_RS00500: HGI48_RS00500 - hypothetical protein, at 123,099 to 124,013
_RS00500
HGI48_RS00505: HGI48_RS00505 - type III PLP-dependent enzyme, at 124,010 to 125,353
_RS00505
HGI48_RS00510: HGI48_RS00510 - hypothetical protein, at 125,346 to 125,657
_RS00510
Position (kb) 124
125
126 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 123.232 kb on + strand, within HGI48_RS00500 at 123.233 kb on - strand, within HGI48_RS00500 at 123.409 kb on + strand, within HGI48_RS00500 at 123.409 kb on + strand, within HGI48_RS00500 at 123.424 kb on + strand, within HGI48_RS00500 at 123.424 kb on + strand, within HGI48_RS00500 at 123.424 kb on + strand, within HGI48_RS00500 at 123.424 kb on + strand, within HGI48_RS00500 at 123.425 kb on - strand, within HGI48_RS00500 at 123.435 kb on + strand, within HGI48_RS00500 at 123.435 kb on + strand at 123.436 kb on - strand, within HGI48_RS00500 at 123.436 kb on - strand, within HGI48_RS00500 at 123.436 kb on - strand, within HGI48_RS00500 at 123.471 kb on + strand, within HGI48_RS00500 at 123.471 kb on + strand, within HGI48_RS00500 at 123.472 kb on - strand, within HGI48_RS00500 at 123.478 kb on - strand, within HGI48_RS00500 at 123.530 kb on - strand, within HGI48_RS00500 at 123.595 kb on + strand, within HGI48_RS00500 at 123.596 kb on - strand, within HGI48_RS00500 at 123.596 kb on - strand, within HGI48_RS00500 at 123.610 kb on + strand, within HGI48_RS00500 at 123.611 kb on - strand, within HGI48_RS00500 at 123.611 kb on - strand at 123.611 kb on - strand, within HGI48_RS00500 at 123.821 kb on + strand, within HGI48_RS00500 at 123.838 kb on - strand, within HGI48_RS00500 at 123.838 kb on - strand, within HGI48_RS00500 at 123.907 kb on + strand at 123.908 kb on - strand, within HGI48_RS00500 at 123.908 kb on - strand, within HGI48_RS00500 at 123.945 kb on + strand at 123.946 kb on - strand at 123.946 kb on - strand at 124.001 kb on + strand at 124.275 kb on + strand, within HGI48_RS00505 at 124.275 kb on + strand, within HGI48_RS00505 at 124.276 kb on - strand, within HGI48_RS00505 at 124.465 kb on - strand, within HGI48_RS00505 at 124.465 kb on - strand, within HGI48_RS00505 at 124.582 kb on - strand, within HGI48_RS00505 at 124.625 kb on + strand at 124.625 kb on + strand, within HGI48_RS00505 at 124.626 kb on - strand, within HGI48_RS00505 at 124.626 kb on - strand, within HGI48_RS00505 at 124.626 kb on - strand, within HGI48_RS00505 at 124.636 kb on + strand, within HGI48_RS00505 at 124.637 kb on - strand, within HGI48_RS00505 at 124.656 kb on - strand, within HGI48_RS00505 at 124.656 kb on - strand, within HGI48_RS00505 at 124.656 kb on - strand, within HGI48_RS00505 at 124.656 kb on - strand, within HGI48_RS00505 at 124.666 kb on + strand, within HGI48_RS00505 at 124.666 kb on + strand, within HGI48_RS00505 at 124.667 kb on - strand, within HGI48_RS00505 at 124.667 kb on - strand, within HGI48_RS00505 at 124.670 kb on - strand, within HGI48_RS00505 at 124.719 kb on + strand, within HGI48_RS00505 at 124.719 kb on + strand, within HGI48_RS00505 at 124.720 kb on - strand, within HGI48_RS00505 at 124.723 kb on + strand, within HGI48_RS00505 at 124.723 kb on + strand, within HGI48_RS00505 at 124.723 kb on + strand, within HGI48_RS00505 at 124.723 kb on + strand, within HGI48_RS00505 at 124.723 kb on + strand, within HGI48_RS00505 at 124.724 kb on - strand, within HGI48_RS00505 at 124.724 kb on - strand, within HGI48_RS00505 at 124.724 kb on - strand, within HGI48_RS00505 at 124.724 kb on - strand, within HGI48_RS00505 at 125.010 kb on + strand, within HGI48_RS00505 at 125.010 kb on + strand, within HGI48_RS00505 at 125.011 kb on - strand, within HGI48_RS00505 at 125.054 kb on + strand, within HGI48_RS00505 at 125.142 kb on + strand, within HGI48_RS00505 at 125.142 kb on + strand, within HGI48_RS00505 at 125.143 kb on - strand, within HGI48_RS00505 at 125.143 kb on - strand, within HGI48_RS00505 at 125.145 kb on + strand, within HGI48_RS00505 at 125.145 kb on + strand, within HGI48_RS00505 at 125.146 kb on - strand, within HGI48_RS00505 at 125.146 kb on - strand, within HGI48_RS00505 at 125.146 kb on - strand, within HGI48_RS00505 at 125.214 kb on + strand, within HGI48_RS00505 at 125.214 kb on + strand, within HGI48_RS00505 at 125.214 kb on + strand, within HGI48_RS00505 at 125.215 kb on - strand, within HGI48_RS00505 at 125.215 kb on - strand, within HGI48_RS00505 at 125.220 kb on + strand at 125.220 kb on + strand at 125.221 kb on - strand at 125.221 kb on - strand at 125.221 kb on - strand at 125.221 kb on - strand at 125.221 kb on - strand at 125.221 kb on - strand at 125.231 kb on - strand at 125.270 kb on + strand at 125.270 kb on + strand at 125.270 kb on + strand at 125.270 kb on + strand at 125.270 kb on + strand at 125.270 kb on + strand at 125.270 kb on + strand at 125.271 kb on - strand at 125.271 kb on - strand at 125.271 kb on - strand at 125.271 kb on - strand at 125.271 kb on - strand at 125.271 kb on - strand at 125.271 kb on - strand at 125.271 kb on - strand at 125.274 kb on + strand at 125.274 kb on + strand at 125.275 kb on - strand at 125.288 kb on + strand at 125.288 kb on + strand at 125.288 kb on + strand at 125.288 kb on + strand at 125.289 kb on - strand at 125.289 kb on - strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.292 kb on + strand at 125.292 kb on + strand at 125.292 kb on + strand at 125.292 kb on + strand at 125.292 kb on + strand at 125.292 kb on + strand at 125.292 kb on + strand at 125.292 kb on + strand at 125.292 kb on + strand at 125.292 kb on + strand at 125.293 kb on - strand at 125.293 kb on - strand at 125.293 kb on - strand at 125.293 kb on - strand at 125.293 kb on - strand at 125.293 kb on - strand at 125.293 kb on - strand at 125.293 kb on - strand at 125.293 kb on - strand at 125.296 kb on + strand at 125.296 kb on + strand at 125.296 kb on + strand at 125.297 kb on - strand at 125.324 kb on - strand at 125.455 kb on + strand, within HGI48_RS00510 at 125.612 kb on + strand, within HGI48_RS00510 at 125.639 kb on + strand at 125.639 kb on + strand at 125.640 kb on - strand at 125.640 kb on - strand at 125.650 kb on + strand at 125.651 kb on - strand at 125.660 kb on + strand at 125.660 kb on + strand at 125.661 kb on - strand at 125.661 kb on - strand at 125.661 kb on - strand at 125.661 kb on - strand at 125.661 kb on - strand at 125.669 kb on + strand at 125.669 kb on + strand at 125.670 kb on - strand at 125.675 kb on + strand at 125.676 kb on - strand at 125.690 kb on + strand at 125.690 kb on + strand at 125.690 kb on + strand at 125.690 kb on + strand at 125.690 kb on + strand at 125.690 kb on + strand at 125.691 kb on - strand at 125.691 kb on - strand at 125.693 kb on - strand at 125.693 kb on - strand at 125.781 kb on + strand at 125.781 kb on + strand at 125.781 kb on + strand at 125.781 kb on + strand at 125.782 kb on - strand at 125.782 kb on - strand at 125.782 kb on - strand at 125.782 kb on - strand at 125.782 kb on - strand at 125.787 kb on - strand at 125.794 kb on + strand at 125.795 kb on - strand at 125.798 kb on + strand at 125.798 kb on + strand at 125.799 kb on - strand at 125.814 kb on + strand at 125.814 kb on + strand at 125.814 kb on + strand at 125.814 kb on + strand at 125.814 kb on + strand at 125.814 kb on + strand at 125.814 kb on + strand at 125.815 kb on - strand at 125.815 kb on - strand at 125.815 kb on - strand at 125.815 kb on - strand at 125.818 kb on + strand at 125.818 kb on + strand at 125.818 kb on + strand at 125.818 kb on + strand at 125.818 kb on + strand at 125.819 kb on - strand at 125.819 kb on - strand at 125.859 kb on - strand at 125.883 kb on + strand at 125.883 kb on + strand at 125.884 kb on - strand at 125.885 kb on + strand at 125.886 kb on - strand at 125.895 kb on + strand at 125.895 kb on + strand at 125.896 kb on - strand at 125.896 kb on - strand at 125.896 kb on - strand at 125.896 kb on - strand at 125.918 kb on + strand at 125.919 kb on - strand at 125.970 kb on - strand at 125.970 kb on - strand at 126.043 kb on + strand at 126.043 kb on + strand at 126.043 kb on + strand at 126.043 kb on + strand at 126.044 kb on - strand at 126.044 kb on - strand at 126.044 kb on - strand at 126.044 kb on - strand at 126.044 kb on - strand at 126.045 kb on + strand at 126.045 kb on + strand at 126.045 kb on + strand at 126.045 kb on + strand at 126.046 kb on - strand at 126.051 kb on + strand at 126.051 kb on + strand at 126.051 kb on + strand at 126.051 kb on + strand at 126.051 kb on + strand at 126.051 kb on + strand at 126.051 kb on + strand at 126.052 kb on - strand at 126.052 kb on - strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.054 kb on - strand at 126.054 kb on - strand at 126.054 kb on - strand at 126.054 kb on - strand at 126.054 kb on - strand at 126.054 kb on - strand at 126.054 kb on - strand at 126.054 kb on - strand at 126.055 kb on + strand at 126.055 kb on + strand at 126.056 kb on - strand at 126.056 kb on - strand at 126.082 kb on + strand at 126.221 kb on + strand at 126.224 kb on + strand at 126.225 kb on - strand at 126.316 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 123,232 + HGI48_RS00500 0.15 -0.1 123,233 - HGI48_RS00500 0.15 -1.4 123,409 + HGI48_RS00500 0.34 -1.5 123,409 + HGI48_RS00500 0.34 -0.5 123,424 + HGI48_RS00500 0.36 +0.9 123,424 + HGI48_RS00500 0.36 -0.7 123,424 + HGI48_RS00500 0.36 -0.3 123,424 + HGI48_RS00500 0.36 +0.9 123,425 - HGI48_RS00500 0.36 +1.4 123,435 + HGI48_RS00500 0.37 +0.4 123,435 + -0.7 123,436 - HGI48_RS00500 0.37 -0.0 123,436 - HGI48_RS00500 0.37 -1.1 123,436 - HGI48_RS00500 0.37 -0.7 123,471 + HGI48_RS00500 0.41 +0.4 123,471 + HGI48_RS00500 0.41 -1.5 123,472 - HGI48_RS00500 0.41 +0.2 123,478 - HGI48_RS00500 0.41 +0.6 123,530 - HGI48_RS00500 0.47 -0.2 123,595 + HGI48_RS00500 0.54 -2.3 123,596 - HGI48_RS00500 0.54 -0.4 123,596 - HGI48_RS00500 0.54 +0.2 123,610 + HGI48_RS00500 0.56 -0.3 123,611 - HGI48_RS00500 0.56 -0.7 123,611 - +1.4 123,611 - HGI48_RS00500 0.56 -0.2 123,821 + HGI48_RS00500 0.79 -0.7 123,838 - HGI48_RS00500 0.81 +0.4 123,838 - HGI48_RS00500 0.81 +0.8 123,907 + +2.9 123,908 - HGI48_RS00500 0.88 -0.1 123,908 - HGI48_RS00500 0.88 -0.6 123,945 + +1.3 123,946 - +0.4 123,946 - -1.3 124,001 + -0.7 124,275 + HGI48_RS00505 0.20 +0.3 124,275 + HGI48_RS00505 0.20 -1.1 124,276 - HGI48_RS00505 0.20 +0.7 124,465 - HGI48_RS00505 0.34 -0.8 124,465 - HGI48_RS00505 0.34 -1.1 124,582 - HGI48_RS00505 0.43 -2.3 124,625 + -0.7 124,625 + HGI48_RS00505 0.46 +1.1 124,626 - HGI48_RS00505 0.46 +0.1 124,626 - HGI48_RS00505 0.46 +0.3 124,626 - HGI48_RS00505 0.46 -1.0 124,636 + HGI48_RS00505 0.47 -1.1 124,637 - HGI48_RS00505 0.47 +0.3 124,656 - HGI48_RS00505 0.48 -1.1 124,656 - HGI48_RS00505 0.48 -2.1 124,656 - HGI48_RS00505 0.48 -0.5 124,656 - HGI48_RS00505 0.48 -0.7 124,666 + HGI48_RS00505 0.49 -1.1 124,666 + HGI48_RS00505 0.49 +0.4 124,667 - HGI48_RS00505 0.49 -0.6 124,667 - HGI48_RS00505 0.49 -1.9 124,670 - HGI48_RS00505 0.49 +0.1 124,719 + HGI48_RS00505 0.53 +1.0 124,719 + HGI48_RS00505 0.53 +0.4 124,720 - HGI48_RS00505 0.53 -1.1 124,723 + HGI48_RS00505 0.53 +0.6 124,723 + HGI48_RS00505 0.53 -1.1 124,723 + HGI48_RS00505 0.53 -0.6 124,723 + HGI48_RS00505 0.53 -0.5 124,723 + HGI48_RS00505 0.53 -0.4 124,724 - HGI48_RS00505 0.53 +0.6 124,724 - HGI48_RS00505 0.53 -0.9 124,724 - HGI48_RS00505 0.53 +0.2 124,724 - HGI48_RS00505 0.53 -0.3 125,010 + HGI48_RS00505 0.74 -0.5 125,010 + HGI48_RS00505 0.74 +0.2 125,011 - HGI48_RS00505 0.74 +1.7 125,054 + HGI48_RS00505 0.78 -2.1 125,142 + HGI48_RS00505 0.84 -0.7 125,142 + HGI48_RS00505 0.84 -0.2 125,143 - HGI48_RS00505 0.84 +0.6 125,143 - HGI48_RS00505 0.84 -0.4 125,145 + HGI48_RS00505 0.84 -0.3 125,145 + HGI48_RS00505 0.84 +0.3 125,146 - HGI48_RS00505 0.85 -0.5 125,146 - HGI48_RS00505 0.85 +0.9 125,146 - HGI48_RS00505 0.85 +0.3 125,214 + HGI48_RS00505 0.90 -0.4 125,214 + HGI48_RS00505 0.90 -0.6 125,214 + HGI48_RS00505 0.90 -0.1 125,215 - HGI48_RS00505 0.90 +0.7 125,215 - HGI48_RS00505 0.90 -0.3 125,220 + -1.3 125,220 + -0.8 125,221 - -0.0 125,221 - -0.3 125,221 - -0.3 125,221 - +0.4 125,221 - -1.5 125,221 - -0.3 125,231 - -0.1 125,270 + +0.2 125,270 + +0.5 125,270 + +0.4 125,270 + +2.6 125,270 + +0.4 125,270 + -2.3 125,270 + +1.7 125,271 - -0.3 125,271 - +0.3 125,271 - -2.1 125,271 - -1.9 125,271 - -0.5 125,271 - -3.0 125,271 - +1.9 125,271 - -1.5 125,274 + +0.3 125,274 + -0.4 125,275 - -0.1 125,288 + -0.1 125,288 + +0.9 125,288 + +0.9 125,288 + +2.1 125,289 - -0.1 125,289 - +0.9 125,290 + +0.0 125,290 + +0.4 125,290 + +0.3 125,290 + -0.9 125,290 + -0.7 125,290 + -1.7 125,290 + -0.9 125,290 + -1.7 125,290 + +0.3 125,290 + -1.5 125,290 + +0.3 125,290 + +0.1 125,290 + -1.1 125,290 + -0.1 125,290 + -0.7 125,290 + +1.4 125,290 + -1.9 125,291 - +1.7 125,291 - +0.2 125,291 - +0.6 125,291 - -0.0 125,291 - +0.3 125,291 - +0.2 125,291 - +1.3 125,291 - -0.1 125,291 - -0.1 125,291 - +0.3 125,291 - -1.1 125,291 - +0.7 125,291 - +0.3 125,291 - +0.6 125,291 - -0.4 125,291 - +0.5 125,291 - -1.1 125,291 - +0.3 125,292 + -1.6 125,292 + +0.3 125,292 + +0.9 125,292 + -0.3 125,292 + +0.4 125,292 + -0.6 125,292 + -0.5 125,292 + -0.4 125,292 + +0.7 125,292 + -2.1 125,293 - +0.6 125,293 - -0.5 125,293 - -0.0 125,293 - -0.6 125,293 - +2.1 125,293 - -1.3 125,293 - -0.3 125,293 - +0.3 125,293 - -0.5 125,296 + +1.9 125,296 + +1.1 125,296 + -0.5 125,297 - +0.1 125,324 - +0.3 125,455 + HGI48_RS00510 0.35 +1.2 125,612 + HGI48_RS00510 0.85 +0.2 125,639 + +0.3 125,639 + +0.9 125,640 - +0.7 125,640 - -1.8 125,650 + +0.4 125,651 - -0.7 125,660 + +0.3 125,660 + +0.2 125,661 - +0.6 125,661 - +0.7 125,661 - -0.1 125,661 - -0.4 125,661 - -0.1 125,669 + +0.5 125,669 + -1.5 125,670 - +0.5 125,675 + -1.5 125,676 - +0.3 125,690 + +0.3 125,690 + +0.1 125,690 + -1.1 125,690 + -2.3 125,690 + +0.3 125,690 + -0.4 125,691 - -2.2 125,691 - +0.3 125,693 - +1.0 125,693 - -2.5 125,781 + +0.4 125,781 + -0.1 125,781 + +1.2 125,781 + +1.3 125,782 - -1.1 125,782 - -2.1 125,782 - -0.1 125,782 - +0.3 125,782 - +1.2 125,787 - +0.3 125,794 + +0.1 125,795 - -0.4 125,798 + +0.1 125,798 + -0.1 125,799 - -1.9 125,814 + +0.3 125,814 + -1.1 125,814 + -0.5 125,814 + -0.6 125,814 + -0.9 125,814 + +0.1 125,814 + -1.8 125,815 - -1.3 125,815 - -0.2 125,815 - -0.4 125,815 - +0.9 125,818 + +0.1 125,818 + -1.0 125,818 + +2.1 125,818 + +1.2 125,818 + -0.3 125,819 - -0.1 125,819 - -0.1 125,859 - -0.1 125,883 + -1.7 125,883 + +0.3 125,884 - +1.7 125,885 + -0.5 125,886 - +0.6 125,895 + -1.5 125,895 + +1.4 125,896 - -1.0 125,896 - -0.3 125,896 - +0.6 125,896 - +1.9 125,918 + +0.3 125,919 - +1.1 125,970 - -0.5 125,970 - +1.3 126,043 + +0.3 126,043 + +0.9 126,043 + -1.0 126,043 + -0.1 126,044 - +0.5 126,044 - -3.6 126,044 - -0.6 126,044 - -1.7 126,044 - +0.3 126,045 + -0.3 126,045 + -2.3 126,045 + -0.7 126,045 + -0.1 126,046 - -0.4 126,051 + -0.1 126,051 + +0.6 126,051 + +0.7 126,051 + -0.1 126,051 + -0.7 126,051 + -0.5 126,051 + -0.0 126,052 - +0.6 126,052 - -0.1 126,053 + -0.4 126,053 + -0.1 126,053 + -0.5 126,053 + -1.7 126,053 + +0.5 126,053 + -0.3 126,053 + -1.3 126,053 + -0.8 126,053 + +0.3 126,053 + -0.5 126,053 + -2.8 126,054 - -2.8 126,054 - -0.1 126,054 - +2.3 126,054 - -1.5 126,054 - -0.2 126,054 - -2.1 126,054 - -0.7 126,054 - +1.1 126,055 + +0.0 126,055 + -0.5 126,056 - +0.9 126,056 - +1.3 126,082 + -2.1 126,221 + +1.1 126,224 + +0.1 126,225 - -2.4 126,316 + +0.1
Or see this region's nucleotide sequence