Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS17935 and HGI48_RS17940 are separated by 97 nucleotides HGI48_RS17940 and HGI48_RS17945 are separated by 27 nucleotides HGI48_RS17945 and HGI48_RS17950 are separated by 16 nucleotides
HGI48_RS17935: HGI48_RS17935 - preprotein translocase subunit SecA, at 4,023,298 to 4,025,991
_RS17935
HGI48_RS17940: HGI48_RS17940 - secA regulator SecM, at 4,026,089 to 4,026,589
_RS17940
HGI48_RS17945: HGI48_RS17945 - DUF721 domain-containing protein, at 4,026,617 to 4,027,138
_RS17945
HGI48_RS17950: HGI48_RS17950 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 4,027,155 to 4,028,072
_RS17950
Position (kb)
4026
4027 Strain fitness (log2 ratio)
-1
0
1 at 4026.054 kb on - strand at 4026.054 kb on - strand at 4026.243 kb on - strand, within HGI48_RS17940 at 4026.243 kb on - strand, within HGI48_RS17940 at 4026.243 kb on - strand, within HGI48_RS17940 at 4026.243 kb on - strand, within HGI48_RS17940 at 4026.243 kb on - strand, within HGI48_RS17940 at 4026.255 kb on - strand, within HGI48_RS17940 at 4026.299 kb on - strand, within HGI48_RS17940 at 4026.329 kb on - strand, within HGI48_RS17940 at 4026.418 kb on - strand, within HGI48_RS17940 at 4026.418 kb on - strand, within HGI48_RS17940 at 4026.554 kb on - strand at 4027.071 kb on + strand at 4027.083 kb on + strand, within HGI48_RS17945 at 4027.136 kb on + strand at 4027.136 kb on + strand at 4027.136 kb on + strand at 4027.136 kb on + strand at 4027.137 kb on - strand at 4027.137 kb on - strand at 4027.137 kb on - strand at 4027.137 kb on - strand at 4027.137 kb on - strand at 4027.169 kb on + strand at 4027.189 kb on - strand at 4027.189 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,026,054 - -0.1 4,026,054 - -0.5 4,026,243 - HGI48_RS17940 0.31 -0.5 4,026,243 - HGI48_RS17940 0.31 +0.0 4,026,243 - HGI48_RS17940 0.31 -0.2 4,026,243 - HGI48_RS17940 0.31 -0.8 4,026,243 - HGI48_RS17940 0.31 -0.9 4,026,255 - HGI48_RS17940 0.33 +0.7 4,026,299 - HGI48_RS17940 0.42 -1.6 4,026,329 - HGI48_RS17940 0.48 +0.2 4,026,418 - HGI48_RS17940 0.66 -0.1 4,026,418 - HGI48_RS17940 0.66 +0.1 4,026,554 - -0.1 4,027,071 + +0.5 4,027,083 + HGI48_RS17945 0.89 -0.5 4,027,136 + +0.0 4,027,136 + +0.5 4,027,136 + -0.5 4,027,136 + -0.5 4,027,137 - +0.8 4,027,137 - -0.5 4,027,137 - -0.5 4,027,137 - +0.5 4,027,137 - -0.7 4,027,169 + -0.6 4,027,189 - -0.5 4,027,189 - +0.3
Or see this region's nucleotide sequence