Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15025

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,379,787	-				-0.4
3,379,817	+				+0.9
3,379,818	-				-0.5
3,379,846	+				-0.7
3,379,847	-				-1.7
3,379,864	+				+0.5
3,379,865	-				+1.3
3,379,865	-				+1.8
3,379,918	+		HGI48_RS15020	0.13	-0.1
3,379,918	+		HGI48_RS15020	0.13	+1.1
3,379,952	-		HGI48_RS15020	0.18	-1.0
3,379,972	+				+1.1
3,379,972	+				-0.7
3,379,972	+		HGI48_RS15020	0.20	-1.7
3,379,972	+		HGI48_RS15020	0.20	-0.8
3,379,973	-		HGI48_RS15020	0.20	-0.0
3,379,973	-		HGI48_RS15020	0.20	-0.2
3,379,973	-		HGI48_RS15020	0.20	-0.1
3,379,977	-		HGI48_RS15020	0.21	-0.1
3,380,079	-				+2.3
3,380,097	-		HGI48_RS15020	0.35	-1.0
3,380,176	+		HGI48_RS15020	0.44	-0.1
3,380,176	+		HGI48_RS15020	0.44	+0.5
3,380,177	-		HGI48_RS15020	0.44	+0.1
3,380,177	-		HGI48_RS15020	0.44	+0.1
3,380,177	-		HGI48_RS15020	0.44	+2.2
3,380,206	+		HGI48_RS15020	0.48	-1.8
3,380,206	+		HGI48_RS15020	0.48	-0.1
3,380,267	+		HGI48_RS15020	0.55	-2.0
3,380,267	+		HGI48_RS15020	0.55	+1.6
3,380,268	-		HGI48_RS15020	0.55	-0.7
3,380,268	-		HGI48_RS15020	0.55	-2.0
3,380,383	-		HGI48_RS15020	0.69	-0.4
3,380,383	-		HGI48_RS15020	0.69	-0.5
3,380,383	-		HGI48_RS15020	0.69	-0.0
3,380,443	+		HGI48_RS15020	0.76	-1.6
3,380,443	+		HGI48_RS15020	0.76	-0.3
3,380,444	-				+0.3
3,380,474	-		HGI48_RS15020	0.80	-2.0
3,380,514	+		HGI48_RS15020	0.85	-2.0
3,380,567	-				-0.4
3,380,636	+				-0.4
3,380,637	-				+0.9
3,380,651	+				-1.1
3,380,669	+				+0.1
3,380,877	-				-0.3
3,380,951	+		HGI48_RS15025	0.16	-0.7
3,380,952	-		HGI48_RS15025	0.16	-0.5
3,380,952	-		HGI48_RS15025	0.16	+1.1
3,380,952	-		HGI48_RS15025	0.16	-0.4
3,380,955	+		HGI48_RS15025	0.16	-0.4
3,380,955	+		HGI48_RS15025	0.16	-0.7
3,380,955	+		HGI48_RS15025	0.16	-0.4
3,380,955	+		HGI48_RS15025	0.16	+1.2
3,380,956	-		HGI48_RS15025	0.16	-0.0
3,380,956	-		HGI48_RS15025	0.16	-0.3
3,380,956	-		HGI48_RS15025	0.16	-0.4
3,380,956	-		HGI48_RS15025	0.16	+0.6
3,380,971	-		HGI48_RS15025	0.17	-3.1
3,381,014	+		HGI48_RS15025	0.21	-1.4
3,381,014	+		HGI48_RS15025	0.21	+0.3
3,381,014	+		HGI48_RS15025	0.21	-0.6
3,381,015	-		HGI48_RS15025	0.21	+0.2
3,381,015	-		HGI48_RS15025	0.21	-0.3
3,381,015	-		HGI48_RS15025	0.21	+1.1
3,381,110	-		HGI48_RS15025	0.28	-1.0
3,381,110	-		HGI48_RS15025	0.28	+0.5
3,381,349	-		HGI48_RS15025	0.46	-0.9
3,381,400	-		HGI48_RS15025	0.50	+0.2
3,381,400	-		HGI48_RS15025	0.50	-1.1
3,381,546	-		HGI48_RS15025	0.61	+0.3
3,381,554	+		HGI48_RS15025	0.62	-0.8
3,381,554	+		HGI48_RS15025	0.62	-0.6
3,381,554	+		HGI48_RS15025	0.62	-0.3
3,381,554	+		HGI48_RS15025	0.62	+0.6
3,381,554	+		HGI48_RS15025	0.62	+1.8
3,381,555	-		HGI48_RS15025	0.62	-0.7
3,381,555	-		HGI48_RS15025	0.62	-0.7
3,381,555	-				-0.7
3,381,631	-		HGI48_RS15025	0.68	-0.5
3,381,631	-		HGI48_RS15025	0.68	-0.5
3,381,641	+		HGI48_RS15025	0.69	-0.8
3,381,690	+		HGI48_RS15025	0.72	-1.0
3,381,752	+		HGI48_RS15025	0.77	-1.5
3,381,790	+		HGI48_RS15025	0.80	-0.8
3,381,791	-		HGI48_RS15025	0.80	-1.8
3,381,847	-		HGI48_RS15025	0.84	+0.8
3,381,896	+		HGI48_RS15025	0.88	+0.6
3,381,896	+				+0.9
3,381,896	+		HGI48_RS15025	0.88	-0.1
3,381,896	+		HGI48_RS15025	0.88	-0.7
3,381,897	-		HGI48_RS15025	0.88	-2.0
3,382,045	-				-1.1
3,382,045	-				-0.6
3,382,101	+				-0.3
3,382,101	+				-0.8
3,382,126	+				-1.0
3,382,126	+				+0.3
3,382,335	-		HGI48_RS15030	0.17	-1.5
3,382,405	+		HGI48_RS15030	0.22	-1.4
3,382,406	-		HGI48_RS15030	0.22	-1.5
3,382,471	-		HGI48_RS15030	0.28	-0.8
3,382,477	+		HGI48_RS15030	0.28	-0.8
3,382,477	+		HGI48_RS15030	0.28	-0.5
3,382,478	-		HGI48_RS15030	0.28	-1.3
3,382,478	-				-0.3
3,382,478	-		HGI48_RS15030	0.28	-2.0
3,382,478	-				+2.1
3,382,680	-		HGI48_RS15030	0.44	-0.4
3,382,687	+		HGI48_RS15030	0.45	+0.9
3,382,701	+		HGI48_RS15030	0.46	-0.4
3,382,796	+		HGI48_RS15030	0.54	+0.6
3,382,840	+		HGI48_RS15030	0.57	+0.9
3,382,840	+		HGI48_RS15030	0.57	-0.5
3,382,840	+		HGI48_RS15030	0.57	-1.7
3,382,841	-				+0.7
3,382,841	-		HGI48_RS15030	0.57	-0.1
3,382,841	-		HGI48_RS15030	0.57	+0.3
3,382,843	+		HGI48_RS15030	0.57	-0.5
3,382,843	+				+2.8
3,382,844	-		HGI48_RS15030	0.57	+0.3
3,382,844	-		HGI48_RS15030	0.57	-1.1
3,382,844	-		HGI48_RS15030	0.57	+2.0
3,382,909	+		HGI48_RS15030	0.63	-0.4
3,382,909	+		HGI48_RS15030	0.63	+0.3
3,382,996	+		HGI48_RS15030	0.69	+0.3
3,382,997	-		HGI48_RS15030	0.70	+1.5
3,382,997	-				+0.3
3,382,997	-		HGI48_RS15030	0.70	-1.0
3,383,006	+		HGI48_RS15030	0.70	+0.8