Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19030 and HGI48_RS19035 are separated by 180 nucleotides HGI48_RS19035 and HGI48_RS19040 are separated by 135 nucleotides HGI48_RS19040 and HGI48_RS19045 are separated by 86 nucleotides
HGI48_RS19030: HGI48_RS19030 - tRNA-Gly, at 4,271,028 to 4,271,103
_RS19030
HGI48_RS19035: HGI48_RS19035 - oligoribonuclease, at 4,271,284 to 4,271,826
_RS19035
HGI48_RS19040: HGI48_RS19040 - small ribosomal subunit biogenesis GTPase RsgA, at 4,271,962 to 4,273,011
_RS19040
HGI48_RS19045: HGI48_RS19045 - phosphatidylserine decarboxylase, at 4,273,098 to 4,273,994
_RS19045
Position (kb)
4271
4272
4273
4274 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4270.973 kb on - strand at 4270.994 kb on + strand at 4270.995 kb on - strand at 4271.006 kb on + strand at 4271.017 kb on - strand at 4271.017 kb on - strand at 4271.023 kb on + strand at 4271.023 kb on + strand at 4271.024 kb on - strand at 4271.095 kb on + strand, within HGI48_RS19030 at 4271.095 kb on + strand, within HGI48_RS19030 at 4271.127 kb on + strand at 4271.154 kb on + strand at 4271.154 kb on + strand at 4271.237 kb on - strand at 4271.286 kb on - strand at 4271.296 kb on - strand at 4271.887 kb on - strand at 4271.896 kb on - strand at 4271.907 kb on + strand at 4271.907 kb on + strand at 4271.907 kb on + strand at 4271.907 kb on + strand at 4271.907 kb on + strand at 4271.908 kb on - strand at 4271.908 kb on - strand at 4271.908 kb on - strand at 4271.911 kb on - strand at 4271.911 kb on - strand at 4271.911 kb on - strand at 4271.911 kb on - strand at 4271.911 kb on - strand at 4271.911 kb on - strand at 4271.911 kb on - strand at 4271.912 kb on + strand at 4271.913 kb on - strand at 4273.016 kb on + strand at 4273.016 kb on + strand at 4273.016 kb on + strand at 4273.016 kb on + strand at 4273.016 kb on + strand at 4273.017 kb on - strand at 4273.034 kb on + strand at 4273.036 kb on + strand at 4273.036 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,270,973 - -0.4 4,270,994 + +0.9 4,270,995 - -0.3 4,271,006 + -0.3 4,271,017 - +1.3 4,271,017 - -1.7 4,271,023 + -0.6 4,271,023 + +0.5 4,271,024 - +0.3 4,271,095 + HGI48_RS19030 0.88 -0.4 4,271,095 + HGI48_RS19030 0.88 -0.6 4,271,127 + +0.6 4,271,154 + -1.4 4,271,154 + -1.0 4,271,237 - -1.3 4,271,286 - +0.1 4,271,296 - -1.7 4,271,887 - -3.6 4,271,896 - -0.0 4,271,907 + +1.2 4,271,907 + +0.7 4,271,907 + +0.6 4,271,907 + -0.4 4,271,907 + +0.0 4,271,908 - -0.5 4,271,908 - +1.4 4,271,908 - +0.2 4,271,911 - -1.1 4,271,911 - -0.9 4,271,911 - +0.4 4,271,911 - +0.6 4,271,911 - -0.4 4,271,911 - +0.2 4,271,911 - +0.6 4,271,912 + -0.4 4,271,913 - +2.2 4,273,016 + +0.0 4,273,016 + -1.2 4,273,016 + +0.0 4,273,016 + +0.3 4,273,016 + +1.8 4,273,017 - +0.4 4,273,034 + -1.0 4,273,036 + +1.6 4,273,036 + +0.6
Or see this region's nucleotide sequence