Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19090 and HGI48_RS19095 are separated by 51 nucleotides HGI48_RS19095 and HGI48_RS19100 are separated by 228 nucleotides HGI48_RS19100 and HGI48_RS19105 are separated by 567 nucleotides
HGI48_RS19090: HGI48_RS19090 - EF-P beta-lysylation protein EpmB, at 4,283,650 to 4,284,687
_RS19090
HGI48_RS19095: HGI48_RS19095 - DUF4156 domain-containing protein, at 4,284,739 to 4,285,083
_RS19095
HGI48_RS19100: HGI48_RS19100 - glucose-6-phosphate isomerase, at 4,285,312 to 4,286,961
_RS19100
HGI48_RS19105: HGI48_RS19105 - lysine-sensitive aspartokinase 3, at 4,287,529 to 4,288,893
_RS19105
Position (kb) 4285
4286
4287 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4284.470 kb on + strand, within HGI48_RS19090 at 4284.497 kb on - strand, within HGI48_RS19090 at 4284.497 kb on - strand, within HGI48_RS19090 at 4284.750 kb on + strand at 4284.750 kb on + strand at 4284.750 kb on + strand at 4284.750 kb on + strand at 4284.750 kb on + strand at 4284.751 kb on - strand at 4284.751 kb on - strand at 4284.751 kb on - strand at 4284.751 kb on - strand at 4284.752 kb on + strand at 4284.752 kb on + strand at 4284.753 kb on - strand at 4284.753 kb on - strand at 4284.753 kb on - strand at 4284.796 kb on + strand, within HGI48_RS19095 at 4284.827 kb on + strand, within HGI48_RS19095 at 4284.828 kb on - strand, within HGI48_RS19095 at 4284.832 kb on + strand, within HGI48_RS19095 at 4284.832 kb on + strand, within HGI48_RS19095 at 4284.832 kb on + strand, within HGI48_RS19095 at 4284.832 kb on + strand, within HGI48_RS19095 at 4284.832 kb on + strand, within HGI48_RS19095 at 4284.833 kb on - strand, within HGI48_RS19095 at 4284.833 kb on - strand, within HGI48_RS19095 at 4284.976 kb on - strand, within HGI48_RS19095 at 4285.026 kb on + strand, within HGI48_RS19095 at 4285.026 kb on + strand at 4285.069 kb on + strand at 4285.069 kb on + strand at 4285.069 kb on + strand at 4285.070 kb on - strand at 4285.070 kb on - strand at 4285.070 kb on - strand at 4285.070 kb on - strand at 4285.071 kb on + strand at 4285.071 kb on + strand at 4285.072 kb on - strand at 4285.072 kb on - strand at 4285.072 kb on - strand at 4285.105 kb on + strand at 4285.151 kb on - strand at 4285.171 kb on + strand at 4285.172 kb on - strand at 4285.210 kb on + strand at 4285.210 kb on + strand at 4285.210 kb on + strand at 4285.210 kb on + strand at 4285.210 kb on + strand at 4285.210 kb on + strand at 4285.210 kb on + strand at 4285.210 kb on + strand at 4285.210 kb on + strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.249 kb on - strand at 4285.291 kb on + strand at 4285.294 kb on + strand at 4285.295 kb on - strand at 4285.310 kb on - strand at 4285.354 kb on - strand at 4285.576 kb on + strand at 4285.576 kb on + strand, within HGI48_RS19100 at 4285.577 kb on - strand at 4285.577 kb on - strand, within HGI48_RS19100 at 4285.797 kb on - strand, within HGI48_RS19100 at 4285.797 kb on - strand, within HGI48_RS19100 at 4285.883 kb on + strand, within HGI48_RS19100 at 4285.883 kb on + strand, within HGI48_RS19100 at 4285.883 kb on + strand, within HGI48_RS19100 at 4285.883 kb on + strand, within HGI48_RS19100 at 4285.883 kb on + strand, within HGI48_RS19100 at 4285.883 kb on + strand, within HGI48_RS19100 at 4285.883 kb on + strand, within HGI48_RS19100 at 4285.884 kb on - strand, within HGI48_RS19100 at 4285.884 kb on - strand, within HGI48_RS19100 at 4285.884 kb on - strand, within HGI48_RS19100 at 4285.884 kb on - strand, within HGI48_RS19100 at 4285.884 kb on - strand, within HGI48_RS19100 at 4285.884 kb on - strand, within HGI48_RS19100 at 4285.884 kb on - strand, within HGI48_RS19100 at 4285.884 kb on - strand at 4285.887 kb on + strand, within HGI48_RS19100 at 4285.887 kb on + strand, within HGI48_RS19100 at 4285.938 kb on + strand, within HGI48_RS19100 at 4285.938 kb on + strand, within HGI48_RS19100 at 4285.938 kb on + strand, within HGI48_RS19100 at 4285.938 kb on + strand, within HGI48_RS19100 at 4285.938 kb on + strand, within HGI48_RS19100 at 4285.938 kb on + strand, within HGI48_RS19100 at 4285.938 kb on + strand, within HGI48_RS19100 at 4285.938 kb on + strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand at 4285.939 kb on - strand at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.940 kb on + strand, within HGI48_RS19100 at 4285.941 kb on - strand, within HGI48_RS19100 at 4285.941 kb on - strand, within HGI48_RS19100 at 4285.941 kb on - strand, within HGI48_RS19100 at 4285.941 kb on - strand, within HGI48_RS19100 at 4286.474 kb on + strand, within HGI48_RS19100 at 4286.474 kb on + strand, within HGI48_RS19100 at 4286.474 kb on + strand at 4286.474 kb on + strand, within HGI48_RS19100 at 4286.475 kb on - strand, within HGI48_RS19100 at 4286.475 kb on - strand, within HGI48_RS19100 at 4286.475 kb on - strand, within HGI48_RS19100 at 4286.475 kb on - strand, within HGI48_RS19100 at 4286.475 kb on - strand, within HGI48_RS19100 at 4286.475 kb on - strand, within HGI48_RS19100 at 4286.475 kb on - strand at 4286.475 kb on - strand, within HGI48_RS19100 at 4286.475 kb on - strand, within HGI48_RS19100 at 4286.537 kb on + strand at 4286.805 kb on - strand at 4286.805 kb on - strand at 4286.967 kb on + strand at 4286.967 kb on + strand at 4286.968 kb on - strand at 4287.079 kb on + strand at 4287.080 kb on - strand at 4287.080 kb on - strand at 4287.080 kb on - strand at 4287.198 kb on - strand at 4287.198 kb on - strand at 4287.249 kb on - strand at 4287.306 kb on + strand at 4287.311 kb on + strand at 4287.311 kb on + strand at 4287.311 kb on + strand at 4287.311 kb on + strand at 4287.312 kb on - strand at 4287.312 kb on - strand at 4287.312 kb on - strand at 4287.320 kb on + strand at 4287.428 kb on + strand at 4287.428 kb on + strand at 4287.428 kb on + strand at 4287.429 kb on - strand at 4287.540 kb on + strand at 4287.559 kb on - strand at 4287.653 kb on + strand at 4287.653 kb on + strand at 4287.653 kb on + strand at 4287.657 kb on - strand at 4287.757 kb on + strand at 4287.757 kb on + strand, within HGI48_RS19105 at 4287.758 kb on - strand, within HGI48_RS19105 at 4287.814 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,284,470 + HGI48_RS19090 0.79 -2.9 4,284,497 - HGI48_RS19090 0.82 -2.9 4,284,497 - HGI48_RS19090 0.82 -0.9 4,284,750 + +1.0 4,284,750 + -0.4 4,284,750 + +0.6 4,284,750 + +0.6 4,284,750 + -0.9 4,284,751 - -0.4 4,284,751 - -1.3 4,284,751 - -1.0 4,284,751 - +0.3 4,284,752 + +0.3 4,284,752 + -0.2 4,284,753 - +1.4 4,284,753 - -0.8 4,284,753 - -0.2 4,284,796 + HGI48_RS19095 0.17 +0.8 4,284,827 + HGI48_RS19095 0.26 -0.6 4,284,828 - HGI48_RS19095 0.26 +0.2 4,284,832 + HGI48_RS19095 0.27 +0.2 4,284,832 + HGI48_RS19095 0.27 +1.3 4,284,832 + HGI48_RS19095 0.27 -1.4 4,284,832 + HGI48_RS19095 0.27 -0.7 4,284,832 + HGI48_RS19095 0.27 -2.4 4,284,833 - HGI48_RS19095 0.27 -0.4 4,284,833 - HGI48_RS19095 0.27 +0.2 4,284,976 - HGI48_RS19095 0.69 +0.4 4,285,026 + HGI48_RS19095 0.83 +0.1 4,285,026 + -0.4 4,285,069 + -1.4 4,285,069 + +0.1 4,285,069 + -1.0 4,285,070 - -0.8 4,285,070 - +1.6 4,285,070 - -2.0 4,285,070 - -0.4 4,285,071 + -0.7 4,285,071 + +1.6 4,285,072 - +0.0 4,285,072 - +1.8 4,285,072 - +0.6 4,285,105 + -1.4 4,285,151 - -1.2 4,285,171 + -0.8 4,285,172 - +0.1 4,285,210 + +0.0 4,285,210 + +0.6 4,285,210 + +1.0 4,285,210 + -0.2 4,285,210 + -0.1 4,285,210 + -0.2 4,285,210 + +0.6 4,285,210 + +0.1 4,285,210 + -1.2 4,285,211 - -0.7 4,285,211 - +0.4 4,285,211 - +0.6 4,285,211 - -0.4 4,285,211 - +0.6 4,285,211 - -0.2 4,285,211 - +0.2 4,285,211 - +0.6 4,285,211 - +1.1 4,285,211 - +0.0 4,285,211 - +0.1 4,285,211 - +0.5 4,285,249 - +0.0 4,285,291 + -0.2 4,285,294 + +0.6 4,285,295 - -0.4 4,285,310 - +2.2 4,285,354 - -0.4 4,285,576 + -1.0 4,285,576 + HGI48_RS19100 0.16 +1.2 4,285,577 - +0.0 4,285,577 - HGI48_RS19100 0.16 -0.1 4,285,797 - HGI48_RS19100 0.29 -0.9 4,285,797 - HGI48_RS19100 0.29 +1.5 4,285,883 + HGI48_RS19100 0.35 -1.1 4,285,883 + HGI48_RS19100 0.35 -2.2 4,285,883 + HGI48_RS19100 0.35 +0.0 4,285,883 + HGI48_RS19100 0.35 -1.2 4,285,883 + HGI48_RS19100 0.35 -0.8 4,285,883 + HGI48_RS19100 0.35 -1.3 4,285,883 + HGI48_RS19100 0.35 -1.2 4,285,884 - HGI48_RS19100 0.35 -1.6 4,285,884 - HGI48_RS19100 0.35 +1.4 4,285,884 - HGI48_RS19100 0.35 -0.9 4,285,884 - HGI48_RS19100 0.35 +0.4 4,285,884 - HGI48_RS19100 0.35 -0.5 4,285,884 - HGI48_RS19100 0.35 -2.2 4,285,884 - HGI48_RS19100 0.35 +0.2 4,285,884 - -1.0 4,285,887 + HGI48_RS19100 0.35 +0.6 4,285,887 + HGI48_RS19100 0.35 -0.4 4,285,938 + HGI48_RS19100 0.38 +0.1 4,285,938 + HGI48_RS19100 0.38 -1.4 4,285,938 + HGI48_RS19100 0.38 -1.4 4,285,938 + HGI48_RS19100 0.38 +0.0 4,285,938 + HGI48_RS19100 0.38 -0.2 4,285,938 + HGI48_RS19100 0.38 -0.6 4,285,938 + HGI48_RS19100 0.38 +0.6 4,285,938 + HGI48_RS19100 0.38 -0.7 4,285,939 - HGI48_RS19100 0.38 -0.1 4,285,939 - HGI48_RS19100 0.38 -1.0 4,285,939 - HGI48_RS19100 0.38 -0.4 4,285,939 - HGI48_RS19100 0.38 -0.9 4,285,939 - HGI48_RS19100 0.38 -0.9 4,285,939 - HGI48_RS19100 0.38 -0.5 4,285,939 - HGI48_RS19100 0.38 -1.1 4,285,939 - HGI48_RS19100 0.38 -0.4 4,285,939 - HGI48_RS19100 0.38 +0.2 4,285,939 - HGI48_RS19100 0.38 +0.9 4,285,939 - HGI48_RS19100 0.38 -2.0 4,285,939 - +1.6 4,285,939 - +0.6 4,285,939 - HGI48_RS19100 0.38 -0.8 4,285,939 - HGI48_RS19100 0.38 -2.0 4,285,939 - HGI48_RS19100 0.38 -2.0 4,285,939 - HGI48_RS19100 0.38 -1.1 4,285,939 - HGI48_RS19100 0.38 -1.0 4,285,939 - HGI48_RS19100 0.38 +0.2 4,285,940 + HGI48_RS19100 0.38 -0.5 4,285,941 - HGI48_RS19100 0.38 -1.4 4,285,941 - HGI48_RS19100 0.38 -1.9 4,285,941 - HGI48_RS19100 0.38 -1.0 4,285,941 - HGI48_RS19100 0.38 +0.9 4,286,474 + HGI48_RS19100 0.70 -0.8 4,286,474 + HGI48_RS19100 0.70 +0.1 4,286,474 + +1.6 4,286,474 + HGI48_RS19100 0.70 -2.1 4,286,475 - HGI48_RS19100 0.70 -0.4 4,286,475 - HGI48_RS19100 0.70 -2.6 4,286,475 - HGI48_RS19100 0.70 -0.4 4,286,475 - HGI48_RS19100 0.70 -0.9 4,286,475 - HGI48_RS19100 0.70 +0.6 4,286,475 - HGI48_RS19100 0.70 -0.8 4,286,475 - +0.6 4,286,475 - HGI48_RS19100 0.70 -0.4 4,286,475 - HGI48_RS19100 0.70 +0.4 4,286,537 + +0.6 4,286,805 - -0.2 4,286,805 - +0.0 4,286,967 + -0.5 4,286,967 + +0.0 4,286,968 - -1.2 4,287,079 + -1.1 4,287,080 - +0.4 4,287,080 - -0.7 4,287,080 - +0.0 4,287,198 - -0.6 4,287,198 - -1.9 4,287,249 - +0.3 4,287,306 + -0.3 4,287,311 + -0.8 4,287,311 + +0.0 4,287,311 + -0.2 4,287,311 + -0.1 4,287,312 - -0.3 4,287,312 - -1.2 4,287,312 - -1.7 4,287,320 + -1.3 4,287,428 + -1.1 4,287,428 + +0.2 4,287,428 + -0.1 4,287,429 - +0.9 4,287,540 + +0.3 4,287,559 - -0.0 4,287,653 + -0.5 4,287,653 + +0.6 4,287,653 + -0.4 4,287,657 - +0.6 4,287,757 + +1.3 4,287,757 + HGI48_RS19105 0.17 -2.4 4,287,758 - HGI48_RS19105 0.17 +0.6 4,287,814 - -1.0
Or see this region's nucleotide sequence