Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19550

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS19540 and HGI48_RS19545 are separated by 134 nucleotidesHGI48_RS19545 and HGI48_RS19550 are separated by 82 nucleotidesHGI48_RS19550 and HGI48_RS19555 are separated by 133 nucleotides HGI48_RS19540: HGI48_RS19540 - LysE family translocator, at 4,364,396 to 4,365,001 _RS19540 HGI48_RS19545: HGI48_RS19545 - hydrolase, at 4,365,136 to 4,365,249 _RS19545 HGI48_RS19550: HGI48_RS19550 - YheU family protein, at 4,365,332 to 4,365,562 _RS19550 HGI48_RS19555: HGI48_RS19555 - phosphoribulokinase, at 4,365,696 to 4,366,565 _RS19555 Position (kb) 4365 4366Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4364.379 kb on + strandat 4364.380 kb on - strandat 4364.380 kb on - strandat 4364.577 kb on + strand, within HGI48_RS19540at 4364.578 kb on - strand, within HGI48_RS19540at 4364.667 kb on + strand, within HGI48_RS19540at 4364.715 kb on + strandat 4364.715 kb on + strand, within HGI48_RS19540at 4364.715 kb on + strand, within HGI48_RS19540at 4364.715 kb on + strand, within HGI48_RS19540at 4364.754 kb on + strand, within HGI48_RS19540at 4364.754 kb on + strand, within HGI48_RS19540at 4364.754 kb on + strand, within HGI48_RS19540at 4364.754 kb on + strand, within HGI48_RS19540at 4364.755 kb on - strand, within HGI48_RS19540at 4364.755 kb on - strand, within HGI48_RS19540at 4364.755 kb on - strandat 4364.755 kb on - strandat 4364.755 kb on - strandat 4364.881 kb on + strand, within HGI48_RS19540at 4364.881 kb on + strand, within HGI48_RS19540at 4364.881 kb on + strand, within HGI48_RS19540at 4364.882 kb on - strand, within HGI48_RS19540at 4364.882 kb on - strand, within HGI48_RS19540at 4364.891 kb on + strand, within HGI48_RS19540at 4364.892 kb on - strand, within HGI48_RS19540at 4364.921 kb on + strand, within HGI48_RS19540at 4364.921 kb on + strand, within HGI48_RS19540at 4364.921 kb on + strandat 4364.921 kb on + strand, within HGI48_RS19540at 4364.921 kb on + strand, within HGI48_RS19540at 4364.921 kb on + strand, within HGI48_RS19540at 4364.922 kb on - strand, within HGI48_RS19540at 4364.922 kb on - strand, within HGI48_RS19540at 4364.922 kb on - strand, within HGI48_RS19540at 4364.922 kb on - strand, within HGI48_RS19540at 4364.922 kb on - strand, within HGI48_RS19540at 4364.922 kb on - strand, within HGI48_RS19540at 4364.922 kb on - strand, within HGI48_RS19540at 4364.922 kb on - strand, within HGI48_RS19540at 4364.922 kb on - strand, within HGI48_RS19540at 4364.922 kb on - strand, within HGI48_RS19540at 4364.922 kb on - strand, within HGI48_RS19540at 4364.922 kb on - strand, within HGI48_RS19540at 4364.922 kb on - strand, within HGI48_RS19540at 4364.926 kb on + strand, within HGI48_RS19540at 4364.926 kb on + strand, within HGI48_RS19540at 4364.926 kb on + strand, within HGI48_RS19540at 4364.926 kb on + strand, within HGI48_RS19540at 4364.926 kb on + strand, within HGI48_RS19540at 4364.927 kb on - strand, within HGI48_RS19540at 4364.927 kb on - strand, within HGI48_RS19540at 4364.927 kb on - strand, within HGI48_RS19540at 4364.927 kb on - strandat 4364.927 kb on - strand, within HGI48_RS19540at 4364.927 kb on - strandat 4364.927 kb on - strand, within HGI48_RS19540at 4364.927 kb on - strand, within HGI48_RS19540at 4364.929 kb on + strand, within HGI48_RS19540at 4364.930 kb on - strand, within HGI48_RS19540at 4364.930 kb on - strand, within HGI48_RS19540at 4364.930 kb on - strand, within HGI48_RS19540at 4365.039 kb on + strandat 4365.039 kb on + strandat 4365.039 kb on + strandat 4365.040 kb on - strandat 4365.040 kb on - strandat 4365.052 kb on + strandat 4365.052 kb on + strandat 4365.053 kb on - strandat 4365.073 kb on + strandat 4365.074 kb on - strandat 4365.142 kb on - strandat 4365.157 kb on - strand, within HGI48_RS19545at 4365.157 kb on - strand, within HGI48_RS19545at 4365.245 kb on + strandat 4365.245 kb on + strandat 4365.245 kb on + strandat 4365.245 kb on + strandat 4365.246 kb on - strandat 4365.246 kb on - strandat 4365.293 kb on - strandat 4365.307 kb on + strandat 4365.315 kb on + strandat 4365.316 kb on - strandat 4365.414 kb on - strand, within HGI48_RS19550at 4365.454 kb on + strand, within HGI48_RS19550at 4365.454 kb on + strand, within HGI48_RS19550at 4365.455 kb on - strand, within HGI48_RS19550at 4365.456 kb on + strand, within HGI48_RS19550at 4365.456 kb on + strand, within HGI48_RS19550at 4365.456 kb on + strand, within HGI48_RS19550at 4365.456 kb on + strand, within HGI48_RS19550at 4365.456 kb on + strand, within HGI48_RS19550at 4365.457 kb on - strand, within HGI48_RS19550at 4365.457 kb on - strand, within HGI48_RS19550at 4365.457 kb on - strand, within HGI48_RS19550at 4365.457 kb on - strand, within HGI48_RS19550at 4365.457 kb on - strand, within HGI48_RS19550at 4365.457 kb on - strand, within HGI48_RS19550at 4365.520 kb on + strand, within HGI48_RS19550at 4365.558 kb on - strandat 4365.558 kb on - strandat 4365.558 kb on - strandat 4365.558 kb on - strandat 4365.560 kb on + strandat 4365.579 kb on + strandat 4365.588 kb on - strandat 4365.609 kb on - strandat 4365.610 kb on + strandat 4365.619 kb on + strandat 4365.825 kb on + strand, within HGI48_RS19555at 4365.825 kb on + strand, within HGI48_RS19555at 4365.825 kb on + strand, within HGI48_RS19555at 4365.825 kb on + strand, within HGI48_RS19555at 4365.897 kb on + strand, within HGI48_RS19555at 4365.898 kb on - strand, within HGI48_RS19555at 4365.944 kb on + strand, within HGI48_RS19555at 4365.985 kb on - strand, within HGI48_RS19555at 4365.997 kb on - strand, within HGI48_RS19555at 4366.014 kb on + strand, within HGI48_RS19555at 4366.080 kb on + strand, within HGI48_RS19555at 4366.263 kb on + strand, within HGI48_RS19555at 4366.263 kb on + strand, within HGI48_RS19555at 4366.263 kb on + strand, within HGI48_RS19555at 4366.264 kb on - strand, within HGI48_RS19555at 4366.264 kb on - strand, within HGI48_RS19555at 4366.272 kb on + strand, within HGI48_RS19555at 4366.272 kb on + strand, within HGI48_RS19555at 4366.272 kb on + strand, within HGI48_RS19555at 4366.272 kb on + strand, within HGI48_RS19555at 4366.272 kb on + strand, within HGI48_RS19555at 4366.272 kb on + strand, within HGI48_RS19555at 4366.272 kb on + strandat 4366.272 kb on + strandat 4366.273 kb on - strand, within HGI48_RS19555at 4366.273 kb on - strand, within HGI48_RS19555at 4366.273 kb on - strand, within HGI48_RS19555at 4366.273 kb on - strand, within HGI48_RS19555at 4366.273 kb on - strand, within HGI48_RS19555at 4366.273 kb on - strand, within HGI48_RS19555at 4366.273 kb on - strand, within HGI48_RS19555at 4366.273 kb on - strand, within HGI48_RS19555at 4366.273 kb on - strand, within HGI48_RS19555at 4366.273 kb on - strand, within HGI48_RS19555at 4366.327 kb on + strand, within HGI48_RS19555at 4366.515 kb on - strandat 4366.550 kb on + strandat 4366.550 kb on + strandat 4366.550 kb on + strandat 4366.550 kb on + strandat 4366.557 kb on - strandat 4366.557 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,364,379 + +0.2
4,364,380 - +0.3
4,364,380 - -1.3
4,364,577 + HGI48_RS19540 0.30 +0.4
4,364,578 - HGI48_RS19540 0.30 +0.8
4,364,667 + HGI48_RS19540 0.45 -0.2
4,364,715 + +1.6
4,364,715 + HGI48_RS19540 0.53 -0.2
4,364,715 + HGI48_RS19540 0.53 -0.6
4,364,715 + HGI48_RS19540 0.53 -0.4
4,364,754 + HGI48_RS19540 0.59 -1.2
4,364,754 + HGI48_RS19540 0.59 -0.2
4,364,754 + HGI48_RS19540 0.59 +0.9
4,364,754 + HGI48_RS19540 0.59 -0.7
4,364,755 - HGI48_RS19540 0.59 +0.7
4,364,755 - HGI48_RS19540 0.59 -0.0
4,364,755 - +0.6
4,364,755 - -1.0
4,364,755 - -1.0
4,364,881 + HGI48_RS19540 0.80 -0.1
4,364,881 + HGI48_RS19540 0.80 -0.4
4,364,881 + HGI48_RS19540 0.80 -1.4
4,364,882 - HGI48_RS19540 0.80 -1.0
4,364,882 - HGI48_RS19540 0.80 -0.4
4,364,891 + HGI48_RS19540 0.82 +1.3
4,364,892 - HGI48_RS19540 0.82 -2.4
4,364,921 + HGI48_RS19540 0.87 -0.5
4,364,921 + HGI48_RS19540 0.87 -0.7
4,364,921 + +1.4
4,364,921 + HGI48_RS19540 0.87 -0.1
4,364,921 + HGI48_RS19540 0.87 -1.1
4,364,921 + HGI48_RS19540 0.87 -0.6
4,364,922 - HGI48_RS19540 0.87 +0.6
4,364,922 - HGI48_RS19540 0.87 +0.6
4,364,922 - HGI48_RS19540 0.87 -0.8
4,364,922 - HGI48_RS19540 0.87 -1.4
4,364,922 - HGI48_RS19540 0.87 +0.4
4,364,922 - HGI48_RS19540 0.87 +0.9
4,364,922 - HGI48_RS19540 0.87 +0.6
4,364,922 - HGI48_RS19540 0.87 +0.2
4,364,922 - HGI48_RS19540 0.87 -0.7
4,364,922 - HGI48_RS19540 0.87 -1.4
4,364,922 - HGI48_RS19540 0.87 +0.3
4,364,922 - HGI48_RS19540 0.87 +0.3
4,364,922 - HGI48_RS19540 0.87 -2.8
4,364,926 + HGI48_RS19540 0.87 +0.9
4,364,926 + HGI48_RS19540 0.87 +1.9
4,364,926 + HGI48_RS19540 0.87 +0.1
4,364,926 + HGI48_RS19540 0.87 +0.5
4,364,926 + HGI48_RS19540 0.87 -0.7
4,364,927 - HGI48_RS19540 0.88 -0.1
4,364,927 - HGI48_RS19540 0.88 -1.3
4,364,927 - HGI48_RS19540 0.88 -0.7
4,364,927 - +1.0
4,364,927 - HGI48_RS19540 0.88 +0.4
4,364,927 - -1.0
4,364,927 - HGI48_RS19540 0.88 -2.7
4,364,927 - HGI48_RS19540 0.88 -0.4
4,364,929 + HGI48_RS19540 0.88 +0.1
4,364,930 - HGI48_RS19540 0.88 +0.4
4,364,930 - HGI48_RS19540 0.88 -0.7
4,364,930 - HGI48_RS19540 0.88 +0.0
4,365,039 + +0.6
4,365,039 + +0.6
4,365,039 + -0.7
4,365,040 - +0.6
4,365,040 - -1.5
4,365,052 + -0.1
4,365,052 + -1.4
4,365,053 - -1.4
4,365,073 + -0.2
4,365,074 - +1.0
4,365,142 - -2.6
4,365,157 - HGI48_RS19545 0.18 -0.1
4,365,157 - HGI48_RS19545 0.18 +0.6
4,365,245 + -0.6
4,365,245 + -2.0
4,365,245 + +0.4
4,365,245 + +1.4
4,365,246 - -0.2
4,365,246 - +0.1
4,365,293 - -0.7
4,365,307 + -0.6
4,365,315 + -0.9
4,365,316 - -0.4
4,365,414 - HGI48_RS19550 0.35 +0.8
4,365,454 + HGI48_RS19550 0.53 -1.4
4,365,454 + HGI48_RS19550 0.53 -1.7
4,365,455 - HGI48_RS19550 0.53 -1.0
4,365,456 + HGI48_RS19550 0.54 +0.2
4,365,456 + HGI48_RS19550 0.54 +1.0
4,365,456 + HGI48_RS19550 0.54 +0.0
4,365,456 + HGI48_RS19550 0.54 +0.5
4,365,456 + HGI48_RS19550 0.54 -1.0
4,365,457 - HGI48_RS19550 0.54 +0.4
4,365,457 - HGI48_RS19550 0.54 +0.0
4,365,457 - HGI48_RS19550 0.54 -2.5
4,365,457 - HGI48_RS19550 0.54 +0.5
4,365,457 - HGI48_RS19550 0.54 +1.4
4,365,457 - HGI48_RS19550 0.54 -0.8
4,365,520 + HGI48_RS19550 0.81 -0.1
4,365,558 - -2.4
4,365,558 - +1.6
4,365,558 - +0.0
4,365,558 - +2.0
4,365,560 + -0.1
4,365,579 + -0.6
4,365,588 - +0.8
4,365,609 - -0.4
4,365,610 + -1.9
4,365,619 + +1.3
4,365,825 + HGI48_RS19555 0.15 +0.6
4,365,825 + HGI48_RS19555 0.15 -0.7
4,365,825 + HGI48_RS19555 0.15 -2.4
4,365,825 + HGI48_RS19555 0.15 -0.0
4,365,897 + HGI48_RS19555 0.23 +0.8
4,365,898 - HGI48_RS19555 0.23 +0.2
4,365,944 + HGI48_RS19555 0.29 -0.3
4,365,985 - HGI48_RS19555 0.33 -0.1
4,365,997 - HGI48_RS19555 0.35 +0.8
4,366,014 + HGI48_RS19555 0.37 -1.0
4,366,080 + HGI48_RS19555 0.44 -2.8
4,366,263 + HGI48_RS19555 0.65 -0.2
4,366,263 + HGI48_RS19555 0.65 -0.1
4,366,263 + HGI48_RS19555 0.65 -1.1
4,366,264 - HGI48_RS19555 0.65 -0.7
4,366,264 - HGI48_RS19555 0.65 -0.4
4,366,272 + HGI48_RS19555 0.66 -2.2
4,366,272 + HGI48_RS19555 0.66 +0.1
4,366,272 + HGI48_RS19555 0.66 -1.0
4,366,272 + HGI48_RS19555 0.66 -0.4
4,366,272 + HGI48_RS19555 0.66 +0.1
4,366,272 + HGI48_RS19555 0.66 -1.1
4,366,272 + +0.6
4,366,272 + +1.4
4,366,273 - HGI48_RS19555 0.66 -0.0
4,366,273 - HGI48_RS19555 0.66 -0.4
4,366,273 - HGI48_RS19555 0.66 +0.3
4,366,273 - HGI48_RS19555 0.66 -1.5
4,366,273 - HGI48_RS19555 0.66 +1.3
4,366,273 - HGI48_RS19555 0.66 -1.1
4,366,273 - HGI48_RS19555 0.66 +0.9
4,366,273 - HGI48_RS19555 0.66 +0.6
4,366,273 - HGI48_RS19555 0.66 -0.9
4,366,273 - HGI48_RS19555 0.66 -2.7
4,366,327 + HGI48_RS19555 0.73 -0.1
4,366,515 - +0.4
4,366,550 + -0.7
4,366,550 + -0.7
4,366,550 + +0.3
4,366,550 + -0.4
4,366,557 - +0.7
4,366,557 - -2.2

Or see this region's nucleotide sequence