Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16690

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,738,408	+		HGI48_RS16680	0.68	+0.1
3,738,408	+		HGI48_RS16680	0.68	+1.2
3,738,487	+		HGI48_RS16680	0.83	-0.6
3,738,487	+		HGI48_RS16680	0.83	+0.7
3,738,487	+		HGI48_RS16680	0.83	-0.1
3,738,487	+				-1.2
3,738,488	-		HGI48_RS16680	0.83	+0.1
3,738,595	+				+0.1
3,738,595	+				+1.4
3,738,595	+				+0.3
3,738,596	-				-0.1
3,738,596	-				-0.9
3,738,596	-				+0.6
3,738,607	+				-1.7
3,738,615	+				+0.6
3,738,616	-				-3.0
3,738,616	-				+0.3
3,738,616	-				-0.6
3,738,616	-				+0.1
3,738,628	-				+0.4
3,738,712	+		HGI48_RS16685	0.14	-0.1
3,738,712	+		HGI48_RS16685	0.14	-1.2
3,738,713	-		HGI48_RS16685	0.14	+0.9
3,738,796	+		HGI48_RS16685	0.26	-0.2
3,738,797	-		HGI48_RS16685	0.26	-3.6
3,738,811	-		HGI48_RS16685	0.28	+0.4
3,738,811	-		HGI48_RS16685	0.28	-2.2
3,738,811	-		HGI48_RS16685	0.28	-0.3
3,738,811	-		HGI48_RS16685	0.28	+0.3
3,738,813	+		HGI48_RS16685	0.29	+0.6
3,738,813	+				+0.4
3,738,814	-		HGI48_RS16685	0.29	+0.4
3,738,814	-		HGI48_RS16685	0.29	+1.4
3,738,855	+		HGI48_RS16685	0.35	-2.7
3,738,936	+		HGI48_RS16685	0.46	+0.8
3,738,942	+		HGI48_RS16685	0.47	-1.2
3,738,942	+		HGI48_RS16685	0.47	-0.4
3,738,942	+		HGI48_RS16685	0.47	-1.9
3,738,943	-		HGI48_RS16685	0.47	+0.1
3,738,943	-		HGI48_RS16685	0.47	-1.6
3,738,943	-		HGI48_RS16685	0.47	-2.6
3,738,996	+		HGI48_RS16685	0.55	-0.3
3,738,996	+		HGI48_RS16685	0.55	+0.1
3,738,997	-		HGI48_RS16685	0.55	+0.4
3,738,997	-		HGI48_RS16685	0.55	+0.4
3,739,251	-				-0.5
3,739,292	-				-0.1
3,739,384	+				+0.4
3,739,384	+		HGI48_RS16690	0.13	-0.1
3,739,384	+		HGI48_RS16690	0.13	-1.0
3,739,385	-		HGI48_RS16690	0.13	+0.6
3,739,385	-				+0.9
3,739,404	-		HGI48_RS16690	0.16	+0.3
3,739,404	-		HGI48_RS16690	0.16	+0.2
3,739,404	-		HGI48_RS16690	0.16	-0.6
3,739,536	+		HGI48_RS16690	0.38	-0.4
3,739,537	-				+1.8
3,739,680	+				+0.4
3,739,680	+		HGI48_RS16690	0.61	-0.2
3,739,680	+		HGI48_RS16690	0.61	-0.6
3,739,680	+				-1.1
3,739,681	-		HGI48_RS16690	0.61	-0.9
3,739,917	+				-0.6
3,739,918	-				+0.4
3,739,929	+				-0.1
3,739,930	-				+0.7
3,739,930	-				-0.7
3,739,930	-				-1.4
3,739,992	+				+1.2
3,739,992	+				-1.1
3,739,993	-				+0.4
3,739,996	-				+0.6
3,739,996	-				-0.3
3,739,996	-				+0.4
3,739,996	-				-1.1
3,739,996	-				+0.2
3,739,996	-				+0.4
3,739,996	-				+0.0
3,740,001	+				-0.3
3,740,001	+				+1.1
3,740,001	+				+0.1
3,740,005	+				+0.6
3,740,065	+				+0.3
3,740,078	+				-1.6
3,740,078	+				+0.8
3,740,078	+				+0.4
3,740,079	-				-0.6
3,740,080	+				+0.0
3,740,080	+				+1.3
3,740,080	+				-2.3
3,740,080	+				-0.7
3,740,081	-				-0.1
3,740,081	-				-1.6
3,740,081	-				-0.4
3,740,081	-				+0.1
3,740,081	-				+0.2
3,740,082	+				-0.3
3,740,082	+				-0.9
3,740,082	+				+0.1
3,740,082	+				-1.4
3,740,082	+				-1.4
3,740,082	+				-0.4
3,740,082	+				-0.2
3,740,083	-				+0.9
3,740,083	-				-0.8
3,740,083	-				-2.7
3,740,083	-				-1.1
3,740,083	-				+0.1
3,740,083	-				-0.5
3,740,083	-				-0.1
3,740,083	-				-1.1
3,740,083	-				+0.5
3,740,259	+		HGI48_RS16695	0.12	-0.0
3,740,280	+		HGI48_RS16695	0.13	-0.8
3,740,280	+		HGI48_RS16695	0.13	+1.3
3,740,308	-				-1.1
3,740,475	-		HGI48_RS16695	0.30	-0.2
3,740,475	-				+2.0
3,740,475	-				+0.4
3,740,475	-		HGI48_RS16695	0.30	+0.2
3,740,475	-		HGI48_RS16695	0.30	-0.0
3,740,493	+		HGI48_RS16695	0.32	-1.1
3,740,493	+		HGI48_RS16695	0.32	-0.0
3,740,493	+		HGI48_RS16695	0.32	-0.2
3,740,494	-		HGI48_RS16695	0.32	-1.5
3,740,533	+		HGI48_RS16695	0.35	-2.1
3,740,533	+		HGI48_RS16695	0.35	-2.1
3,740,533	+		HGI48_RS16695	0.35	-1.9
3,740,534	-				-0.1
3,740,712	+		HGI48_RS16695	0.51	-2.1
3,740,712	+				+0.4
3,740,712	+		HGI48_RS16695	0.51	+0.7
3,740,712	+		HGI48_RS16695	0.51	-0.4
3,740,712	+		HGI48_RS16695	0.51	-0.8
3,740,712	+		HGI48_RS16695	0.51	-1.3
3,740,712	+		HGI48_RS16695	0.51	-0.0
3,740,712	+		HGI48_RS16695	0.51	-1.1
3,740,712	+		HGI48_RS16695	0.51	-0.4
3,740,712	+		HGI48_RS16695	0.51	-2.1
3,740,712	+		HGI48_RS16695	0.51	-1.0
3,740,712	+		HGI48_RS16695	0.51	-1.0
3,740,712	+		HGI48_RS16695	0.51	+0.7
3,740,712	+		HGI48_RS16695	0.51	-0.4
3,740,712	+		HGI48_RS16695	0.51	+0.6
3,740,712	+		HGI48_RS16695	0.51	+0.0
3,740,713	-		HGI48_RS16695	0.51	-1.3
3,740,713	-		HGI48_RS16695	0.51	-0.8
3,740,713	-		HGI48_RS16695	0.51	-1.0
3,740,713	-		HGI48_RS16695	0.51	-1.1
3,740,713	-		HGI48_RS16695	0.51	+0.9
3,740,713	-		HGI48_RS16695	0.51	+0.9
3,740,713	-		HGI48_RS16695	0.51	+0.1
3,740,713	-		HGI48_RS16695	0.51	-0.7
3,740,713	-		HGI48_RS16695	0.51	+0.9
3,740,713	-		HGI48_RS16695	0.51	-0.2
3,740,733	+				+1.7
3,740,733	+		HGI48_RS16695	0.53	-1.3
3,740,833	-		HGI48_RS16695	0.61	-0.3
3,740,860	-		HGI48_RS16695	0.64	-0.7
3,740,897	+		HGI48_RS16695	0.67	-2.6
3,740,910	+		HGI48_RS16695	0.68	-1.4
3,740,910	+		HGI48_RS16695	0.68	-1.9