Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00110

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00105 and HGI48_RS00110 are separated by 53 nucleotidesHGI48_RS00110 and HGI48_RS00115 are separated by 590 nucleotides HGI48_RS00105: HGI48_RS00105 - oxalyl-CoA decarboxylase, at 27,319 to 29,064 _RS00105 HGI48_RS00110: HGI48_RS00110 - OFA family MFS transporter, at 29,118 to 30,425 _RS00110 HGI48_RS00115: HGI48_RS00115 - LysR family transcriptional regulator, at 31,016 to 31,912 _RS00115 Position (kb) 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 28.120 kb on - strand, within HGI48_RS00105at 28.225 kb on + strandat 28.225 kb on + strandat 28.225 kb on + strand, within HGI48_RS00105at 28.225 kb on + strand, within HGI48_RS00105at 28.225 kb on + strand, within HGI48_RS00105at 28.225 kb on + strand, within HGI48_RS00105at 28.226 kb on - strand, within HGI48_RS00105at 28.226 kb on - strand, within HGI48_RS00105at 28.226 kb on - strand, within HGI48_RS00105at 28.226 kb on - strand, within HGI48_RS00105at 28.226 kb on - strand, within HGI48_RS00105at 28.229 kb on + strand, within HGI48_RS00105at 28.229 kb on + strand, within HGI48_RS00105at 28.229 kb on + strand, within HGI48_RS00105at 28.229 kb on + strandat 28.229 kb on + strand, within HGI48_RS00105at 28.229 kb on + strand, within HGI48_RS00105at 28.229 kb on + strand, within HGI48_RS00105at 28.230 kb on - strandat 28.230 kb on - strand, within HGI48_RS00105at 28.230 kb on - strand, within HGI48_RS00105at 28.230 kb on - strand, within HGI48_RS00105at 28.301 kb on + strand, within HGI48_RS00105at 28.355 kb on + strand, within HGI48_RS00105at 28.429 kb on - strand, within HGI48_RS00105at 28.429 kb on - strand, within HGI48_RS00105at 28.429 kb on - strand, within HGI48_RS00105at 28.462 kb on + strand, within HGI48_RS00105at 28.462 kb on + strand, within HGI48_RS00105at 28.462 kb on + strand, within HGI48_RS00105at 28.463 kb on - strand, within HGI48_RS00105at 28.463 kb on - strand, within HGI48_RS00105at 28.465 kb on + strandat 28.465 kb on + strand, within HGI48_RS00105at 28.465 kb on + strand, within HGI48_RS00105at 28.465 kb on + strand, within HGI48_RS00105at 28.465 kb on + strand, within HGI48_RS00105at 28.465 kb on + strand, within HGI48_RS00105at 28.465 kb on + strand, within HGI48_RS00105at 28.466 kb on - strand, within HGI48_RS00105at 28.466 kb on - strand, within HGI48_RS00105at 28.466 kb on - strand, within HGI48_RS00105at 28.475 kb on - strand, within HGI48_RS00105at 28.475 kb on - strand, within HGI48_RS00105at 28.482 kb on + strandat 28.539 kb on - strand, within HGI48_RS00105at 28.539 kb on - strand, within HGI48_RS00105at 28.562 kb on - strand, within HGI48_RS00105at 28.632 kb on + strand, within HGI48_RS00105at 28.673 kb on + strand, within HGI48_RS00105at 28.743 kb on + strand, within HGI48_RS00105at 28.743 kb on + strand, within HGI48_RS00105at 28.744 kb on - strand, within HGI48_RS00105at 28.744 kb on - strand, within HGI48_RS00105at 28.879 kb on + strand, within HGI48_RS00105at 28.879 kb on + strand, within HGI48_RS00105at 28.879 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.881 kb on + strand, within HGI48_RS00105at 28.882 kb on - strand, within HGI48_RS00105at 28.882 kb on - strand, within HGI48_RS00105at 28.882 kb on - strand, within HGI48_RS00105at 28.882 kb on - strand, within HGI48_RS00105at 29.085 kb on + strandat 29.093 kb on + strandat 29.245 kb on + strandat 29.245 kb on + strandat 29.245 kb on + strandat 29.246 kb on - strandat 29.351 kb on - strand, within HGI48_RS00110at 29.384 kb on - strand, within HGI48_RS00110at 29.494 kb on + strand, within HGI48_RS00110at 29.494 kb on + strand, within HGI48_RS00110at 29.495 kb on - strand, within HGI48_RS00110at 29.495 kb on - strand, within HGI48_RS00110at 29.570 kb on + strand, within HGI48_RS00110at 29.570 kb on + strand, within HGI48_RS00110at 29.571 kb on - strand, within HGI48_RS00110at 29.612 kb on + strandat 29.652 kb on - strand, within HGI48_RS00110at 29.673 kb on + strand, within HGI48_RS00110at 29.715 kb on - strand, within HGI48_RS00110at 29.895 kb on - strand, within HGI48_RS00110at 29.918 kb on + strand, within HGI48_RS00110at 30.021 kb on - strand, within HGI48_RS00110at 30.023 kb on + strand, within HGI48_RS00110at 30.023 kb on + strand, within HGI48_RS00110at 30.023 kb on + strand, within HGI48_RS00110at 30.037 kb on + strand, within HGI48_RS00110at 30.038 kb on - strand, within HGI48_RS00110at 30.038 kb on - strand, within HGI48_RS00110at 30.065 kb on + strand, within HGI48_RS00110at 30.131 kb on + strandat 30.132 kb on - strand, within HGI48_RS00110at 30.311 kb on - strandat 30.379 kb on - strandat 30.431 kb on + strandat 30.431 kb on + strandat 30.458 kb on + strandat 30.649 kb on + strandat 31.031 kb on - strandat 31.048 kb on - strandat 31.048 kb on - strandat 31.170 kb on + strand, within HGI48_RS00115at 31.171 kb on - strand, within HGI48_RS00115at 31.242 kb on + strand, within HGI48_RS00115at 31.242 kb on + strand, within HGI48_RS00115at 31.270 kb on + strand, within HGI48_RS00115at 31.270 kb on + strand, within HGI48_RS00115at 31.271 kb on - strand, within HGI48_RS00115at 31.271 kb on - strand, within HGI48_RS00115at 31.271 kb on - strand, within HGI48_RS00115at 31.380 kb on - strand, within HGI48_RS00115at 31.399 kb on - strand, within HGI48_RS00115

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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28,120 - HGI48_RS00105 0.46 -0.3
28,225 + -0.1
28,225 + +1.9
28,225 + HGI48_RS00105 0.52 +0.7
28,225 + HGI48_RS00105 0.52 -0.6
28,225 + HGI48_RS00105 0.52 +1.4
28,225 + HGI48_RS00105 0.52 -0.1
28,226 - HGI48_RS00105 0.52 -0.3
28,226 - HGI48_RS00105 0.52 +0.9
28,226 - HGI48_RS00105 0.52 -0.4
28,226 - HGI48_RS00105 0.52 +0.1
28,226 - HGI48_RS00105 0.52 +0.0
28,229 + HGI48_RS00105 0.52 -0.1
28,229 + HGI48_RS00105 0.52 -0.8
28,229 + HGI48_RS00105 0.52 -1.5
28,229 + +0.9
28,229 + HGI48_RS00105 0.52 -0.1
28,229 + HGI48_RS00105 0.52 -0.3
28,229 + HGI48_RS00105 0.52 -0.0
28,230 - +0.3
28,230 - HGI48_RS00105 0.52 +0.1
28,230 - HGI48_RS00105 0.52 -0.3
28,230 - HGI48_RS00105 0.52 +0.2
28,301 + HGI48_RS00105 0.56 -1.5
28,355 + HGI48_RS00105 0.59 +0.4
28,429 - HGI48_RS00105 0.64 -1.4
28,429 - HGI48_RS00105 0.64 -2.6
28,429 - HGI48_RS00105 0.64 +0.5
28,462 + HGI48_RS00105 0.65 -2.9
28,462 + HGI48_RS00105 0.65 +0.5
28,462 + HGI48_RS00105 0.65 +0.6
28,463 - HGI48_RS00105 0.66 -0.3
28,463 - HGI48_RS00105 0.66 -0.4
28,465 + +0.9
28,465 + HGI48_RS00105 0.66 +0.5
28,465 + HGI48_RS00105 0.66 -1.6
28,465 + HGI48_RS00105 0.66 +0.4
28,465 + HGI48_RS00105 0.66 -0.3
28,465 + HGI48_RS00105 0.66 -1.6
28,465 + HGI48_RS00105 0.66 +2.0
28,466 - HGI48_RS00105 0.66 -2.3
28,466 - HGI48_RS00105 0.66 -1.3
28,466 - HGI48_RS00105 0.66 -2.5
28,475 - HGI48_RS00105 0.66 +0.3
28,475 - HGI48_RS00105 0.66 -0.7
28,482 + +1.9
28,539 - HGI48_RS00105 0.70 +0.1
28,539 - HGI48_RS00105 0.70 -0.7
28,562 - HGI48_RS00105 0.71 -0.9
28,632 + HGI48_RS00105 0.75 -2.1
28,673 + HGI48_RS00105 0.78 +0.4
28,743 + HGI48_RS00105 0.82 +0.2
28,743 + HGI48_RS00105 0.82 -0.1
28,744 - HGI48_RS00105 0.82 -1.1
28,744 - HGI48_RS00105 0.82 -0.9
28,879 + HGI48_RS00105 0.89 -0.1
28,879 + HGI48_RS00105 0.89 +1.0
28,879 + HGI48_RS00105 0.89 +0.1
28,881 + HGI48_RS00105 0.89 -0.4
28,881 + HGI48_RS00105 0.89 -0.2
28,881 + HGI48_RS00105 0.89 -0.7
28,881 + HGI48_RS00105 0.89 -0.1
28,881 + HGI48_RS00105 0.89 +0.7
28,881 + HGI48_RS00105 0.89 +0.1
28,881 + HGI48_RS00105 0.89 -0.4
28,882 - HGI48_RS00105 0.90 +1.1
28,882 - HGI48_RS00105 0.90 +0.5
28,882 - HGI48_RS00105 0.90 +1.7
28,882 - HGI48_RS00105 0.90 -0.4
29,085 + -0.4
29,093 + +0.4
29,245 + +2.2
29,245 + +0.7
29,245 + -0.1
29,246 - -1.1
29,351 - HGI48_RS00110 0.18 +0.4
29,384 - HGI48_RS00110 0.20 -1.1
29,494 + HGI48_RS00110 0.29 -0.1
29,494 + HGI48_RS00110 0.29 +0.9
29,495 - HGI48_RS00110 0.29 -0.8
29,495 - HGI48_RS00110 0.29 -0.7
29,570 + HGI48_RS00110 0.35 +0.9
29,570 + HGI48_RS00110 0.35 +0.4
29,571 - HGI48_RS00110 0.35 +1.3
29,612 + +3.0
29,652 - HGI48_RS00110 0.41 -0.3
29,673 + HGI48_RS00110 0.42 +1.2
29,715 - HGI48_RS00110 0.46 -0.6
29,895 - HGI48_RS00110 0.59 -1.5
29,918 + HGI48_RS00110 0.61 -0.3
30,021 - HGI48_RS00110 0.69 -0.6
30,023 + HGI48_RS00110 0.69 +0.8
30,023 + HGI48_RS00110 0.69 +0.9
30,023 + HGI48_RS00110 0.69 +0.6
30,037 + HGI48_RS00110 0.70 +0.1
30,038 - HGI48_RS00110 0.70 -0.1
30,038 - HGI48_RS00110 0.70 +0.7
30,065 + HGI48_RS00110 0.72 -0.5
30,131 + +2.4
30,132 - HGI48_RS00110 0.78 -0.6
30,311 - -0.7
30,379 - +1.3
30,431 + +0.9
30,431 + -1.1
30,458 + +0.6
30,649 + +1.2
31,031 - +0.9
31,048 - +1.9
31,048 - +0.1
31,170 + HGI48_RS00115 0.17 -1.0
31,171 - HGI48_RS00115 0.17 -1.5
31,242 + HGI48_RS00115 0.25 -0.9
31,242 + HGI48_RS00115 0.25 -0.1
31,270 + HGI48_RS00115 0.28 +0.3
31,270 + HGI48_RS00115 0.28 +0.9
31,271 - HGI48_RS00115 0.28 -1.8
31,271 - HGI48_RS00115 0.28 +1.1
31,271 - HGI48_RS00115 0.28 -0.4
31,380 - HGI48_RS00115 0.41 -1.7
31,399 - HGI48_RS00115 0.43 +0.1

Or see this region's nucleotide sequence