Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19615

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS19610 and HGI48_RS19615 overlap by 4 nucleotidesHGI48_RS19615 and HGI48_RS19620 are separated by 1 nucleotides HGI48_RS19610: HGI48_RS19610 - histidine kinase, at 4,377,232 to 4,378,521 _RS19610 HGI48_RS19615: HGI48_RS19615 - gamma-aminobutyric-acid receptor subunit beta, at 4,378,518 to 4,379,549 _RS19615 HGI48_RS19620: HGI48_RS19620 - glutamate decarboxylase, at 4,379,551 to 4,380,921 _RS19620 Position (kb) 4378 4379 4380Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4377.689 kb on + strand, within HGI48_RS19610at 4377.690 kb on - strandat 4377.690 kb on - strand, within HGI48_RS19610at 4377.690 kb on - strand, within HGI48_RS19610at 4377.749 kb on + strandat 4377.749 kb on + strand, within HGI48_RS19610at 4377.749 kb on + strand, within HGI48_RS19610at 4377.749 kb on + strand, within HGI48_RS19610at 4377.749 kb on + strand, within HGI48_RS19610at 4377.750 kb on - strand, within HGI48_RS19610at 4377.750 kb on - strand, within HGI48_RS19610at 4377.797 kb on + strand, within HGI48_RS19610at 4377.797 kb on + strand, within HGI48_RS19610at 4377.798 kb on - strand, within HGI48_RS19610at 4377.798 kb on - strandat 4377.824 kb on - strand, within HGI48_RS19610at 4377.917 kb on - strand, within HGI48_RS19610at 4377.917 kb on - strand, within HGI48_RS19610at 4377.944 kb on + strand, within HGI48_RS19610at 4377.945 kb on - strandat 4377.945 kb on - strand, within HGI48_RS19610at 4377.977 kb on - strand, within HGI48_RS19610at 4377.977 kb on - strand, within HGI48_RS19610at 4378.004 kb on + strand, within HGI48_RS19610at 4378.118 kb on + strand, within HGI48_RS19610at 4378.118 kb on + strand, within HGI48_RS19610at 4378.118 kb on + strand, within HGI48_RS19610at 4378.118 kb on + strand, within HGI48_RS19610at 4378.118 kb on + strand, within HGI48_RS19610at 4378.118 kb on + strandat 4378.119 kb on - strand, within HGI48_RS19610at 4378.119 kb on - strand, within HGI48_RS19610at 4378.119 kb on - strand, within HGI48_RS19610at 4378.119 kb on - strand, within HGI48_RS19610at 4378.227 kb on + strand, within HGI48_RS19610at 4378.228 kb on - strand, within HGI48_RS19610at 4378.229 kb on + strand, within HGI48_RS19610at 4378.229 kb on + strand, within HGI48_RS19610at 4378.229 kb on + strand, within HGI48_RS19610at 4378.229 kb on + strand, within HGI48_RS19610at 4378.229 kb on + strandat 4378.229 kb on + strand, within HGI48_RS19610at 4378.229 kb on + strand, within HGI48_RS19610at 4378.229 kb on + strand, within HGI48_RS19610at 4378.229 kb on + strandat 4378.229 kb on + strand, within HGI48_RS19610at 4378.229 kb on + strand, within HGI48_RS19610at 4378.229 kb on + strand, within HGI48_RS19610at 4378.229 kb on + strand, within HGI48_RS19610at 4378.229 kb on + strand, within HGI48_RS19610at 4378.229 kb on + strand, within HGI48_RS19610at 4378.229 kb on + strand, within HGI48_RS19610at 4378.229 kb on + strand, within HGI48_RS19610at 4378.229 kb on + strand, within HGI48_RS19610at 4378.230 kb on - strand, within HGI48_RS19610at 4378.230 kb on - strandat 4378.230 kb on - strand, within HGI48_RS19610at 4378.230 kb on - strand, within HGI48_RS19610at 4378.230 kb on - strand, within HGI48_RS19610at 4378.230 kb on - strand, within HGI48_RS19610at 4378.230 kb on - strand, within HGI48_RS19610at 4378.230 kb on - strandat 4378.230 kb on - strand, within HGI48_RS19610at 4378.230 kb on - strandat 4378.235 kb on + strand, within HGI48_RS19610at 4378.236 kb on - strand, within HGI48_RS19610at 4378.236 kb on - strand, within HGI48_RS19610at 4378.236 kb on - strand, within HGI48_RS19610at 4378.236 kb on - strand, within HGI48_RS19610at 4378.236 kb on - strand, within HGI48_RS19610at 4378.236 kb on - strand, within HGI48_RS19610at 4378.277 kb on - strand, within HGI48_RS19610at 4378.411 kb on - strandat 4378.411 kb on - strandat 4378.428 kb on - strandat 4378.436 kb on + strandat 4378.436 kb on + strandat 4378.436 kb on + strandat 4378.436 kb on + strandat 4378.436 kb on + strandat 4378.436 kb on + strandat 4378.436 kb on + strandat 4378.437 kb on - strandat 4378.437 kb on - strandat 4378.437 kb on - strandat 4378.437 kb on - strandat 4378.437 kb on - strandat 4378.437 kb on - strandat 4378.521 kb on + strandat 4378.521 kb on + strandat 4378.538 kb on + strandat 4378.539 kb on - strandat 4378.539 kb on - strandat 4378.539 kb on - strandat 4378.596 kb on + strandat 4378.597 kb on - strandat 4378.646 kb on + strand, within HGI48_RS19615at 4378.647 kb on - strand, within HGI48_RS19615at 4378.647 kb on - strand, within HGI48_RS19615at 4378.714 kb on + strandat 4378.715 kb on - strand, within HGI48_RS19615at 4378.715 kb on - strand, within HGI48_RS19615at 4378.733 kb on + strand, within HGI48_RS19615at 4378.733 kb on + strandat 4378.754 kb on - strand, within HGI48_RS19615at 4378.862 kb on + strand, within HGI48_RS19615at 4378.876 kb on + strand, within HGI48_RS19615at 4378.877 kb on - strand, within HGI48_RS19615at 4378.877 kb on - strand, within HGI48_RS19615at 4378.879 kb on + strand, within HGI48_RS19615at 4378.879 kb on + strand, within HGI48_RS19615at 4378.879 kb on + strand, within HGI48_RS19615at 4378.879 kb on + strand, within HGI48_RS19615at 4378.879 kb on + strand, within HGI48_RS19615at 4378.879 kb on + strand, within HGI48_RS19615at 4378.880 kb on - strand, within HGI48_RS19615at 4378.880 kb on - strand, within HGI48_RS19615at 4378.902 kb on + strand, within HGI48_RS19615at 4378.903 kb on - strand, within HGI48_RS19615at 4378.903 kb on - strand, within HGI48_RS19615at 4378.944 kb on + strand, within HGI48_RS19615at 4378.945 kb on - strand, within HGI48_RS19615at 4378.945 kb on - strandat 4379.033 kb on + strandat 4379.034 kb on - strand, within HGI48_RS19615at 4379.044 kb on + strand, within HGI48_RS19615at 4379.044 kb on + strandat 4379.045 kb on - strand, within HGI48_RS19615at 4379.045 kb on - strand, within HGI48_RS19615at 4379.052 kb on + strand, within HGI48_RS19615at 4379.052 kb on + strand, within HGI48_RS19615at 4379.052 kb on + strand, within HGI48_RS19615at 4379.052 kb on + strand, within HGI48_RS19615at 4379.052 kb on + strand, within HGI48_RS19615at 4379.052 kb on + strand, within HGI48_RS19615at 4379.053 kb on - strand, within HGI48_RS19615at 4379.053 kb on - strand, within HGI48_RS19615at 4379.054 kb on + strand, within HGI48_RS19615at 4379.054 kb on + strand, within HGI48_RS19615at 4379.081 kb on + strand, within HGI48_RS19615at 4379.084 kb on - strand, within HGI48_RS19615at 4379.182 kb on + strand, within HGI48_RS19615at 4379.182 kb on + strand, within HGI48_RS19615at 4379.182 kb on + strand, within HGI48_RS19615at 4379.182 kb on + strand, within HGI48_RS19615at 4379.182 kb on + strand, within HGI48_RS19615at 4379.183 kb on - strand, within HGI48_RS19615at 4379.220 kb on - strand, within HGI48_RS19615at 4379.274 kb on + strandat 4379.274 kb on + strand, within HGI48_RS19615at 4379.275 kb on - strand, within HGI48_RS19615at 4379.307 kb on - strandat 4379.389 kb on + strand, within HGI48_RS19615at 4379.389 kb on + strand, within HGI48_RS19615at 4379.389 kb on + strand, within HGI48_RS19615at 4379.390 kb on - strand, within HGI48_RS19615at 4379.390 kb on - strandat 4379.390 kb on - strand, within HGI48_RS19615at 4379.390 kb on - strand, within HGI48_RS19615at 4379.390 kb on - strand, within HGI48_RS19615at 4379.390 kb on - strandat 4379.390 kb on - strand, within HGI48_RS19615at 4379.390 kb on - strand, within HGI48_RS19615at 4379.416 kb on + strand, within HGI48_RS19615at 4379.423 kb on + strand, within HGI48_RS19615at 4379.423 kb on + strand, within HGI48_RS19615at 4379.423 kb on + strand, within HGI48_RS19615at 4379.423 kb on + strand, within HGI48_RS19615at 4379.423 kb on + strand, within HGI48_RS19615at 4379.423 kb on + strand, within HGI48_RS19615at 4379.424 kb on - strand, within HGI48_RS19615at 4379.424 kb on - strand, within HGI48_RS19615at 4379.429 kb on + strand, within HGI48_RS19615at 4379.430 kb on - strand, within HGI48_RS19615at 4379.430 kb on - strand, within HGI48_RS19615at 4379.638 kb on + strandat 4379.638 kb on + strandat 4379.638 kb on + strandat 4379.835 kb on - strand, within HGI48_RS19620at 4379.842 kb on + strand, within HGI48_RS19620at 4379.842 kb on + strand, within HGI48_RS19620at 4379.842 kb on + strand, within HGI48_RS19620at 4379.969 kb on + strand, within HGI48_RS19620at 4379.969 kb on + strand, within HGI48_RS19620at 4379.969 kb on + strand, within HGI48_RS19620at 4379.970 kb on - strand, within HGI48_RS19620at 4379.970 kb on - strand, within HGI48_RS19620at 4379.970 kb on - strand, within HGI48_RS19620at 4379.970 kb on - strand, within HGI48_RS19620at 4380.019 kb on + strand, within HGI48_RS19620at 4380.039 kb on + strand, within HGI48_RS19620at 4380.039 kb on + strand, within HGI48_RS19620at 4380.040 kb on - strand, within HGI48_RS19620at 4380.040 kb on - strand, within HGI48_RS19620at 4380.140 kb on + strandat 4380.140 kb on + strand, within HGI48_RS19620at 4380.177 kb on - strand, within HGI48_RS19620at 4380.217 kb on + strand, within HGI48_RS19620at 4380.217 kb on + strand, within HGI48_RS19620at 4380.217 kb on + strand, within HGI48_RS19620at 4380.218 kb on - strand, within HGI48_RS19620at 4380.218 kb on - strand, within HGI48_RS19620at 4380.483 kb on + strand, within HGI48_RS19620at 4380.483 kb on + strand, within HGI48_RS19620at 4380.483 kb on + strand, within HGI48_RS19620at 4380.484 kb on - strand, within HGI48_RS19620at 4380.484 kb on - strandat 4380.494 kb on + strandat 4380.494 kb on + strand, within HGI48_RS19620at 4380.494 kb on + strand, within HGI48_RS19620at 4380.495 kb on - strand, within HGI48_RS19620

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,377,689 + HGI48_RS19610 0.35 -0.6
4,377,690 - +0.6
4,377,690 - HGI48_RS19610 0.36 -1.7
4,377,690 - HGI48_RS19610 0.36 -0.4
4,377,749 + +1.4
4,377,749 + HGI48_RS19610 0.40 +0.0
4,377,749 + HGI48_RS19610 0.40 +0.2
4,377,749 + HGI48_RS19610 0.40 -0.0
4,377,749 + HGI48_RS19610 0.40 -0.1
4,377,750 - HGI48_RS19610 0.40 +0.4
4,377,750 - HGI48_RS19610 0.40 +0.3
4,377,797 + HGI48_RS19610 0.44 -1.4
4,377,797 + HGI48_RS19610 0.44 -0.4
4,377,798 - HGI48_RS19610 0.44 -1.5
4,377,798 - +1.6
4,377,824 - HGI48_RS19610 0.46 -0.2
4,377,917 - HGI48_RS19610 0.53 -0.2
4,377,917 - HGI48_RS19610 0.53 +0.9
4,377,944 + HGI48_RS19610 0.55 -1.2
4,377,945 - +0.0
4,377,945 - HGI48_RS19610 0.55 +1.6
4,377,977 - HGI48_RS19610 0.58 -1.0
4,377,977 - HGI48_RS19610 0.58 -0.4
4,378,004 + HGI48_RS19610 0.60 -0.5
4,378,118 + HGI48_RS19610 0.69 -0.2
4,378,118 + HGI48_RS19610 0.69 +0.2
4,378,118 + HGI48_RS19610 0.69 +0.0
4,378,118 + HGI48_RS19610 0.69 -1.2
4,378,118 + HGI48_RS19610 0.69 -1.2
4,378,118 + +2.2
4,378,119 - HGI48_RS19610 0.69 -0.6
4,378,119 - HGI48_RS19610 0.69 -0.6
4,378,119 - HGI48_RS19610 0.69 -2.4
4,378,119 - HGI48_RS19610 0.69 -0.1
4,378,227 + HGI48_RS19610 0.77 +1.1
4,378,228 - HGI48_RS19610 0.77 -0.3
4,378,229 + HGI48_RS19610 0.77 -0.4
4,378,229 + HGI48_RS19610 0.77 +0.7
4,378,229 + HGI48_RS19610 0.77 -0.6
4,378,229 + HGI48_RS19610 0.77 +0.7
4,378,229 + +0.6
4,378,229 + HGI48_RS19610 0.77 +0.3
4,378,229 + HGI48_RS19610 0.77 -0.3
4,378,229 + HGI48_RS19610 0.77 -0.7
4,378,229 + +0.6
4,378,229 + HGI48_RS19610 0.77 +0.2
4,378,229 + HGI48_RS19610 0.77 -2.0
4,378,229 + HGI48_RS19610 0.77 -0.2
4,378,229 + HGI48_RS19610 0.77 -1.5
4,378,229 + HGI48_RS19610 0.77 -0.4
4,378,229 + HGI48_RS19610 0.77 -2.5
4,378,229 + HGI48_RS19610 0.77 -2.5
4,378,229 + HGI48_RS19610 0.77 -2.0
4,378,229 + HGI48_RS19610 0.77 -0.5
4,378,230 - HGI48_RS19610 0.77 -1.7
4,378,230 - +0.0
4,378,230 - HGI48_RS19610 0.77 -0.4
4,378,230 - HGI48_RS19610 0.77 -0.3
4,378,230 - HGI48_RS19610 0.77 -0.7
4,378,230 - HGI48_RS19610 0.77 +0.8
4,378,230 - HGI48_RS19610 0.77 -0.7
4,378,230 - -1.0
4,378,230 - HGI48_RS19610 0.77 +1.2
4,378,230 - -1.0
4,378,235 + HGI48_RS19610 0.78 +1.3
4,378,236 - HGI48_RS19610 0.78 +0.0
4,378,236 - HGI48_RS19610 0.78 +1.1
4,378,236 - HGI48_RS19610 0.78 +0.6
4,378,236 - HGI48_RS19610 0.78 +0.5
4,378,236 - HGI48_RS19610 0.78 +0.3
4,378,236 - HGI48_RS19610 0.78 -0.6
4,378,277 - HGI48_RS19610 0.81 -0.4
4,378,411 - -0.4
4,378,411 - -0.1
4,378,428 - -0.2
4,378,436 + -1.3
4,378,436 + -0.1
4,378,436 + +0.6
4,378,436 + -0.4
4,378,436 + -0.3
4,378,436 + -0.2
4,378,436 + +1.0
4,378,437 - +0.3
4,378,437 - +0.3
4,378,437 - -0.8
4,378,437 - -1.4
4,378,437 - -1.4
4,378,437 - +1.6
4,378,521 + -0.5
4,378,521 + +0.1
4,378,538 + +0.6
4,378,539 - +0.6
4,378,539 - +0.2
4,378,539 - +0.6
4,378,596 + -1.5
4,378,597 - +0.6
4,378,646 + HGI48_RS19615 0.12 -1.0
4,378,647 - HGI48_RS19615 0.12 +0.6
4,378,647 - HGI48_RS19615 0.12 -2.0
4,378,714 + -1.0
4,378,715 - HGI48_RS19615 0.19 -0.2
4,378,715 - HGI48_RS19615 0.19 +0.6
4,378,733 + HGI48_RS19615 0.21 +0.5
4,378,733 + +1.8
4,378,754 - HGI48_RS19615 0.23 +0.9
4,378,862 + HGI48_RS19615 0.33 -0.4
4,378,876 + HGI48_RS19615 0.35 +0.1
4,378,877 - HGI48_RS19615 0.35 -0.7
4,378,877 - HGI48_RS19615 0.35 -0.3
4,378,879 + HGI48_RS19615 0.35 +0.0
4,378,879 + HGI48_RS19615 0.35 -2.8
4,378,879 + HGI48_RS19615 0.35 +0.0
4,378,879 + HGI48_RS19615 0.35 -1.4
4,378,879 + HGI48_RS19615 0.35 -0.8
4,378,879 + HGI48_RS19615 0.35 -0.7
4,378,880 - HGI48_RS19615 0.35 +0.0
4,378,880 - HGI48_RS19615 0.35 +0.8
4,378,902 + HGI48_RS19615 0.37 -0.4
4,378,903 - HGI48_RS19615 0.37 -0.2
4,378,903 - HGI48_RS19615 0.37 -1.2
4,378,944 + HGI48_RS19615 0.41 +0.0
4,378,945 - HGI48_RS19615 0.41 +0.1
4,378,945 - +1.6
4,379,033 + +1.9
4,379,034 - HGI48_RS19615 0.50 -0.2
4,379,044 + HGI48_RS19615 0.51 -2.4
4,379,044 + +1.2
4,379,045 - HGI48_RS19615 0.51 -0.8
4,379,045 - HGI48_RS19615 0.51 +0.2
4,379,052 + HGI48_RS19615 0.52 -1.4
4,379,052 + HGI48_RS19615 0.52 -1.1
4,379,052 + HGI48_RS19615 0.52 -1.0
4,379,052 + HGI48_RS19615 0.52 -0.3
4,379,052 + HGI48_RS19615 0.52 +0.6
4,379,052 + HGI48_RS19615 0.52 -0.5
4,379,053 - HGI48_RS19615 0.52 -0.5
4,379,053 - HGI48_RS19615 0.52 -1.0
4,379,054 + HGI48_RS19615 0.52 -1.5
4,379,054 + HGI48_RS19615 0.52 -0.1
4,379,081 + HGI48_RS19615 0.55 +0.1
4,379,084 - HGI48_RS19615 0.55 +0.9
4,379,182 + HGI48_RS19615 0.64 -0.7
4,379,182 + HGI48_RS19615 0.64 -0.5
4,379,182 + HGI48_RS19615 0.64 -0.4
4,379,182 + HGI48_RS19615 0.64 -2.3
4,379,182 + HGI48_RS19615 0.64 -1.7
4,379,183 - HGI48_RS19615 0.64 -0.8
4,379,220 - HGI48_RS19615 0.68 -1.7
4,379,274 + +1.2
4,379,274 + HGI48_RS19615 0.73 +0.1
4,379,275 - HGI48_RS19615 0.73 +0.6
4,379,307 - +1.6
4,379,389 + HGI48_RS19615 0.84 -2.2
4,379,389 + HGI48_RS19615 0.84 -1.4
4,379,389 + HGI48_RS19615 0.84 -1.0
4,379,390 - HGI48_RS19615 0.84 +0.8
4,379,390 - +2.2
4,379,390 - HGI48_RS19615 0.84 +0.8
4,379,390 - HGI48_RS19615 0.84 -0.7
4,379,390 - HGI48_RS19615 0.84 -0.8
4,379,390 - +0.0
4,379,390 - HGI48_RS19615 0.84 -0.5
4,379,390 - HGI48_RS19615 0.84 -1.1
4,379,416 + HGI48_RS19615 0.87 +0.8
4,379,423 + HGI48_RS19615 0.88 -0.4
4,379,423 + HGI48_RS19615 0.88 +0.2
4,379,423 + HGI48_RS19615 0.88 -1.1
4,379,423 + HGI48_RS19615 0.88 +0.9
4,379,423 + HGI48_RS19615 0.88 -0.6
4,379,423 + HGI48_RS19615 0.88 +1.1
4,379,424 - HGI48_RS19615 0.88 +0.2
4,379,424 - HGI48_RS19615 0.88 +0.4
4,379,429 + HGI48_RS19615 0.88 -2.0
4,379,430 - HGI48_RS19615 0.88 +0.1
4,379,430 - HGI48_RS19615 0.88 -0.1
4,379,638 + +0.5
4,379,638 + -2.2
4,379,638 + +0.0
4,379,835 - HGI48_RS19620 0.21 +0.4
4,379,842 + HGI48_RS19620 0.21 -1.0
4,379,842 + HGI48_RS19620 0.21 -1.4
4,379,842 + HGI48_RS19620 0.21 -1.2
4,379,969 + HGI48_RS19620 0.30 -2.2
4,379,969 + HGI48_RS19620 0.30 -1.2
4,379,969 + HGI48_RS19620 0.30 -0.4
4,379,970 - HGI48_RS19620 0.31 -0.4
4,379,970 - HGI48_RS19620 0.31 -0.4
4,379,970 - HGI48_RS19620 0.31 -0.3
4,379,970 - HGI48_RS19620 0.31 -1.1
4,380,019 + HGI48_RS19620 0.34 -0.2
4,380,039 + HGI48_RS19620 0.36 +1.2
4,380,039 + HGI48_RS19620 0.36 +0.4
4,380,040 - HGI48_RS19620 0.36 -0.5
4,380,040 - HGI48_RS19620 0.36 -0.3
4,380,140 + -1.0
4,380,140 + HGI48_RS19620 0.43 -0.4
4,380,177 - HGI48_RS19620 0.46 -0.2
4,380,217 + HGI48_RS19620 0.49 -1.0
4,380,217 + HGI48_RS19620 0.49 +0.2
4,380,217 + HGI48_RS19620 0.49 -0.4
4,380,218 - HGI48_RS19620 0.49 -2.4
4,380,218 - HGI48_RS19620 0.49 -0.8
4,380,483 + HGI48_RS19620 0.68 +0.3
4,380,483 + HGI48_RS19620 0.68 -0.2
4,380,483 + HGI48_RS19620 0.68 -1.2
4,380,484 - HGI48_RS19620 0.68 -1.7
4,380,484 - +1.6
4,380,494 + +0.0
4,380,494 + HGI48_RS19620 0.69 +1.4
4,380,494 + HGI48_RS19620 0.69 -0.4
4,380,495 - HGI48_RS19620 0.69 -0.5

Or see this region's nucleotide sequence