Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS15610 and HGI48_RS15615 are separated by 97 nucleotides HGI48_RS15615 and HGI48_RS15620 are separated by 11 nucleotides HGI48_RS15620 and HGI48_RS15625 are separated by 1 nucleotides HGI48_RS15625 and HGI48_RS15630 are separated by 77 nucleotides HGI48_RS15630 and HGI48_RS15635 are separated by 97 nucleotides
HGI48_RS15610: HGI48_RS15610 - aminopeptidase PepB, at 3,509,591 to 3,510,886
_RS15610
HGI48_RS15615: HGI48_RS15615 - Fe-S cluster assembly protein IscX, at 3,510,984 to 3,511,184
_RS15615
HGI48_RS15620: HGI48_RS15620 - ISC system 2Fe-2S type ferredoxin, at 3,511,196 to 3,511,531
_RS15620
HGI48_RS15625: HGI48_RS15625 - Fe-S protein assembly chaperone HscA, at 3,511,533 to 3,513,383
_RS15625
HGI48_RS15630: HGI48_RS15630 - co-chaperone HscB, at 3,513,461 to 3,513,979
_RS15630
HGI48_RS15635: HGI48_RS15635 - iron-sulfur cluster assembly protein IscA, at 3,514,077 to 3,514,400
_RS15635
Position (kb)
3511
3512
3513
3514 Strain fitness (log2 ratio)
-2
-1
0
1 at 3510.572 kb on + strand, within HGI48_RS15610 at 3510.715 kb on + strand, within HGI48_RS15610 at 3510.715 kb on + strand, within HGI48_RS15610 at 3510.716 kb on - strand, within HGI48_RS15610 at 3510.716 kb on - strand, within HGI48_RS15610 at 3510.790 kb on + strand at 3510.790 kb on + strand at 3510.790 kb on + strand at 3510.791 kb on - strand at 3510.791 kb on - strand at 3510.887 kb on - strand at 3510.892 kb on + strand at 3510.892 kb on + strand at 3510.892 kb on + strand at 3510.892 kb on + strand at 3510.892 kb on + strand at 3510.893 kb on - strand at 3510.893 kb on - strand at 3510.893 kb on - strand at 3510.893 kb on - strand at 3510.913 kb on - strand at 3510.925 kb on + strand at 3510.937 kb on - strand at 3510.937 kb on - strand at 3511.089 kb on + strand at 3511.123 kb on + strand, within HGI48_RS15615 at 3511.123 kb on + strand, within HGI48_RS15615 at 3511.124 kb on - strand, within HGI48_RS15615 at 3511.139 kb on - strand, within HGI48_RS15615 at 3511.139 kb on - strand, within HGI48_RS15615 at 3511.185 kb on - strand at 3511.190 kb on - strand at 3511.535 kb on - strand at 3511.620 kb on + strand at 3513.529 kb on + strand, within HGI48_RS15630 at 3513.769 kb on + strand, within HGI48_RS15630 at 3513.770 kb on - strand, within HGI48_RS15630 at 3513.772 kb on - strand, within HGI48_RS15630 at 3513.942 kb on + strand at 3514.024 kb on + strand at 3514.086 kb on - strand at 3514.190 kb on - strand, within HGI48_RS15635
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,510,572 + HGI48_RS15610 0.76 -0.6 3,510,715 + HGI48_RS15610 0.87 -1.2 3,510,715 + HGI48_RS15610 0.87 -0.5 3,510,716 - HGI48_RS15610 0.87 -0.9 3,510,716 - HGI48_RS15610 0.87 +0.4 3,510,790 + -2.0 3,510,790 + -1.5 3,510,790 + -0.4 3,510,791 - -1.5 3,510,791 - -0.4 3,510,887 - -0.2 3,510,892 + -0.3 3,510,892 + +0.0 3,510,892 + -0.2 3,510,892 + +0.4 3,510,892 + -0.5 3,510,893 - -0.2 3,510,893 - -2.0 3,510,893 - +0.4 3,510,893 - -0.6 3,510,913 - -2.2 3,510,925 + +0.1 3,510,937 - -0.5 3,510,937 - -1.2 3,511,089 + -0.6 3,511,123 + HGI48_RS15615 0.69 +0.6 3,511,123 + HGI48_RS15615 0.69 -0.3 3,511,124 - HGI48_RS15615 0.70 -1.2 3,511,139 - HGI48_RS15615 0.77 -1.0 3,511,139 - HGI48_RS15615 0.77 -0.6 3,511,185 - -0.5 3,511,190 - +0.9 3,511,535 - +1.1 3,511,620 + +0.4 3,513,529 + HGI48_RS15630 0.13 -1.5 3,513,769 + HGI48_RS15630 0.59 -0.1 3,513,770 - HGI48_RS15630 0.60 -0.4 3,513,772 - HGI48_RS15630 0.60 -0.6 3,513,942 + -2.6 3,514,024 + +0.4 3,514,086 - -1.2 3,514,190 - HGI48_RS15635 0.35 -1.0
Or see this region's nucleotide sequence