Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00345 and HGI48_RS00350 overlap by 6 nucleotides HGI48_RS00350 and HGI48_RS00355 are separated by 119 nucleotides HGI48_RS00355 and HGI48_RS00360 are separated by 96 nucleotides HGI48_RS00360 and HGI48_RS00365 are separated by 358 nucleotides
HGI48_RS00345: HGI48_RS00345 - nickel/cobalt efflux protein RcnA, at 88,219 to 89,160
_RS00345
HGI48_RS00350: HGI48_RS00350 - hypothetical protein, at 89,155 to 89,355
_RS00350
HGI48_RS00355: HGI48_RS00355 - argininosuccinate synthase, at 89,475 to 90,824
_RS00355
HGI48_RS00360: HGI48_RS00360 - MarR family transcriptional regulator, at 90,921 to 91,421
_RS00360
HGI48_RS00365: HGI48_RS00365 - DMT family transporter, at 91,780 to 92,673
_RS00365
Position (kb) 89
90
91 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 88.587 kb on + strand, within HGI48_RS00345 at 88.587 kb on + strand, within HGI48_RS00345 at 88.587 kb on + strand, within HGI48_RS00345 at 88.588 kb on - strand, within HGI48_RS00345 at 88.723 kb on - strand, within HGI48_RS00345 at 88.781 kb on - strand, within HGI48_RS00345 at 88.944 kb on + strand, within HGI48_RS00345 at 88.945 kb on - strand at 88.945 kb on - strand, within HGI48_RS00345 at 89.086 kb on + strand at 89.086 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.123 kb on - strand at 89.123 kb on - strand at 89.123 kb on - strand at 89.123 kb on - strand at 89.123 kb on - strand at 89.123 kb on - strand at 89.123 kb on - strand at 89.124 kb on + strand at 89.124 kb on + strand at 89.125 kb on - strand at 89.125 kb on - strand at 89.159 kb on - strand at 89.435 kb on + strand at 89.435 kb on + strand at 89.436 kb on - strand at 89.442 kb on - strand at 89.467 kb on + strand at 89.468 kb on - strand at 89.468 kb on - strand at 89.470 kb on + strand at 89.470 kb on + strand at 89.470 kb on + strand at 89.470 kb on + strand at 89.470 kb on + strand at 89.470 kb on + strand at 89.470 kb on + strand at 89.471 kb on - strand at 89.471 kb on - strand at 89.471 kb on - strand at 89.471 kb on - strand at 89.471 kb on - strand at 89.471 kb on - strand at 89.471 kb on - strand at 89.474 kb on + strand at 89.474 kb on + strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.543 kb on + strand at 89.589 kb on + strand at 89.590 kb on - strand at 89.590 kb on - strand at 89.595 kb on + strand at 89.595 kb on + strand at 89.595 kb on + strand at 89.595 kb on + strand at 89.595 kb on + strand at 89.596 kb on - strand at 89.596 kb on - strand at 89.596 kb on - strand at 89.596 kb on - strand at 89.596 kb on - strand at 89.596 kb on - strand at 89.631 kb on + strand, within HGI48_RS00355 at 89.631 kb on + strand, within HGI48_RS00355 at 89.632 kb on - strand, within HGI48_RS00355 at 89.632 kb on - strand, within HGI48_RS00355 at 89.632 kb on - strand, within HGI48_RS00355 at 89.632 kb on - strand at 89.632 kb on - strand, within HGI48_RS00355 at 89.696 kb on + strand, within HGI48_RS00355 at 89.748 kb on - strand, within HGI48_RS00355 at 89.769 kb on + strand, within HGI48_RS00355 at 89.769 kb on + strand, within HGI48_RS00355 at 89.769 kb on + strand, within HGI48_RS00355 at 89.769 kb on + strand, within HGI48_RS00355 at 89.769 kb on + strand, within HGI48_RS00355 at 89.769 kb on + strand, within HGI48_RS00355 at 89.770 kb on - strand, within HGI48_RS00355 at 89.770 kb on - strand, within HGI48_RS00355 at 89.846 kb on + strand, within HGI48_RS00355 at 89.847 kb on - strand, within HGI48_RS00355 at 89.847 kb on - strand, within HGI48_RS00355 at 89.847 kb on - strand, within HGI48_RS00355 at 89.847 kb on - strand, within HGI48_RS00355 at 89.868 kb on + strand, within HGI48_RS00355 at 89.869 kb on - strand, within HGI48_RS00355 at 89.935 kb on - strand, within HGI48_RS00355 at 89.935 kb on - strand, within HGI48_RS00355 at 89.999 kb on + strand, within HGI48_RS00355 at 90.000 kb on - strand, within HGI48_RS00355 at 90.000 kb on - strand, within HGI48_RS00355 at 90.021 kb on + strand, within HGI48_RS00355 at 90.045 kb on + strand, within HGI48_RS00355 at 90.045 kb on + strand at 90.045 kb on + strand, within HGI48_RS00355 at 90.046 kb on - strand at 90.046 kb on - strand, within HGI48_RS00355 at 90.046 kb on - strand, within HGI48_RS00355 at 90.051 kb on - strand, within HGI48_RS00355 at 90.125 kb on + strand, within HGI48_RS00355 at 90.144 kb on - strand, within HGI48_RS00355 at 90.266 kb on + strand, within HGI48_RS00355 at 90.267 kb on - strand, within HGI48_RS00355 at 90.320 kb on + strand, within HGI48_RS00355 at 90.348 kb on + strand, within HGI48_RS00355 at 90.348 kb on + strand, within HGI48_RS00355 at 90.348 kb on + strand, within HGI48_RS00355 at 90.348 kb on + strand, within HGI48_RS00355 at 90.349 kb on - strand, within HGI48_RS00355 at 90.349 kb on - strand, within HGI48_RS00355 at 90.349 kb on - strand, within HGI48_RS00355 at 90.349 kb on - strand, within HGI48_RS00355 at 90.349 kb on - strand, within HGI48_RS00355 at 90.411 kb on - strand, within HGI48_RS00355 at 90.469 kb on - strand, within HGI48_RS00355 at 90.602 kb on - strand, within HGI48_RS00355 at 90.618 kb on + strand, within HGI48_RS00355 at 90.619 kb on - strand, within HGI48_RS00355 at 90.619 kb on - strand, within HGI48_RS00355 at 90.698 kb on + strand at 90.699 kb on - strand at 90.738 kb on + strand at 90.738 kb on + strand at 90.738 kb on + strand at 90.738 kb on + strand at 90.738 kb on + strand at 90.738 kb on + strand at 90.739 kb on - strand at 90.739 kb on - strand at 90.739 kb on - strand at 90.739 kb on - strand at 90.822 kb on + strand at 90.822 kb on + strand at 90.839 kb on + strand at 90.922 kb on + strand at 90.922 kb on + strand at 90.922 kb on + strand at 91.191 kb on + strand, within HGI48_RS00360 at 91.213 kb on + strand, within HGI48_RS00360 at 91.273 kb on + strand, within HGI48_RS00360 at 91.273 kb on + strand, within HGI48_RS00360 at 91.284 kb on + strand, within HGI48_RS00360 at 91.284 kb on + strand, within HGI48_RS00360 at 91.285 kb on - strand, within HGI48_RS00360 at 91.285 kb on - strand, within HGI48_RS00360 at 91.285 kb on - strand, within HGI48_RS00360 at 91.394 kb on + strand at 91.395 kb on - strand at 91.443 kb on + strand at 91.473 kb on + strand at 91.474 kb on - strand at 91.481 kb on + strand at 91.482 kb on - strand at 91.509 kb on + strand at 91.619 kb on + strand at 91.619 kb on + strand at 91.619 kb on + strand at 91.619 kb on + strand at 91.620 kb on - strand at 91.620 kb on - strand at 91.620 kb on - strand at 91.620 kb on - strand at 91.620 kb on - strand at 91.620 kb on - strand at 91.629 kb on + strand at 91.629 kb on + strand at 91.629 kb on + strand at 91.629 kb on + strand at 91.630 kb on - strand at 91.630 kb on - strand at 91.650 kb on + strand at 91.650 kb on + strand at 91.650 kb on + strand at 91.650 kb on + strand at 91.650 kb on + strand at 91.651 kb on - strand at 91.720 kb on + strand at 91.721 kb on - strand at 91.721 kb on - strand at 91.735 kb on + strand at 91.735 kb on + strand at 91.736 kb on - strand at 91.736 kb on - strand at 91.787 kb on + strand at 91.788 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 88,587 + HGI48_RS00345 0.39 +0.3 88,587 + HGI48_RS00345 0.39 +1.0 88,587 + HGI48_RS00345 0.39 +0.4 88,588 - HGI48_RS00345 0.39 +0.9 88,723 - HGI48_RS00345 0.54 +0.3 88,781 - HGI48_RS00345 0.60 -0.1 88,944 + HGI48_RS00345 0.77 +0.9 88,945 - +1.9 88,945 - HGI48_RS00345 0.77 +0.5 89,086 + +0.2 89,086 + +0.3 89,122 + +1.1 89,122 + +0.3 89,122 + +1.1 89,122 + -1.1 89,122 + -1.3 89,122 + -0.4 89,122 + -0.3 89,122 + -1.8 89,122 + +0.3 89,122 + +2.6 89,122 + -0.1 89,122 + -1.4 89,122 + -1.5 89,122 + +0.9 89,122 + -1.1 89,122 + +0.1 89,123 - +0.3 89,123 - +1.4 89,123 - +0.4 89,123 - -0.4 89,123 - -1.1 89,123 - +0.4 89,123 - +0.1 89,124 + -0.4 89,124 + -1.6 89,125 - -1.3 89,125 - -0.0 89,159 - -1.2 89,435 + -1.7 89,435 + -0.1 89,436 - +0.1 89,442 - -0.7 89,467 + -0.5 89,468 - +0.6 89,468 - -0.1 89,470 + +2.2 89,470 + -0.9 89,470 + +0.1 89,470 + -0.5 89,470 + -0.1 89,470 + +1.0 89,470 + -1.1 89,471 - +0.1 89,471 - -0.7 89,471 - +0.6 89,471 - -1.0 89,471 - -0.4 89,471 - +0.9 89,471 - -1.1 89,474 + -0.7 89,474 + -1.7 89,475 - -0.6 89,475 - +0.9 89,475 - +0.9 89,475 - +0.7 89,475 - -0.3 89,475 - -1.5 89,475 - -0.7 89,475 - +1.1 89,475 - -0.4 89,543 + +0.5 89,589 + +0.1 89,590 - -0.6 89,590 - -0.5 89,595 + -0.4 89,595 + -1.4 89,595 + +1.3 89,595 + -0.6 89,595 + -0.4 89,596 - -0.4 89,596 - -0.4 89,596 - +0.0 89,596 - +1.8 89,596 - -0.1 89,596 - -0.7 89,631 + HGI48_RS00355 0.12 -1.8 89,631 + HGI48_RS00355 0.12 -0.6 89,632 - HGI48_RS00355 0.12 -0.5 89,632 - HGI48_RS00355 0.12 -2.0 89,632 - HGI48_RS00355 0.12 +0.3 89,632 - +1.6 89,632 - HGI48_RS00355 0.12 -1.1 89,696 + HGI48_RS00355 0.16 -0.7 89,748 - HGI48_RS00355 0.20 -0.3 89,769 + HGI48_RS00355 0.22 +0.5 89,769 + HGI48_RS00355 0.22 -1.4 89,769 + HGI48_RS00355 0.22 +0.1 89,769 + HGI48_RS00355 0.22 -1.5 89,769 + HGI48_RS00355 0.22 -1.5 89,769 + HGI48_RS00355 0.22 -0.8 89,770 - HGI48_RS00355 0.22 +0.3 89,770 - HGI48_RS00355 0.22 -2.1 89,846 + HGI48_RS00355 0.27 -0.5 89,847 - HGI48_RS00355 0.28 -1.1 89,847 - HGI48_RS00355 0.28 -0.0 89,847 - HGI48_RS00355 0.28 -0.5 89,847 - HGI48_RS00355 0.28 +0.5 89,868 + HGI48_RS00355 0.29 -0.6 89,869 - HGI48_RS00355 0.29 -0.3 89,935 - HGI48_RS00355 0.34 -1.7 89,935 - HGI48_RS00355 0.34 +0.6 89,999 + HGI48_RS00355 0.39 -2.8 90,000 - HGI48_RS00355 0.39 +1.4 90,000 - HGI48_RS00355 0.39 +1.4 90,021 + HGI48_RS00355 0.40 +0.7 90,045 + HGI48_RS00355 0.42 -2.1 90,045 + +1.4 90,045 + HGI48_RS00355 0.42 +1.5 90,046 - +0.9 90,046 - HGI48_RS00355 0.42 -1.8 90,046 - HGI48_RS00355 0.42 -0.1 90,051 - HGI48_RS00355 0.43 +0.1 90,125 + HGI48_RS00355 0.48 -0.6 90,144 - HGI48_RS00355 0.50 -0.0 90,266 + HGI48_RS00355 0.59 -0.1 90,267 - HGI48_RS00355 0.59 -0.1 90,320 + HGI48_RS00355 0.63 +0.1 90,348 + HGI48_RS00355 0.65 +1.3 90,348 + HGI48_RS00355 0.65 +0.1 90,348 + HGI48_RS00355 0.65 +0.0 90,348 + HGI48_RS00355 0.65 -0.5 90,349 - HGI48_RS00355 0.65 -1.7 90,349 - HGI48_RS00355 0.65 +0.6 90,349 - HGI48_RS00355 0.65 +0.2 90,349 - HGI48_RS00355 0.65 -0.5 90,349 - HGI48_RS00355 0.65 +0.1 90,411 - HGI48_RS00355 0.69 +1.3 90,469 - HGI48_RS00355 0.74 +1.6 90,602 - HGI48_RS00355 0.83 -1.9 90,618 + HGI48_RS00355 0.85 -0.7 90,619 - HGI48_RS00355 0.85 -1.3 90,619 - HGI48_RS00355 0.85 -0.8 90,698 + +0.5 90,699 - +0.0 90,738 + -1.9 90,738 + -0.9 90,738 + -0.3 90,738 + +1.4 90,738 + +0.1 90,738 + -0.3 90,739 - +0.1 90,739 - -0.7 90,739 - +0.4 90,739 - -0.5 90,822 + -1.1 90,822 + -0.1 90,839 + -0.7 90,922 + -0.6 90,922 + -1.5 90,922 + -1.7 91,191 + HGI48_RS00360 0.54 +1.1 91,213 + HGI48_RS00360 0.58 +1.2 91,273 + HGI48_RS00360 0.70 -1.6 91,273 + HGI48_RS00360 0.70 -1.9 91,284 + HGI48_RS00360 0.72 +0.1 91,284 + HGI48_RS00360 0.72 -0.5 91,285 - HGI48_RS00360 0.73 +0.9 91,285 - HGI48_RS00360 0.73 -0.1 91,285 - HGI48_RS00360 0.73 +1.4 91,394 + -1.5 91,395 - -0.7 91,443 + +1.3 91,473 + -1.9 91,474 - -0.0 91,481 + -1.3 91,482 - +0.4 91,509 + +0.2 91,619 + +0.4 91,619 + +1.6 91,619 + -1.1 91,619 + +1.4 91,620 - -1.9 91,620 - -0.8 91,620 - +1.0 91,620 - +1.4 91,620 - -0.7 91,620 - +1.2 91,629 + -0.5 91,629 + -0.0 91,629 + +0.0 91,629 + -1.5 91,630 - -0.5 91,630 - -0.1 91,650 + +0.9 91,650 + -0.4 91,650 + -1.1 91,650 + -0.6 91,650 + -0.1 91,651 - +0.1 91,720 + +1.9 91,721 - +1.2 91,721 - -0.1 91,735 + -0.5 91,735 + -1.6 91,736 - +0.2 91,736 - +0.1 91,787 + -0.6 91,788 - -2.1
Or see this region's nucleotide sequence