Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00090 and HGI48_RS00095 are separated by 93 nucleotides HGI48_RS00095 and HGI48_RS00100 are separated by 5 nucleotides HGI48_RS00100 and HGI48_RS00105 are separated by 38 nucleotides
HGI48_RS00090: HGI48_RS00090 - formyl-CoA transferase, at 24,219 to 25,466
_RS00090
HGI48_RS00095: HGI48_RS00095 - PAS domain-containing protein, at 25,560 to 25,997
_RS00095
HGI48_RS00100: HGI48_RS00100 - formyl-CoA transferase, at 26,003 to 27,280
_RS00100
HGI48_RS00105: HGI48_RS00105 - oxalyl-CoA decarboxylase, at 27,319 to 29,064
_RS00105
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 25.054 kb on + strand, within HGI48_RS00090 at 25.133 kb on + strand, within HGI48_RS00090 at 25.133 kb on + strand, within HGI48_RS00090 at 25.133 kb on + strand, within HGI48_RS00090 at 25.134 kb on - strand at 25.134 kb on - strand, within HGI48_RS00090 at 25.134 kb on - strand, within HGI48_RS00090 at 25.227 kb on + strand, within HGI48_RS00090 at 25.228 kb on - strand, within HGI48_RS00090 at 25.228 kb on - strand, within HGI48_RS00090 at 25.286 kb on + strand, within HGI48_RS00090 at 25.286 kb on + strand at 25.287 kb on - strand, within HGI48_RS00090 at 25.287 kb on - strand, within HGI48_RS00090 at 25.303 kb on - strand, within HGI48_RS00090 at 25.303 kb on - strand, within HGI48_RS00090 at 25.303 kb on - strand, within HGI48_RS00090 at 25.303 kb on - strand, within HGI48_RS00090 at 25.320 kb on + strand, within HGI48_RS00090 at 25.321 kb on - strand, within HGI48_RS00090 at 25.364 kb on + strand at 25.364 kb on + strand at 25.365 kb on - strand at 25.365 kb on - strand at 25.393 kb on - strand at 25.401 kb on - strand at 25.419 kb on + strand at 25.419 kb on + strand at 25.419 kb on + strand at 25.419 kb on + strand at 25.420 kb on - strand at 25.420 kb on - strand at 25.420 kb on - strand at 25.420 kb on - strand at 25.420 kb on - strand at 25.427 kb on + strand at 25.437 kb on - strand at 25.452 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.494 kb on - strand at 25.494 kb on - strand at 25.494 kb on - strand at 25.494 kb on - strand at 25.494 kb on - strand at 25.494 kb on - strand at 25.494 kb on - strand at 25.494 kb on - strand at 25.495 kb on + strand at 25.495 kb on + strand at 25.495 kb on + strand at 25.495 kb on + strand at 25.495 kb on + strand at 25.495 kb on + strand at 25.495 kb on + strand at 25.496 kb on - strand at 25.496 kb on - strand at 25.496 kb on - strand at 25.496 kb on - strand at 25.496 kb on - strand at 25.528 kb on + strand at 25.528 kb on + strand at 25.529 kb on - strand at 25.529 kb on - strand at 25.529 kb on - strand at 25.547 kb on - strand at 25.946 kb on + strand, within HGI48_RS00095 at 25.946 kb on + strand at 25.946 kb on + strand, within HGI48_RS00095 at 25.947 kb on - strand, within HGI48_RS00095 at 25.971 kb on + strand at 25.971 kb on + strand at 25.972 kb on - strand at 25.983 kb on + strand at 25.983 kb on + strand at 25.983 kb on + strand at 25.984 kb on - strand at 25.984 kb on - strand at 25.984 kb on - strand at 26.154 kb on + strand, within HGI48_RS00100 at 26.267 kb on - strand, within HGI48_RS00100 at 26.274 kb on + strand, within HGI48_RS00100 at 26.274 kb on + strand, within HGI48_RS00100 at 26.274 kb on + strand, within HGI48_RS00100 at 26.274 kb on + strand, within HGI48_RS00100 at 26.275 kb on - strand, within HGI48_RS00100 at 26.289 kb on + strand, within HGI48_RS00100 at 26.289 kb on + strand, within HGI48_RS00100 at 26.289 kb on + strand at 26.290 kb on - strand, within HGI48_RS00100 at 26.374 kb on + strand, within HGI48_RS00100 at 26.374 kb on + strand, within HGI48_RS00100 at 26.374 kb on + strand, within HGI48_RS00100 at 26.375 kb on - strand, within HGI48_RS00100 at 26.376 kb on + strand, within HGI48_RS00100 at 26.376 kb on + strand, within HGI48_RS00100 at 26.376 kb on + strand, within HGI48_RS00100 at 26.376 kb on + strand, within HGI48_RS00100 at 26.376 kb on + strand, within HGI48_RS00100 at 26.377 kb on - strand, within HGI48_RS00100 at 26.409 kb on - strand, within HGI48_RS00100 at 26.449 kb on + strand at 26.454 kb on + strand at 26.454 kb on + strand, within HGI48_RS00100 at 26.454 kb on + strand at 26.454 kb on + strand, within HGI48_RS00100 at 26.455 kb on - strand at 26.458 kb on + strand, within HGI48_RS00100 at 26.458 kb on + strand, within HGI48_RS00100 at 26.459 kb on - strand, within HGI48_RS00100 at 26.459 kb on - strand, within HGI48_RS00100 at 26.459 kb on - strand, within HGI48_RS00100 at 26.460 kb on + strand, within HGI48_RS00100 at 26.460 kb on + strand, within HGI48_RS00100 at 26.460 kb on + strand, within HGI48_RS00100 at 26.460 kb on + strand, within HGI48_RS00100 at 26.460 kb on + strand at 26.460 kb on + strand, within HGI48_RS00100 at 26.460 kb on + strand, within HGI48_RS00100 at 26.460 kb on + strand, within HGI48_RS00100 at 26.460 kb on + strand, within HGI48_RS00100 at 26.460 kb on + strand, within HGI48_RS00100 at 26.460 kb on + strand, within HGI48_RS00100 at 26.461 kb on - strand, within HGI48_RS00100 at 26.461 kb on - strand, within HGI48_RS00100 at 26.461 kb on - strand, within HGI48_RS00100 at 26.461 kb on - strand, within HGI48_RS00100 at 26.461 kb on - strand at 26.461 kb on - strand, within HGI48_RS00100 at 26.461 kb on - strand, within HGI48_RS00100 at 26.461 kb on - strand, within HGI48_RS00100 at 26.461 kb on - strand, within HGI48_RS00100 at 26.571 kb on + strand, within HGI48_RS00100 at 26.662 kb on + strand, within HGI48_RS00100 at 26.663 kb on - strand, within HGI48_RS00100 at 26.709 kb on + strand, within HGI48_RS00100 at 26.709 kb on + strand, within HGI48_RS00100 at 26.709 kb on + strand, within HGI48_RS00100 at 26.709 kb on + strand, within HGI48_RS00100 at 26.709 kb on + strand, within HGI48_RS00100 at 26.710 kb on - strand, within HGI48_RS00100 at 26.710 kb on - strand, within HGI48_RS00100 at 26.710 kb on - strand, within HGI48_RS00100 at 26.710 kb on - strand, within HGI48_RS00100 at 26.710 kb on - strand, within HGI48_RS00100 at 26.710 kb on - strand, within HGI48_RS00100 at 26.710 kb on - strand, within HGI48_RS00100 at 26.853 kb on + strand, within HGI48_RS00100 at 26.948 kb on - strand, within HGI48_RS00100 at 27.010 kb on + strand, within HGI48_RS00100 at 27.011 kb on - strand, within HGI48_RS00100 at 27.023 kb on + strand, within HGI48_RS00100 at 27.023 kb on + strand, within HGI48_RS00100 at 27.024 kb on - strand, within HGI48_RS00100 at 27.024 kb on - strand, within HGI48_RS00100 at 27.024 kb on - strand, within HGI48_RS00100 at 27.024 kb on - strand, within HGI48_RS00100 at 27.024 kb on - strand, within HGI48_RS00100 at 27.024 kb on - strand, within HGI48_RS00100 at 27.024 kb on - strand, within HGI48_RS00100 at 27.093 kb on + strand, within HGI48_RS00100 at 27.093 kb on + strand, within HGI48_RS00100 at 27.093 kb on + strand, within HGI48_RS00100 at 27.093 kb on + strand, within HGI48_RS00100 at 27.094 kb on - strand, within HGI48_RS00100 at 27.094 kb on - strand, within HGI48_RS00100 at 27.122 kb on + strand, within HGI48_RS00100 at 27.123 kb on - strand, within HGI48_RS00100 at 27.170 kb on + strand at 27.170 kb on + strand at 27.171 kb on - strand at 27.202 kb on + strand at 27.202 kb on + strand at 27.202 kb on + strand at 27.203 kb on - strand at 27.203 kb on - strand at 27.203 kb on - strand at 27.203 kb on - strand at 27.581 kb on + strand, within HGI48_RS00105 at 27.582 kb on - strand, within HGI48_RS00105 at 27.582 kb on - strand, within HGI48_RS00105 at 27.582 kb on - strand, within HGI48_RS00105 at 27.788 kb on + strand, within HGI48_RS00105 at 27.788 kb on + strand, within HGI48_RS00105 at 27.788 kb on + strand, within HGI48_RS00105 at 27.788 kb on + strand, within HGI48_RS00105 at 27.788 kb on + strand, within HGI48_RS00105 at 27.788 kb on + strand, within HGI48_RS00105 at 27.789 kb on - strand, within HGI48_RS00105 at 27.789 kb on - strand, within HGI48_RS00105 at 27.789 kb on - strand, within HGI48_RS00105 at 27.789 kb on - strand, within HGI48_RS00105 at 27.789 kb on - strand at 28.120 kb on - strand, within HGI48_RS00105 at 28.225 kb on + strand at 28.225 kb on + strand at 28.225 kb on + strand, within HGI48_RS00105 at 28.225 kb on + strand, within HGI48_RS00105 at 28.225 kb on + strand, within HGI48_RS00105 at 28.225 kb on + strand, within HGI48_RS00105 at 28.226 kb on - strand, within HGI48_RS00105 at 28.226 kb on - strand, within HGI48_RS00105 at 28.226 kb on - strand, within HGI48_RS00105 at 28.226 kb on - strand, within HGI48_RS00105 at 28.226 kb on - strand, within HGI48_RS00105 at 28.229 kb on + strand, within HGI48_RS00105 at 28.229 kb on + strand, within HGI48_RS00105 at 28.229 kb on + strand, within HGI48_RS00105 at 28.229 kb on + strand at 28.229 kb on + strand, within HGI48_RS00105 at 28.229 kb on + strand, within HGI48_RS00105 at 28.229 kb on + strand, within HGI48_RS00105 at 28.230 kb on - strand at 28.230 kb on - strand, within HGI48_RS00105 at 28.230 kb on - strand, within HGI48_RS00105 at 28.230 kb on - strand, within HGI48_RS00105
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 25,054 + HGI48_RS00090 0.67 -0.1 25,133 + HGI48_RS00090 0.73 -0.1 25,133 + HGI48_RS00090 0.73 -2.5 25,133 + HGI48_RS00090 0.73 -0.1 25,134 - +2.4 25,134 - HGI48_RS00090 0.73 -1.2 25,134 - HGI48_RS00090 0.73 -1.5 25,227 + HGI48_RS00090 0.81 -1.7 25,228 - HGI48_RS00090 0.81 +1.1 25,228 - HGI48_RS00090 0.81 -1.7 25,286 + HGI48_RS00090 0.85 -1.1 25,286 + +2.7 25,287 - HGI48_RS00090 0.86 +1.2 25,287 - HGI48_RS00090 0.86 -0.6 25,303 - HGI48_RS00090 0.87 +0.3 25,303 - HGI48_RS00090 0.87 -1.5 25,303 - HGI48_RS00090 0.87 -0.8 25,303 - HGI48_RS00090 0.87 -0.4 25,320 + HGI48_RS00090 0.88 -0.4 25,321 - HGI48_RS00090 0.88 +1.6 25,364 + +0.1 25,364 + +1.2 25,365 - -0.5 25,365 - +0.2 25,393 - +0.4 25,401 - -1.6 25,419 + -1.5 25,419 + +0.9 25,419 + -0.5 25,419 + +0.3 25,420 - +0.2 25,420 - -1.6 25,420 - +1.1 25,420 - -0.7 25,420 - -1.1 25,427 + -0.1 25,437 - -0.6 25,452 + -1.3 25,493 + +0.2 25,493 + -1.5 25,493 + +0.1 25,493 + -1.0 25,493 + -0.2 25,493 + -0.9 25,493 + +1.2 25,493 + -0.7 25,493 + -0.0 25,493 + -0.1 25,493 + +1.0 25,493 + -0.1 25,493 + +1.1 25,494 - -0.5 25,494 - +0.4 25,494 - +0.1 25,494 - +0.5 25,494 - -0.9 25,494 - -1.7 25,494 - -0.6 25,494 - -0.1 25,495 + -0.3 25,495 + +0.7 25,495 + -0.1 25,495 + +0.9 25,495 + -1.0 25,495 + -0.1 25,495 + +1.2 25,496 - +0.9 25,496 - +0.6 25,496 - -0.1 25,496 - -2.1 25,496 - +0.9 25,528 + -1.7 25,528 + +0.4 25,529 - +0.1 25,529 - -0.7 25,529 - -0.7 25,547 - +0.3 25,946 + HGI48_RS00095 0.88 -1.3 25,946 + +0.9 25,946 + HGI48_RS00095 0.88 -0.6 25,947 - HGI48_RS00095 0.88 -1.9 25,971 + +0.4 25,971 + +0.0 25,972 - +0.7 25,983 + +0.9 25,983 + +0.9 25,983 + -0.6 25,984 - +1.3 25,984 - -0.2 25,984 - +0.3 26,154 + HGI48_RS00100 0.12 -0.3 26,267 - HGI48_RS00100 0.21 -0.9 26,274 + HGI48_RS00100 0.21 -1.1 26,274 + HGI48_RS00100 0.21 -0.6 26,274 + HGI48_RS00100 0.21 +0.6 26,274 + HGI48_RS00100 0.21 -0.6 26,275 - HGI48_RS00100 0.21 +1.1 26,289 + HGI48_RS00100 0.22 -0.1 26,289 + HGI48_RS00100 0.22 -1.5 26,289 + +3.0 26,290 - HGI48_RS00100 0.22 -1.5 26,374 + HGI48_RS00100 0.29 -0.2 26,374 + HGI48_RS00100 0.29 +1.9 26,374 + HGI48_RS00100 0.29 +1.0 26,375 - HGI48_RS00100 0.29 +0.1 26,376 + HGI48_RS00100 0.29 -1.1 26,376 + HGI48_RS00100 0.29 -1.4 26,376 + HGI48_RS00100 0.29 -0.3 26,376 + HGI48_RS00100 0.29 -0.8 26,376 + HGI48_RS00100 0.29 -0.9 26,377 - HGI48_RS00100 0.29 +0.4 26,409 - HGI48_RS00100 0.32 +0.5 26,449 + +0.9 26,454 + +0.3 26,454 + HGI48_RS00100 0.35 -0.1 26,454 + +1.4 26,454 + HGI48_RS00100 0.35 -1.1 26,455 - +0.3 26,458 + HGI48_RS00100 0.36 -0.6 26,458 + HGI48_RS00100 0.36 +0.1 26,459 - HGI48_RS00100 0.36 -1.5 26,459 - HGI48_RS00100 0.36 -0.9 26,459 - HGI48_RS00100 0.36 +0.4 26,460 + HGI48_RS00100 0.36 -0.9 26,460 + HGI48_RS00100 0.36 -0.7 26,460 + HGI48_RS00100 0.36 +0.9 26,460 + HGI48_RS00100 0.36 -1.0 26,460 + +1.9 26,460 + HGI48_RS00100 0.36 +0.3 26,460 + HGI48_RS00100 0.36 -0.4 26,460 + HGI48_RS00100 0.36 +0.1 26,460 + HGI48_RS00100 0.36 +0.1 26,460 + HGI48_RS00100 0.36 +0.3 26,460 + HGI48_RS00100 0.36 +0.6 26,461 - HGI48_RS00100 0.36 +0.6 26,461 - HGI48_RS00100 0.36 +1.1 26,461 - HGI48_RS00100 0.36 -0.1 26,461 - HGI48_RS00100 0.36 -0.5 26,461 - +1.3 26,461 - HGI48_RS00100 0.36 +0.3 26,461 - HGI48_RS00100 0.36 +0.6 26,461 - HGI48_RS00100 0.36 -2.6 26,461 - HGI48_RS00100 0.36 +0.2 26,571 + HGI48_RS00100 0.44 +0.9 26,662 + HGI48_RS00100 0.52 -0.0 26,663 - HGI48_RS00100 0.52 -1.1 26,709 + HGI48_RS00100 0.55 +0.6 26,709 + HGI48_RS00100 0.55 -0.5 26,709 + HGI48_RS00100 0.55 +0.9 26,709 + HGI48_RS00100 0.55 -0.5 26,709 + HGI48_RS00100 0.55 +0.9 26,710 - HGI48_RS00100 0.55 +0.1 26,710 - HGI48_RS00100 0.55 +0.4 26,710 - HGI48_RS00100 0.55 +0.2 26,710 - HGI48_RS00100 0.55 -0.1 26,710 - HGI48_RS00100 0.55 -0.1 26,710 - HGI48_RS00100 0.55 +0.2 26,710 - HGI48_RS00100 0.55 -0.5 26,853 + HGI48_RS00100 0.67 -0.4 26,948 - HGI48_RS00100 0.74 -0.2 27,010 + HGI48_RS00100 0.79 +0.1 27,011 - HGI48_RS00100 0.79 -1.1 27,023 + HGI48_RS00100 0.80 +0.2 27,023 + HGI48_RS00100 0.80 +1.1 27,024 - HGI48_RS00100 0.80 -0.4 27,024 - HGI48_RS00100 0.80 -2.1 27,024 - HGI48_RS00100 0.80 -1.3 27,024 - HGI48_RS00100 0.80 -0.0 27,024 - HGI48_RS00100 0.80 -3.2 27,024 - HGI48_RS00100 0.80 +0.9 27,024 - HGI48_RS00100 0.80 -0.1 27,093 + HGI48_RS00100 0.85 -0.4 27,093 + HGI48_RS00100 0.85 +2.1 27,093 + HGI48_RS00100 0.85 -0.1 27,093 + HGI48_RS00100 0.85 -0.2 27,094 - HGI48_RS00100 0.85 +0.2 27,094 - HGI48_RS00100 0.85 +0.6 27,122 + HGI48_RS00100 0.88 +0.9 27,123 - HGI48_RS00100 0.88 -0.3 27,170 + -1.5 27,170 + -0.6 27,171 - -1.0 27,202 + -0.1 27,202 + +0.6 27,202 + -0.5 27,203 - +0.9 27,203 - +0.3 27,203 - -0.1 27,203 - -0.1 27,581 + HGI48_RS00105 0.15 +0.4 27,582 - HGI48_RS00105 0.15 -0.9 27,582 - HGI48_RS00105 0.15 -1.2 27,582 - HGI48_RS00105 0.15 -0.3 27,788 + HGI48_RS00105 0.27 +0.1 27,788 + HGI48_RS00105 0.27 +0.1 27,788 + HGI48_RS00105 0.27 +0.7 27,788 + HGI48_RS00105 0.27 -1.1 27,788 + HGI48_RS00105 0.27 +0.5 27,788 + HGI48_RS00105 0.27 -0.7 27,789 - HGI48_RS00105 0.27 +1.0 27,789 - HGI48_RS00105 0.27 -0.1 27,789 - HGI48_RS00105 0.27 -0.1 27,789 - HGI48_RS00105 0.27 -1.1 27,789 - +1.9 28,120 - HGI48_RS00105 0.46 -0.3 28,225 + -0.1 28,225 + +1.9 28,225 + HGI48_RS00105 0.52 +0.7 28,225 + HGI48_RS00105 0.52 -0.6 28,225 + HGI48_RS00105 0.52 +1.4 28,225 + HGI48_RS00105 0.52 -0.1 28,226 - HGI48_RS00105 0.52 -0.3 28,226 - HGI48_RS00105 0.52 +0.9 28,226 - HGI48_RS00105 0.52 -0.4 28,226 - HGI48_RS00105 0.52 +0.1 28,226 - HGI48_RS00105 0.52 +0.0 28,229 + HGI48_RS00105 0.52 -0.1 28,229 + HGI48_RS00105 0.52 -0.8 28,229 + HGI48_RS00105 0.52 -1.5 28,229 + +0.9 28,229 + HGI48_RS00105 0.52 -0.1 28,229 + HGI48_RS00105 0.52 -0.3 28,229 + HGI48_RS00105 0.52 -0.0 28,230 - +0.3 28,230 - HGI48_RS00105 0.52 +0.1 28,230 - HGI48_RS00105 0.52 -0.3 28,230 - HGI48_RS00105 0.52 +0.2
Or see this region's nucleotide sequence