Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00285 and HGI48_RS00290 are separated by 272 nucleotides HGI48_RS00290 and HGI48_RS00295 are separated by 119 nucleotides HGI48_RS00295 and HGI48_RS00300 are separated by 52 nucleotides
HGI48_RS00285: HGI48_RS00285 - superoxide dismutase [Mn], at 74,371 to 74,997
_RS00285
HGI48_RS00290: HGI48_RS00290 - formate dehydrogenase accessory sulfurtransferase FdhD, at 75,270 to 76,124
_RS00290
HGI48_RS00295: HGI48_RS00295 - hypothetical protein, at 76,244 to 76,519
_RS00295
HGI48_RS00300: HGI48_RS00300 - aldehyde dehydrogenase, at 76,572 to 78,110
_RS00300
Position (kb) 75
76
77 Strain fitness (log2 ratio) -2
-1
0
1
2 at 74.303 kb on + strand at 74.305 kb on + strand at 74.306 kb on - strand at 74.306 kb on - strand at 74.347 kb on + strand at 74.368 kb on + strand at 74.368 kb on + strand at 74.373 kb on - strand at 75.042 kb on + strand at 75.043 kb on - strand at 75.043 kb on - strand at 75.127 kb on + strand at 75.128 kb on - strand at 75.129 kb on + strand at 75.129 kb on + strand at 75.130 kb on - strand at 75.130 kb on - strand at 75.133 kb on + strand at 75.133 kb on + strand at 75.134 kb on - strand at 75.137 kb on + strand at 75.137 kb on + strand at 75.137 kb on + strand at 75.138 kb on - strand at 75.248 kb on + strand at 75.248 kb on + strand at 75.248 kb on + strand at 75.248 kb on + strand at 75.249 kb on - strand at 75.249 kb on - strand at 75.249 kb on - strand at 75.249 kb on - strand at 75.253 kb on + strand at 75.253 kb on + strand at 75.254 kb on - strand at 75.298 kb on + strand at 75.298 kb on + strand at 75.298 kb on + strand at 75.298 kb on + strand at 75.298 kb on + strand at 75.298 kb on + strand at 75.298 kb on + strand at 75.298 kb on + strand at 75.298 kb on + strand at 75.298 kb on + strand at 75.298 kb on + strand at 75.298 kb on + strand at 75.298 kb on + strand at 75.298 kb on + strand at 75.298 kb on + strand at 75.298 kb on + strand at 75.298 kb on + strand at 75.298 kb on + strand at 75.299 kb on - strand at 75.299 kb on - strand at 75.299 kb on - strand at 75.299 kb on - strand at 75.299 kb on - strand at 75.299 kb on - strand at 75.299 kb on - strand at 75.299 kb on - strand at 75.299 kb on - strand at 75.299 kb on - strand at 75.299 kb on - strand at 75.439 kb on + strand, within HGI48_RS00290 at 75.798 kb on + strand, within HGI48_RS00290 at 75.825 kb on - strand, within HGI48_RS00290 at 75.828 kb on + strand, within HGI48_RS00290 at 75.828 kb on + strand, within HGI48_RS00290 at 75.829 kb on - strand at 75.829 kb on - strand, within HGI48_RS00290 at 75.850 kb on + strand, within HGI48_RS00290 at 75.850 kb on + strand, within HGI48_RS00290 at 75.850 kb on + strand, within HGI48_RS00290 at 75.850 kb on + strand, within HGI48_RS00290 at 75.850 kb on + strand, within HGI48_RS00290 at 75.850 kb on + strand, within HGI48_RS00290 at 75.850 kb on + strand, within HGI48_RS00290 at 75.851 kb on - strand at 75.851 kb on - strand, within HGI48_RS00290 at 75.851 kb on - strand, within HGI48_RS00290 at 75.851 kb on - strand, within HGI48_RS00290 at 75.939 kb on + strand, within HGI48_RS00290 at 75.939 kb on + strand, within HGI48_RS00290 at 75.939 kb on + strand, within HGI48_RS00290 at 75.939 kb on + strand, within HGI48_RS00290 at 75.940 kb on - strand, within HGI48_RS00290 at 75.940 kb on - strand, within HGI48_RS00290 at 75.940 kb on - strand, within HGI48_RS00290 at 75.940 kb on - strand, within HGI48_RS00290 at 75.940 kb on - strand, within HGI48_RS00290 at 75.940 kb on - strand, within HGI48_RS00290 at 75.940 kb on - strand, within HGI48_RS00290 at 75.940 kb on - strand, within HGI48_RS00290 at 75.950 kb on + strand, within HGI48_RS00290 at 75.950 kb on + strand, within HGI48_RS00290 at 75.950 kb on + strand, within HGI48_RS00290 at 75.950 kb on + strand, within HGI48_RS00290 at 75.950 kb on + strand, within HGI48_RS00290 at 75.951 kb on - strand, within HGI48_RS00290 at 75.951 kb on - strand, within HGI48_RS00290 at 75.958 kb on + strand, within HGI48_RS00290 at 75.958 kb on + strand, within HGI48_RS00290 at 75.958 kb on + strand, within HGI48_RS00290 at 75.959 kb on - strand at 75.959 kb on - strand, within HGI48_RS00290 at 75.959 kb on - strand, within HGI48_RS00290 at 75.959 kb on - strand, within HGI48_RS00290 at 75.959 kb on - strand, within HGI48_RS00290 at 76.112 kb on + strand at 76.112 kb on + strand at 76.112 kb on + strand at 76.113 kb on - strand at 76.113 kb on - strand at 76.113 kb on - strand at 76.144 kb on + strand at 76.144 kb on + strand at 76.144 kb on + strand at 76.245 kb on + strand at 76.245 kb on + strand at 76.246 kb on - strand at 76.317 kb on + strand, within HGI48_RS00295 at 76.336 kb on + strand, within HGI48_RS00295 at 76.337 kb on - strand, within HGI48_RS00295 at 76.391 kb on - strand at 76.409 kb on - strand, within HGI48_RS00295 at 76.410 kb on + strand, within HGI48_RS00295 at 76.417 kb on + strand, within HGI48_RS00295 at 76.418 kb on - strand, within HGI48_RS00295 at 76.442 kb on - strand, within HGI48_RS00295 at 76.567 kb on + strand at 76.567 kb on + strand at 76.568 kb on - strand at 76.568 kb on - strand at 76.568 kb on - strand at 76.568 kb on - strand at 76.578 kb on - strand at 76.614 kb on + strand at 76.615 kb on - strand at 76.615 kb on - strand at 76.692 kb on + strand at 76.692 kb on + strand at 76.692 kb on + strand at 76.692 kb on + strand at 76.693 kb on - strand at 76.695 kb on + strand at 76.695 kb on + strand at 76.695 kb on + strand at 76.695 kb on + strand at 76.695 kb on + strand at 76.695 kb on + strand at 76.695 kb on + strand at 76.696 kb on - strand at 76.696 kb on - strand at 76.982 kb on + strand, within HGI48_RS00300 at 76.983 kb on - strand, within HGI48_RS00300 at 77.072 kb on + strand, within HGI48_RS00300 at 77.072 kb on + strand, within HGI48_RS00300 at 77.073 kb on - strand, within HGI48_RS00300
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 74,303 + -2.6 74,305 + -0.4 74,306 - -1.5 74,306 - -1.5 74,347 + +1.4 74,368 + +1.4 74,368 + +1.8 74,373 - -1.6 75,042 + -0.5 75,043 - +0.7 75,043 - -1.0 75,127 + -1.5 75,128 - -0.0 75,129 + +0.7 75,129 + -0.1 75,130 - +1.2 75,130 - -0.1 75,133 + +1.4 75,133 + -0.1 75,134 - -0.6 75,137 + +1.4 75,137 + -0.7 75,137 + -0.3 75,138 - +0.4 75,248 + +0.3 75,248 + -1.7 75,248 + +1.1 75,248 + +0.3 75,249 - -2.7 75,249 - -0.1 75,249 - +0.7 75,249 - +0.4 75,253 + +0.5 75,253 + +2.4 75,254 - +0.2 75,298 + -0.7 75,298 + +0.7 75,298 + +0.5 75,298 + +0.5 75,298 + -0.1 75,298 + -1.0 75,298 + -1.0 75,298 + -1.5 75,298 + +0.2 75,298 + -0.4 75,298 + -0.8 75,298 + +0.1 75,298 + +0.5 75,298 + -0.5 75,298 + -0.3 75,298 + -0.7 75,298 + +0.4 75,298 + +0.4 75,299 - +0.4 75,299 - -0.1 75,299 - -0.1 75,299 - +0.5 75,299 - +0.4 75,299 - +0.1 75,299 - -0.1 75,299 - -1.0 75,299 - +0.6 75,299 - +0.1 75,299 - -0.8 75,439 + HGI48_RS00290 0.20 +0.4 75,798 + HGI48_RS00290 0.62 +0.4 75,825 - HGI48_RS00290 0.65 -0.9 75,828 + HGI48_RS00290 0.65 +0.9 75,828 + HGI48_RS00290 0.65 +0.4 75,829 - +1.3 75,829 - HGI48_RS00290 0.65 +0.5 75,850 + HGI48_RS00290 0.68 -1.5 75,850 + HGI48_RS00290 0.68 -0.1 75,850 + HGI48_RS00290 0.68 -1.1 75,850 + HGI48_RS00290 0.68 +0.5 75,850 + HGI48_RS00290 0.68 -1.3 75,850 + HGI48_RS00290 0.68 +0.4 75,850 + HGI48_RS00290 0.68 -0.7 75,851 - -0.1 75,851 - HGI48_RS00290 0.68 -0.2 75,851 - HGI48_RS00290 0.68 +0.1 75,851 - HGI48_RS00290 0.68 -0.6 75,939 + HGI48_RS00290 0.78 +0.2 75,939 + HGI48_RS00290 0.78 +0.6 75,939 + HGI48_RS00290 0.78 -0.4 75,939 + HGI48_RS00290 0.78 -0.1 75,940 - HGI48_RS00290 0.78 +0.4 75,940 - HGI48_RS00290 0.78 -0.0 75,940 - HGI48_RS00290 0.78 -1.3 75,940 - HGI48_RS00290 0.78 -1.7 75,940 - HGI48_RS00290 0.78 -0.1 75,940 - HGI48_RS00290 0.78 -0.1 75,940 - HGI48_RS00290 0.78 +0.4 75,940 - HGI48_RS00290 0.78 -0.6 75,950 + HGI48_RS00290 0.80 -0.5 75,950 + HGI48_RS00290 0.80 +0.5 75,950 + HGI48_RS00290 0.80 +0.2 75,950 + HGI48_RS00290 0.80 -0.6 75,950 + HGI48_RS00290 0.80 +0.8 75,951 - HGI48_RS00290 0.80 -0.9 75,951 - HGI48_RS00290 0.80 -0.3 75,958 + HGI48_RS00290 0.80 -0.6 75,958 + HGI48_RS00290 0.80 -1.5 75,958 + HGI48_RS00290 0.80 -0.3 75,959 - +2.3 75,959 - HGI48_RS00290 0.81 -0.7 75,959 - HGI48_RS00290 0.81 -0.7 75,959 - HGI48_RS00290 0.81 -0.9 75,959 - HGI48_RS00290 0.81 -0.0 76,112 + +0.2 76,112 + -0.5 76,112 + -1.0 76,113 - -0.6 76,113 - +0.9 76,113 - -0.1 76,144 + -0.2 76,144 + +0.6 76,144 + -0.1 76,245 + -0.3 76,245 + -0.5 76,246 - -1.0 76,317 + HGI48_RS00295 0.26 +1.5 76,336 + HGI48_RS00295 0.33 +0.4 76,337 - HGI48_RS00295 0.34 -0.1 76,391 - +0.3 76,409 - HGI48_RS00295 0.60 -1.5 76,410 + HGI48_RS00295 0.60 +1.9 76,417 + HGI48_RS00295 0.63 -0.1 76,418 - HGI48_RS00295 0.63 -0.5 76,442 - HGI48_RS00295 0.72 +0.3 76,567 + -0.2 76,567 + +0.9 76,568 - +0.9 76,568 - -1.1 76,568 - -0.4 76,568 - -1.3 76,578 - -0.3 76,614 + +0.0 76,615 - -0.1 76,615 - +0.1 76,692 + +1.1 76,692 + -1.0 76,692 + +0.3 76,692 + +0.2 76,693 - +0.9 76,695 + -1.5 76,695 + +0.7 76,695 + +0.3 76,695 + -0.6 76,695 + +1.0 76,695 + +1.9 76,695 + +0.0 76,696 - -0.6 76,696 - +0.9 76,982 + HGI48_RS00300 0.27 +0.2 76,983 - HGI48_RS00300 0.27 -1.7 77,072 + HGI48_RS00300 0.32 -0.3 77,072 + HGI48_RS00300 0.32 -1.5 77,073 - HGI48_RS00300 0.33 +0.5
Or see this region's nucleotide sequence