Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00410 and HGI48_RS00415 are separated by 647 nucleotides HGI48_RS00415 and HGI48_RS00420 are separated by 4 nucleotides
HGI48_RS00410: HGI48_RS00410 - AraC family transcriptional regulator VfmE, at 103,020 to 103,583
_RS00410
HGI48_RS00415: HGI48_RS00415 - ABC transporter ATP-binding protein, at 104,231 to 104,938
_RS00415
HGI48_RS00420: HGI48_RS00420 - ABC transporter permease, at 104,943 to 107,378
_RS00420
Position (kb) 104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 103.238 kb on - strand, within HGI48_RS00410 at 103.244 kb on + strand, within HGI48_RS00410 at 103.271 kb on + strand, within HGI48_RS00410 at 103.271 kb on + strand, within HGI48_RS00410 at 103.271 kb on + strand, within HGI48_RS00410 at 103.271 kb on + strand, within HGI48_RS00410 at 103.272 kb on - strand, within HGI48_RS00410 at 103.272 kb on - strand, within HGI48_RS00410 at 103.302 kb on + strand, within HGI48_RS00410 at 103.303 kb on - strand, within HGI48_RS00410 at 103.303 kb on - strand, within HGI48_RS00410 at 103.303 kb on - strand, within HGI48_RS00410 at 103.303 kb on - strand, within HGI48_RS00410 at 103.329 kb on - strand, within HGI48_RS00410 at 103.334 kb on + strand, within HGI48_RS00410 at 103.334 kb on + strand, within HGI48_RS00410 at 103.336 kb on + strand, within HGI48_RS00410 at 103.337 kb on - strand, within HGI48_RS00410 at 103.407 kb on - strand, within HGI48_RS00410 at 103.407 kb on - strand, within HGI48_RS00410 at 103.409 kb on + strand, within HGI48_RS00410 at 103.409 kb on + strand, within HGI48_RS00410 at 103.409 kb on + strand, within HGI48_RS00410 at 103.409 kb on + strand, within HGI48_RS00410 at 103.410 kb on - strand at 103.412 kb on + strand, within HGI48_RS00410 at 103.412 kb on + strand, within HGI48_RS00410 at 103.413 kb on - strand, within HGI48_RS00410 at 103.434 kb on - strand, within HGI48_RS00410 at 103.435 kb on + strand, within HGI48_RS00410 at 103.435 kb on + strand, within HGI48_RS00410 at 103.436 kb on - strand, within HGI48_RS00410 at 103.436 kb on - strand, within HGI48_RS00410 at 103.436 kb on - strand, within HGI48_RS00410 at 103.442 kb on + strand, within HGI48_RS00410 at 103.443 kb on - strand at 103.443 kb on - strand, within HGI48_RS00410 at 103.466 kb on + strand, within HGI48_RS00410 at 103.466 kb on + strand, within HGI48_RS00410 at 103.467 kb on - strand, within HGI48_RS00410 at 103.470 kb on - strand, within HGI48_RS00410 at 103.470 kb on - strand, within HGI48_RS00410 at 103.496 kb on + strand, within HGI48_RS00410 at 103.510 kb on + strand, within HGI48_RS00410 at 103.511 kb on - strand, within HGI48_RS00410 at 103.511 kb on - strand, within HGI48_RS00410 at 103.511 kb on - strand, within HGI48_RS00410 at 103.514 kb on + strand at 103.515 kb on - strand, within HGI48_RS00410 at 103.542 kb on - strand at 103.564 kb on + strand at 103.565 kb on - strand at 103.565 kb on - strand at 103.565 kb on - strand at 103.575 kb on + strand at 103.575 kb on + strand at 103.576 kb on - strand at 103.576 kb on - strand at 103.576 kb on - strand at 103.667 kb on + strand at 103.667 kb on + strand at 103.667 kb on + strand at 103.667 kb on + strand at 103.667 kb on + strand at 103.667 kb on + strand at 103.667 kb on + strand at 103.667 kb on + strand at 103.667 kb on + strand at 103.668 kb on - strand at 103.668 kb on - strand at 103.687 kb on + strand at 103.746 kb on + strand at 103.747 kb on - strand at 103.890 kb on + strand at 103.891 kb on - strand at 103.891 kb on - strand at 103.891 kb on - strand at 103.976 kb on + strand at 104.033 kb on + strand at 104.124 kb on - strand at 104.124 kb on - strand at 104.124 kb on - strand at 104.153 kb on - strand at 104.153 kb on - strand at 104.153 kb on - strand at 104.176 kb on + strand at 104.176 kb on + strand at 104.176 kb on + strand at 104.176 kb on + strand at 104.177 kb on - strand at 104.209 kb on - strand at 104.209 kb on - strand at 104.209 kb on - strand at 104.209 kb on - strand at 104.209 kb on - strand at 104.212 kb on + strand at 104.212 kb on + strand at 104.212 kb on + strand at 104.212 kb on + strand at 104.212 kb on + strand at 104.212 kb on + strand at 104.212 kb on + strand at 104.212 kb on + strand at 104.213 kb on - strand at 104.213 kb on - strand at 104.213 kb on - strand at 104.213 kb on - strand at 104.213 kb on - strand at 104.213 kb on - strand at 104.213 kb on - strand at 104.214 kb on + strand at 104.215 kb on - strand at 104.215 kb on - strand at 104.215 kb on - strand at 104.215 kb on - strand at 104.215 kb on - strand at 104.254 kb on + strand at 104.254 kb on + strand at 104.254 kb on + strand at 104.263 kb on + strand at 104.275 kb on + strand at 104.310 kb on + strand, within HGI48_RS00415 at 104.310 kb on + strand, within HGI48_RS00415 at 104.310 kb on + strand, within HGI48_RS00415 at 104.311 kb on - strand, within HGI48_RS00415 at 104.311 kb on - strand, within HGI48_RS00415 at 104.311 kb on - strand, within HGI48_RS00415 at 104.311 kb on - strand, within HGI48_RS00415 at 104.311 kb on - strand, within HGI48_RS00415 at 104.311 kb on - strand, within HGI48_RS00415 at 104.320 kb on + strand at 104.320 kb on + strand, within HGI48_RS00415 at 104.320 kb on + strand, within HGI48_RS00415 at 104.321 kb on - strand, within HGI48_RS00415 at 104.321 kb on - strand, within HGI48_RS00415 at 104.321 kb on - strand, within HGI48_RS00415 at 104.336 kb on + strand, within HGI48_RS00415 at 104.336 kb on + strand, within HGI48_RS00415 at 104.336 kb on + strand, within HGI48_RS00415 at 104.336 kb on + strand, within HGI48_RS00415 at 104.337 kb on - strand, within HGI48_RS00415 at 104.337 kb on - strand, within HGI48_RS00415 at 104.337 kb on - strand, within HGI48_RS00415 at 104.337 kb on - strand, within HGI48_RS00415 at 104.445 kb on + strand, within HGI48_RS00415 at 104.445 kb on + strand, within HGI48_RS00415 at 104.445 kb on + strand, within HGI48_RS00415 at 104.445 kb on + strand, within HGI48_RS00415 at 104.445 kb on + strand, within HGI48_RS00415 at 104.445 kb on + strand, within HGI48_RS00415 at 104.445 kb on + strand, within HGI48_RS00415 at 104.445 kb on + strand, within HGI48_RS00415 at 104.445 kb on + strand, within HGI48_RS00415 at 104.446 kb on - strand, within HGI48_RS00415 at 104.446 kb on - strand at 104.446 kb on - strand, within HGI48_RS00415 at 104.446 kb on - strand, within HGI48_RS00415 at 104.500 kb on + strand, within HGI48_RS00415 at 104.501 kb on - strand, within HGI48_RS00415 at 104.567 kb on + strand, within HGI48_RS00415 at 104.567 kb on + strand, within HGI48_RS00415 at 104.568 kb on - strand, within HGI48_RS00415 at 104.568 kb on - strand, within HGI48_RS00415 at 104.789 kb on - strand, within HGI48_RS00415 at 104.789 kb on - strand, within HGI48_RS00415 at 104.789 kb on - strand, within HGI48_RS00415 at 104.789 kb on - strand, within HGI48_RS00415 at 104.789 kb on - strand at 104.789 kb on - strand, within HGI48_RS00415 at 104.789 kb on - strand, within HGI48_RS00415 at 104.789 kb on - strand, within HGI48_RS00415 at 104.950 kb on + strand at 104.951 kb on - strand at 105.051 kb on + strand at 105.051 kb on + strand at 105.052 kb on - strand at 105.057 kb on + strand at 105.058 kb on - strand at 105.058 kb on - strand at 105.082 kb on - strand at 105.180 kb on + strand at 105.180 kb on + strand at 105.181 kb on - strand at 105.181 kb on - strand at 105.218 kb on + strand, within HGI48_RS00420 at 105.219 kb on - strand, within HGI48_RS00420 at 105.277 kb on - strand, within HGI48_RS00420 at 105.302 kb on + strand, within HGI48_RS00420 at 105.302 kb on + strand, within HGI48_RS00420 at 105.302 kb on + strand, within HGI48_RS00420 at 105.303 kb on - strand, within HGI48_RS00420 at 105.303 kb on - strand, within HGI48_RS00420 at 105.309 kb on - strand, within HGI48_RS00420 at 105.309 kb on - strand, within HGI48_RS00420 at 105.309 kb on - strand at 105.314 kb on + strand, within HGI48_RS00420 at 105.315 kb on - strand, within HGI48_RS00420 at 105.388 kb on + strand at 105.397 kb on - strand, within HGI48_RS00420 at 105.440 kb on + strand, within HGI48_RS00420 at 105.441 kb on - strand, within HGI48_RS00420 at 105.485 kb on + strand, within HGI48_RS00420 at 105.488 kb on + strand, within HGI48_RS00420 at 105.488 kb on + strand, within HGI48_RS00420 at 105.539 kb on + strand, within HGI48_RS00420 at 105.540 kb on - strand at 105.540 kb on - strand, within HGI48_RS00420 at 105.589 kb on - strand, within HGI48_RS00420 at 105.594 kb on + strand, within HGI48_RS00420 at 105.595 kb on - strand, within HGI48_RS00420 at 105.671 kb on + strand, within HGI48_RS00420 at 105.671 kb on + strand, within HGI48_RS00420 at 105.676 kb on - strand, within HGI48_RS00420 at 105.689 kb on + strand, within HGI48_RS00420 at 105.690 kb on - strand, within HGI48_RS00420 at 105.754 kb on + strand, within HGI48_RS00420 at 105.806 kb on + strand, within HGI48_RS00420 at 105.806 kb on + strand at 105.820 kb on + strand, within HGI48_RS00420
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 103,238 - HGI48_RS00410 0.39 +0.0 103,244 + HGI48_RS00410 0.40 -1.5 103,271 + HGI48_RS00410 0.45 -0.7 103,271 + HGI48_RS00410 0.45 +0.2 103,271 + HGI48_RS00410 0.45 -0.6 103,271 + HGI48_RS00410 0.45 -0.5 103,272 - HGI48_RS00410 0.45 -0.3 103,272 - HGI48_RS00410 0.45 -0.0 103,302 + HGI48_RS00410 0.50 -0.1 103,303 - HGI48_RS00410 0.50 +0.7 103,303 - HGI48_RS00410 0.50 +0.9 103,303 - HGI48_RS00410 0.50 +0.1 103,303 - HGI48_RS00410 0.50 -0.1 103,329 - HGI48_RS00410 0.55 -0.4 103,334 + HGI48_RS00410 0.56 -0.1 103,334 + HGI48_RS00410 0.56 +0.1 103,336 + HGI48_RS00410 0.56 -0.1 103,337 - HGI48_RS00410 0.56 -3.2 103,407 - HGI48_RS00410 0.69 -0.6 103,407 - HGI48_RS00410 0.69 -1.6 103,409 + HGI48_RS00410 0.69 +1.4 103,409 + HGI48_RS00410 0.69 +0.5 103,409 + HGI48_RS00410 0.69 +0.4 103,409 + HGI48_RS00410 0.69 +0.4 103,410 - +0.9 103,412 + HGI48_RS00410 0.70 -1.5 103,412 + HGI48_RS00410 0.70 -1.1 103,413 - HGI48_RS00410 0.70 -0.4 103,434 - HGI48_RS00410 0.73 +0.1 103,435 + HGI48_RS00410 0.74 +0.4 103,435 + HGI48_RS00410 0.74 -1.4 103,436 - HGI48_RS00410 0.74 +0.5 103,436 - HGI48_RS00410 0.74 -0.6 103,436 - HGI48_RS00410 0.74 -0.7 103,442 + HGI48_RS00410 0.75 -1.1 103,443 - +2.2 103,443 - HGI48_RS00410 0.75 -0.9 103,466 + HGI48_RS00410 0.79 -0.5 103,466 + HGI48_RS00410 0.79 -1.1 103,467 - HGI48_RS00410 0.79 -1.9 103,470 - HGI48_RS00410 0.80 -0.9 103,470 - HGI48_RS00410 0.80 +1.1 103,496 + HGI48_RS00410 0.84 +1.2 103,510 + HGI48_RS00410 0.87 +0.1 103,511 - HGI48_RS00410 0.87 +0.3 103,511 - HGI48_RS00410 0.87 +1.4 103,511 - HGI48_RS00410 0.87 -0.1 103,514 + +1.4 103,515 - HGI48_RS00410 0.88 -0.9 103,542 - -0.6 103,564 + -0.5 103,565 - -0.1 103,565 - -3.0 103,565 - +0.1 103,575 + -0.7 103,575 + +1.6 103,576 - +2.3 103,576 - +0.9 103,576 - -0.4 103,667 + +0.5 103,667 + -0.5 103,667 + +0.4 103,667 + -0.4 103,667 + +1.2 103,667 + +0.7 103,667 + -0.1 103,667 + -0.7 103,667 + -0.6 103,668 - +0.1 103,668 - -0.7 103,687 + -0.9 103,746 + -1.5 103,747 - -1.0 103,890 + +0.1 103,891 - +0.0 103,891 - -1.7 103,891 - +0.5 103,976 + -0.6 104,033 + +0.1 104,124 - -0.1 104,124 - -0.5 104,124 - +0.5 104,153 - +0.4 104,153 - -0.9 104,153 - -0.1 104,176 + +2.1 104,176 + -0.9 104,176 + -0.1 104,176 + -1.9 104,177 - -1.1 104,209 - -0.4 104,209 - +0.6 104,209 - -1.3 104,209 - +1.3 104,209 - -0.1 104,212 + -1.9 104,212 + +0.4 104,212 + +0.1 104,212 + -0.9 104,212 + -0.6 104,212 + +0.4 104,212 + +2.1 104,212 + -0.0 104,213 - +1.0 104,213 - -0.6 104,213 - -0.0 104,213 - +0.2 104,213 - -0.2 104,213 - -0.1 104,213 - -0.6 104,214 + +1.1 104,215 - +1.1 104,215 - -0.1 104,215 - -1.1 104,215 - -1.6 104,215 - +0.1 104,254 + +1.1 104,254 + -0.9 104,254 + +1.0 104,263 + +0.1 104,275 + -0.5 104,310 + HGI48_RS00415 0.11 -2.5 104,310 + HGI48_RS00415 0.11 +0.4 104,310 + HGI48_RS00415 0.11 +0.3 104,311 - HGI48_RS00415 0.11 -1.1 104,311 - HGI48_RS00415 0.11 -0.8 104,311 - HGI48_RS00415 0.11 -1.4 104,311 - HGI48_RS00415 0.11 -2.1 104,311 - HGI48_RS00415 0.11 +1.3 104,311 - HGI48_RS00415 0.11 +0.4 104,320 + -0.7 104,320 + HGI48_RS00415 0.13 -0.3 104,320 + HGI48_RS00415 0.13 -0.5 104,321 - HGI48_RS00415 0.13 -0.4 104,321 - HGI48_RS00415 0.13 +0.6 104,321 - HGI48_RS00415 0.13 +0.1 104,336 + HGI48_RS00415 0.15 -0.1 104,336 + HGI48_RS00415 0.15 -0.0 104,336 + HGI48_RS00415 0.15 +1.0 104,336 + HGI48_RS00415 0.15 -0.7 104,337 - HGI48_RS00415 0.15 +0.3 104,337 - HGI48_RS00415 0.15 +0.9 104,337 - HGI48_RS00415 0.15 +0.4 104,337 - HGI48_RS00415 0.15 -0.7 104,445 + HGI48_RS00415 0.30 +0.6 104,445 + HGI48_RS00415 0.30 +0.7 104,445 + HGI48_RS00415 0.30 +0.4 104,445 + HGI48_RS00415 0.30 +1.7 104,445 + HGI48_RS00415 0.30 +0.9 104,445 + HGI48_RS00415 0.30 -0.1 104,445 + HGI48_RS00415 0.30 +0.4 104,445 + HGI48_RS00415 0.30 -1.1 104,445 + HGI48_RS00415 0.30 -0.3 104,446 - HGI48_RS00415 0.30 +1.4 104,446 - -0.7 104,446 - HGI48_RS00415 0.30 +0.9 104,446 - HGI48_RS00415 0.30 -0.1 104,500 + HGI48_RS00415 0.38 -1.9 104,501 - HGI48_RS00415 0.38 -0.6 104,567 + HGI48_RS00415 0.47 +0.3 104,567 + HGI48_RS00415 0.47 +0.3 104,568 - HGI48_RS00415 0.48 -0.9 104,568 - HGI48_RS00415 0.48 +0.9 104,789 - HGI48_RS00415 0.79 -0.2 104,789 - HGI48_RS00415 0.79 +0.4 104,789 - HGI48_RS00415 0.79 -0.1 104,789 - HGI48_RS00415 0.79 +0.5 104,789 - +0.3 104,789 - HGI48_RS00415 0.79 +1.0 104,789 - HGI48_RS00415 0.79 -1.1 104,789 - HGI48_RS00415 0.79 -0.3 104,950 + -0.7 104,951 - -1.1 105,051 + -1.7 105,051 + -0.1 105,052 - -1.6 105,057 + -1.9 105,058 - -1.7 105,058 - -0.9 105,082 - -0.1 105,180 + -0.1 105,180 + -2.3 105,181 - +0.3 105,181 - -2.1 105,218 + HGI48_RS00420 0.11 -0.5 105,219 - HGI48_RS00420 0.11 -0.8 105,277 - HGI48_RS00420 0.14 -1.2 105,302 + HGI48_RS00420 0.15 +1.7 105,302 + HGI48_RS00420 0.15 -1.5 105,302 + HGI48_RS00420 0.15 -0.1 105,303 - HGI48_RS00420 0.15 -0.6 105,303 - HGI48_RS00420 0.15 -1.7 105,309 - HGI48_RS00420 0.15 -0.9 105,309 - HGI48_RS00420 0.15 -1.7 105,309 - -0.7 105,314 + HGI48_RS00420 0.15 -0.8 105,315 - HGI48_RS00420 0.15 -0.5 105,388 + +0.9 105,397 - HGI48_RS00420 0.19 -1.9 105,440 + HGI48_RS00420 0.20 -1.7 105,441 - HGI48_RS00420 0.20 +1.9 105,485 + HGI48_RS00420 0.22 +1.0 105,488 + HGI48_RS00420 0.22 -1.1 105,488 + HGI48_RS00420 0.22 -1.3 105,539 + HGI48_RS00420 0.24 -0.1 105,540 - +0.9 105,540 - HGI48_RS00420 0.25 -0.3 105,589 - HGI48_RS00420 0.27 -0.7 105,594 + HGI48_RS00420 0.27 -0.1 105,595 - HGI48_RS00420 0.27 +0.0 105,671 + HGI48_RS00420 0.30 +0.5 105,671 + HGI48_RS00420 0.30 -0.1 105,676 - HGI48_RS00420 0.30 -1.5 105,689 + HGI48_RS00420 0.31 -0.6 105,690 - HGI48_RS00420 0.31 +1.1 105,754 + HGI48_RS00420 0.33 -0.1 105,806 + HGI48_RS00420 0.35 -1.0 105,806 + +1.4 105,820 + HGI48_RS00420 0.36 -1.5
Or see this region's nucleotide sequence