Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19020

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,268,282	+				-0.2
4,268,282	+				-0.6
4,268,283	-				-0.7
4,268,283	-				-0.0
4,268,283	-				-2.4
4,268,288	-				-1.7
4,268,288	-				-0.1
4,268,296	+				-0.0
4,268,296	+				-2.7
4,268,296	+				+0.2
4,268,296	+				-0.4
4,268,371	+				-0.8
4,268,371	+				+0.2
4,268,371	+				-2.0
4,268,371	+				+0.1
4,268,372	-				-0.8
4,268,372	-				-0.8
4,268,372	-				-0.4
4,268,372	-				+0.3
4,268,414	+				-1.9
4,268,429	-				-0.3
4,268,429	-				+0.9
4,268,429	-				-0.4
4,268,441	+				-0.4
4,268,441	+				-0.4
4,268,441	+				+0.1
4,268,442	-				-1.0
4,268,442	-				-1.2
4,268,442	-				+0.5
4,268,464	-				-1.3
4,268,482	-				+1.3
4,268,528	+				+1.2
4,268,528	+		HGI48_RS19015	0.13	+0.0
4,268,529	-		HGI48_RS19015	0.13	+0.6
4,268,529	-				+1.0
4,268,529	-		HGI48_RS19015	0.13	+0.0
4,268,529	-		HGI48_RS19015	0.13	-0.0
4,268,529	-		HGI48_RS19015	0.13	-0.8
4,268,529	-		HGI48_RS19015	0.13	-0.2
4,268,536	-		HGI48_RS19015	0.14	+0.6
4,268,556	+				+0.6
4,268,574	-		HGI48_RS19015	0.19	-0.2
4,268,583	+		HGI48_RS19015	0.20	-0.4
4,268,584	-		HGI48_RS19015	0.20	-0.7
4,268,586	+		HGI48_RS19015	0.21	+0.0
4,268,586	+		HGI48_RS19015	0.21	+0.4
4,268,586	+		HGI48_RS19015	0.21	+1.6
4,268,587	-		HGI48_RS19015	0.21	-0.2
4,268,587	-		HGI48_RS19015	0.21	+0.0
4,268,587	-		HGI48_RS19015	0.21	+0.2
4,268,587	-				-1.0
4,268,594	+				-0.4
4,268,698	-		HGI48_RS19015	0.36	+0.3
4,268,698	-		HGI48_RS19015	0.36	-0.2
4,268,698	-		HGI48_RS19015	0.36	+0.3
4,268,698	-		HGI48_RS19015	0.36	+0.2
4,268,699	+		HGI48_RS19015	0.36	-1.0
4,268,707	+		HGI48_RS19015	0.37	-0.1
4,268,707	+				+0.0
4,268,707	+		HGI48_RS19015	0.37	-2.0
4,268,707	+		HGI48_RS19015	0.37	-0.4
4,268,707	+		HGI48_RS19015	0.37	-2.0
4,268,707	+		HGI48_RS19015	0.37	-0.6
4,268,707	+		HGI48_RS19015	0.37	-0.2
4,268,707	+		HGI48_RS19015	0.37	-0.3
4,268,707	+		HGI48_RS19015	0.37	+0.2
4,268,708	-		HGI48_RS19015	0.37	+0.4
4,268,708	-		HGI48_RS19015	0.37	-1.0
4,268,708	-		HGI48_RS19015	0.37	-1.4
4,268,708	-		HGI48_RS19015	0.37	+0.6
4,268,708	-		HGI48_RS19015	0.37	-0.5
4,268,708	-		HGI48_RS19015	0.37	-1.0
4,268,708	-				+1.0
4,268,708	-		HGI48_RS19015	0.37	-0.6
4,268,708	-		HGI48_RS19015	0.37	-0.4
4,268,708	-				+1.2
4,268,708	-		HGI48_RS19015	0.37	-0.2
4,268,708	-		HGI48_RS19015	0.37	-0.2
4,268,708	-		HGI48_RS19015	0.37	-0.8
4,268,709	+		HGI48_RS19015	0.37	-1.1
4,268,709	+		HGI48_RS19015	0.37	+0.2
4,268,710	-		HGI48_RS19015	0.37	-0.6
4,268,724	-				+1.6
4,268,749	-		HGI48_RS19015	0.43	+0.6
4,268,749	-		HGI48_RS19015	0.43	-0.1
4,268,752	+		HGI48_RS19015	0.43	+1.1
4,268,752	+		HGI48_RS19015	0.43	-1.1
4,268,752	+		HGI48_RS19015	0.43	-1.4
4,268,758	-		HGI48_RS19015	0.44	-0.3
4,268,776	+		HGI48_RS19015	0.46	+0.1
4,268,776	+		HGI48_RS19015	0.46	-1.2
4,268,776	+		HGI48_RS19015	0.46	+0.8
4,268,776	+		HGI48_RS19015	0.46	+0.3
4,268,777	-		HGI48_RS19015	0.46	+1.2
4,268,777	-		HGI48_RS19015	0.46	-0.4
4,268,777	-		HGI48_RS19015	0.46	-0.2
4,268,777	-		HGI48_RS19015	0.46	-1.1
4,268,835	+		HGI48_RS19015	0.54	-0.2
4,268,835	+		HGI48_RS19015	0.54	-0.2
4,268,835	+		HGI48_RS19015	0.54	-0.1
4,268,835	+		HGI48_RS19015	0.54	+1.1
4,268,835	+		HGI48_RS19015	0.54	-0.4
4,268,835	+		HGI48_RS19015	0.54	+0.1
4,268,836	-		HGI48_RS19015	0.54	-0.8
4,268,836	-		HGI48_RS19015	0.54	+0.4
4,268,836	-		HGI48_RS19015	0.54	+0.5
4,268,836	-				+1.0
4,268,836	-		HGI48_RS19015	0.54	+1.6
4,268,844	-		HGI48_RS19015	0.55	-1.7
4,268,878	+				+2.4
4,268,933	+		HGI48_RS19015	0.67	-1.4
4,268,933	+		HGI48_RS19015	0.67	+1.2
4,268,933	+		HGI48_RS19015	0.67	+0.6
4,268,933	+		HGI48_RS19015	0.67	+0.8
4,268,933	+		HGI48_RS19015	0.67	+0.2
4,269,020	-				-1.0
4,269,043	-		HGI48_RS19015	0.82	-0.1
4,269,075	+		HGI48_RS19015	0.86	+0.1
4,269,101	+		HGI48_RS19015	0.90	-0.4
4,269,106	+				+0.5
4,269,106	+				+0.6
4,269,107	-				-1.4
4,269,107	-				-0.2
4,269,107	-				-0.4
4,269,175	+				+0.5
4,269,176	-				-1.4
4,269,188	+				-1.4
4,269,195	+				+2.6
4,269,263	-				+1.1
4,269,263	-				+0.3
4,269,263	-				-1.2
4,269,283	+				+0.6
4,269,294	+				-1.0
4,269,294	+				-1.7
4,269,294	+				-1.4
4,269,294	+				+0.6
4,269,294	+				+0.5
4,269,294	+				+1.3
4,269,294	+				-2.5
4,269,294	+				-0.6
4,269,295	-				-0.2
4,269,295	-				-0.4
4,269,295	-				-0.3
4,269,295	-				-0.4
4,269,363	+		HGI48_RS19020	0.16	+0.2
4,269,363	+				+1.6
4,269,364	-		HGI48_RS19020	0.16	-0.4
4,269,364	-		HGI48_RS19020	0.16	+0.4
4,269,364	-		HGI48_RS19020	0.16	+0.1
4,269,364	-		HGI48_RS19020	0.16	+0.8
4,269,369	+		HGI48_RS19020	0.17	-1.1
4,269,370	-		HGI48_RS19020	0.17	+0.0
4,269,370	-		HGI48_RS19020	0.17	-1.2
4,269,428	-		HGI48_RS19020	0.25	+0.9
4,269,460	+				-1.0
4,269,521	+				+0.6
4,269,521	+		HGI48_RS19020	0.39	+1.2
4,269,522	-		HGI48_RS19020	0.39	-1.2
4,269,522	-		HGI48_RS19020	0.39	-1.0
4,269,537	+		HGI48_RS19020	0.41	-1.4
4,269,537	+				+0.6
4,269,537	+		HGI48_RS19020	0.41	-0.4
4,269,537	+		HGI48_RS19020	0.41	+0.8
4,269,540	+		HGI48_RS19020	0.42	-2.3
4,269,540	+		HGI48_RS19020	0.42	-0.2
4,269,541	-		HGI48_RS19020	0.42	-1.7
4,269,574	+		HGI48_RS19020	0.47	-0.9
4,269,574	+		HGI48_RS19020	0.47	+0.6
4,269,574	+		HGI48_RS19020	0.47	-1.4
4,269,574	+		HGI48_RS19020	0.47	+0.8
4,269,574	+		HGI48_RS19020	0.47	-0.4
4,269,607	-		HGI48_RS19020	0.52	+0.2
4,269,670	+		HGI48_RS19020	0.61	-0.8
4,269,670	+		HGI48_RS19020	0.61	+0.1
4,269,670	+		HGI48_RS19020	0.61	-1.7
4,269,670	+		HGI48_RS19020	0.61	-1.0
4,269,670	+		HGI48_RS19020	0.61	-1.5
4,269,671	-		HGI48_RS19020	0.61	-1.7
4,269,671	-				+0.0
4,269,690	+		HGI48_RS19020	0.64	+0.2
4,269,719	-		HGI48_RS19020	0.68	-0.6
4,269,721	+		HGI48_RS19020	0.69	+0.3
4,269,722	-		HGI48_RS19020	0.69	-0.6
4,269,737	+		HGI48_RS19020	0.71	-0.1
4,269,737	+		HGI48_RS19020	0.71	+0.4
4,269,738	-		HGI48_RS19020	0.71	+0.9
4,269,781	-		HGI48_RS19020	0.78	+0.3
4,269,852	+				+1.2
4,269,852	+		HGI48_RS19020	0.88	-2.9
4,269,864	+				+0.5
4,269,864	+				-0.1
4,269,875	+				+0.0
4,269,875	+				+0.6
4,269,876	-				-0.6
4,269,939	-				-1.7
4,269,939	-				-0.4
4,269,939	-				+0.6
4,269,957	+				-0.4
4,269,957	+				+1.8
4,269,957	+				-1.9
4,269,957	+				+0.7
4,269,957	+				-0.2
4,269,957	+				-0.1
4,269,958	-				-0.7
4,269,958	-				-0.4
4,269,961	+				-1.7
4,269,961	+				-0.4
4,269,963	+				-2.0
4,269,963	+				+0.0
4,269,963	+				+0.9
4,269,963	+				+0.0
4,269,964	-				-0.4
4,270,033	+				-1.5
4,270,050	+				-0.0
4,270,053	+				+1.6
4,270,054	-				+0.4
4,270,067	+				-0.4
4,270,068	-				-0.3
4,270,072	+				-2.4
4,270,128	+				-2.0
4,270,128	+				-0.1
4,270,129	-				-2.2
4,270,163	-				-1.0
4,270,212	+				+1.0
4,270,212	+				-1.7
4,270,212	+				-0.7
4,270,212	+				-0.6
4,270,216	+				+0.3
4,270,217	-				+0.4
4,270,225	-				-0.3
4,270,245	+				+0.3
4,270,246	-				-0.4
4,270,246	-				-0.1
4,270,266	+				-0.2
4,270,267	-				-1.7
4,270,324	+		HGI48_RS19025	0.14	+0.9
4,270,331	-		HGI48_RS19025	0.15	-0.1
4,270,333	-		HGI48_RS19025	0.15	-1.2
4,270,333	-				+1.3
4,270,386	+		HGI48_RS19025	0.25	-0.4
4,270,387	-				-1.0
4,270,526	-		HGI48_RS19025	0.49	+1.2
4,270,526	-		HGI48_RS19025	0.49	-1.0
4,270,526	-		HGI48_RS19025	0.49	-0.7
4,270,526	-		HGI48_RS19025	0.49	+0.6
4,270,579	+		HGI48_RS19025	0.58	-1.7
4,270,582	+		HGI48_RS19025	0.59	-1.4
4,270,582	+		HGI48_RS19025	0.59	+1.0
4,270,842	+				+0.6
4,270,842	+				-0.3
4,270,930	-				-0.4
4,270,930	-				+0.2