Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17370

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,887,144	+		HGI48_RS17355	0.90	-0.8
3,887,145	-				-0.7
3,887,156	+				-0.5
3,887,156	+				+0.5
3,887,157	-				+0.5
3,887,157	-				+0.1
3,887,242	+		HGI48_RS17360	0.15	-2.5
3,887,242	+		HGI48_RS17360	0.15	-0.7
3,887,242	+				+1.1
3,887,242	+		HGI48_RS17360	0.15	-0.2
3,887,242	+				-1.1
3,887,242	+		HGI48_RS17360	0.15	-0.8
3,887,243	-		HGI48_RS17360	0.16	-0.4
3,887,243	-		HGI48_RS17360	0.16	-1.2
3,887,245	-		HGI48_RS17360	0.16	+0.4
3,887,245	-		HGI48_RS17360	0.16	-0.7
3,887,245	-		HGI48_RS17360	0.16	-0.3
3,887,298	+		HGI48_RS17360	0.35	-0.1
3,887,298	+		HGI48_RS17360	0.35	-0.0
3,887,298	+		HGI48_RS17360	0.35	+1.8
3,887,299	-		HGI48_RS17360	0.35	+0.1
3,887,433	+		HGI48_RS17360	0.81	+0.3
3,887,433	+		HGI48_RS17360	0.81	+0.5
3,887,434	-		HGI48_RS17360	0.81	+0.3
3,887,434	-		HGI48_RS17360	0.81	+0.1
3,887,491	+				-0.8
3,887,491	+				-1.1
3,887,492	-				-0.3
3,887,492	-				-1.1
3,887,492	-				-1.3
3,887,492	-				+0.2
3,887,492	-				+0.2
3,887,502	+				-1.1
3,887,502	+				-0.7
3,887,503	-				-1.1
3,887,506	+				-0.7
3,887,507	-				+0.5
3,887,569	+				-1.3
3,887,783	+		HGI48_RS17365	0.42	+0.4
3,887,783	+		HGI48_RS17365	0.42	+0.2
3,887,895	+		HGI48_RS17365	0.61	-1.5
3,887,903	+		HGI48_RS17365	0.62	-0.8
3,887,903	+		HGI48_RS17365	0.62	+1.9
3,887,903	+		HGI48_RS17365	0.62	+1.0
3,887,904	-		HGI48_RS17365	0.62	-1.3
3,887,904	-		HGI48_RS17365	0.62	+0.4
3,887,904	-		HGI48_RS17365	0.62	-1.3
3,887,904	-				+0.9
3,887,904	-		HGI48_RS17365	0.62	+1.0
3,888,125	+				-0.5
3,888,125	+				-0.3
3,888,125	+				-0.5
3,888,125	+				+1.1
3,888,126	-				-2.4
3,888,126	-				+2.2
3,888,126	-				-0.8
3,888,126	-				-3.0
3,888,126	-				-0.3
3,888,140	+				-0.5
3,888,141	-				-0.5
3,888,147	+				-0.8
3,888,147	+				+0.1
3,888,148	-				-1.8
3,888,184	-				-0.5
3,888,234	+		HGI48_RS17370	0.10	-0.8
3,888,235	-		HGI48_RS17370	0.10	-1.1
3,888,235	-		HGI48_RS17370	0.10	-1.8
3,888,700	-		HGI48_RS17370	0.51	-0.8
3,888,776	+		HGI48_RS17370	0.58	-0.5
3,888,776	+		HGI48_RS17370	0.58	-1.7
3,888,780	+		HGI48_RS17370	0.58	+0.5
3,888,781	-		HGI48_RS17370	0.58	-0.3
3,888,781	-		HGI48_RS17370	0.58	-0.1
3,888,781	-		HGI48_RS17370	0.58	+0.3
3,888,879	+		HGI48_RS17370	0.67	-1.8
3,888,898	-		HGI48_RS17370	0.68	+0.5
3,888,988	-		HGI48_RS17370	0.76	-0.5
3,888,989	+		HGI48_RS17370	0.76	+0.1
3,888,989	+		HGI48_RS17370	0.76	+0.1
3,888,989	+		HGI48_RS17370	0.76	+0.5
3,888,989	+		HGI48_RS17370	0.76	+0.2
3,888,989	+		HGI48_RS17370	0.76	+0.1
3,888,990	-		HGI48_RS17370	0.76	-0.5
3,888,990	-		HGI48_RS17370	0.76	-1.0
3,888,990	-		HGI48_RS17370	0.76	+0.2
3,888,990	-				+3.3
3,888,990	-		HGI48_RS17370	0.76	-0.3
3,888,990	-		HGI48_RS17370	0.76	+0.8
3,888,990	-		HGI48_RS17370	0.76	-0.1
3,888,990	-		HGI48_RS17370	0.76	-0.3
3,889,002	+		HGI48_RS17370	0.77	-0.7
3,889,002	+		HGI48_RS17370	0.77	-0.5
3,889,002	+				-0.1
3,889,003	-		HGI48_RS17370	0.77	-0.2
3,889,168	-				+0.5
3,889,168	-				+1.1
3,889,334	+				-1.8
3,889,335	-				-0.0
3,889,367	+				-1.5
3,889,367	+				-0.3
3,889,367	+				-0.5
3,889,367	+				-0.5
3,889,368	-				-2.1
3,889,368	-				+0.1
3,889,368	-				+0.5
3,889,373	+				-0.2
3,889,373	+				+2.1
3,889,373	+				-1.1
3,889,373	+				-2.0
3,889,374	-				-0.7
3,889,374	-				-2.7
3,889,444	+				-0.4
3,889,445	-				-1.0
3,889,445	-				+0.5
3,889,462	+				+1.1
3,889,463	-				-0.3
3,889,470	+		HGI48_RS17375	0.12	+0.3
3,889,470	+		HGI48_RS17375	0.12	-0.7
3,889,471	-		HGI48_RS17375	0.13	-2.7
3,889,571	-				-0.6
3,889,670	+				-0.3
3,889,720	+		HGI48_RS17380	0.18	-0.0
3,889,753	+		HGI48_RS17380	0.25	-0.6
3,889,753	+				+0.9
3,889,754	-		HGI48_RS17380	0.25	-1.4
3,889,754	-		HGI48_RS17380	0.25	-1.1
3,889,754	-		HGI48_RS17380	0.25	-1.1
3,889,754	-		HGI48_RS17380	0.25	+1.1
3,889,754	-		HGI48_RS17380	0.25	-0.8
3,889,796	+		HGI48_RS17380	0.35	-1.3
3,889,796	+		HGI48_RS17380	0.35	-0.8
3,889,796	+		HGI48_RS17380	0.35	-0.3
3,889,797	-		HGI48_RS17380	0.35	-0.1
3,889,797	-		HGI48_RS17380	0.35	-0.8
3,889,806	+		HGI48_RS17380	0.37	-0.2
3,889,806	+		HGI48_RS17380	0.37	-0.8
3,889,806	+		HGI48_RS17380	0.37	-0.7
3,889,806	+		HGI48_RS17380	0.37	-0.7
3,889,806	+		HGI48_RS17380	0.37	-0.3
3,889,807	-				+0.9
3,889,807	-		HGI48_RS17380	0.37	-0.7
3,889,984	+				+1.2
3,889,985	-		HGI48_RS17380	0.76	-1.7
3,890,038	+				+0.5
3,890,106	+				+0.3
3,890,106	+				-0.9
3,890,107	-				-0.7