Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15005

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,374,991	-		HGI48_RS15000	0.35	-0.3
3,374,991	-		HGI48_RS15000	0.35	-0.4
3,374,998	+		HGI48_RS15000	0.36	+0.6
3,374,998	+		HGI48_RS15000	0.36	+0.2
3,374,999	-		HGI48_RS15000	0.36	-0.7
3,375,031	+		HGI48_RS15000	0.38	+0.6
3,375,031	+				+1.1
3,375,031	+				+0.3
3,375,098	-		HGI48_RS15000	0.44	-0.2
3,375,128	+		HGI48_RS15000	0.46	-0.8
3,375,128	+		HGI48_RS15000	0.46	+0.7
3,375,128	+		HGI48_RS15000	0.46	+0.5
3,375,128	+		HGI48_RS15000	0.46	-2.3
3,375,129	-		HGI48_RS15000	0.46	-0.4
3,375,129	-		HGI48_RS15000	0.46	-0.9
3,375,129	-		HGI48_RS15000	0.46	+0.5
3,375,242	+		HGI48_RS15000	0.55	+0.3
3,375,243	-				-0.7
3,375,289	+		HGI48_RS15000	0.59	+0.1
3,375,289	+		HGI48_RS15000	0.59	-0.3
3,375,290	-		HGI48_RS15000	0.59	+0.0
3,375,349	+				+0.9
3,375,350	-		HGI48_RS15000	0.63	-0.0
3,375,350	-		HGI48_RS15000	0.63	-1.3
3,375,350	-		HGI48_RS15000	0.63	-0.4
3,375,350	-		HGI48_RS15000	0.63	+0.6
3,375,375	-		HGI48_RS15000	0.65	+0.8
3,375,548	+		HGI48_RS15000	0.79	-1.7
3,375,563	+		HGI48_RS15000	0.80	+0.3
3,375,651	-		HGI48_RS15000	0.87	-0.4
3,375,688	+				+0.0
3,375,689	-				-0.7
3,375,689	-				-0.2
3,375,723	-				-0.6
3,375,775	+				-0.7
3,375,824	+				+0.1
3,375,826	+				+0.2
3,375,826	+				-1.0
3,375,859	-				-0.1
3,375,867	+				-0.4
3,375,885	+				+0.1
3,375,931	+				+0.9
3,375,958	+				-0.4
3,375,959	-				-0.8
3,375,959	-				+0.3
3,375,959	-				-2.3
3,375,972	+				+0.3
3,376,015	+				-0.8
3,376,074	+		HGI48_RS15005	0.28	+1.2
3,376,158	+		HGI48_RS15005	0.55	-0.2
3,376,159	-		HGI48_RS15005	0.55	+0.2
3,376,240	+		HGI48_RS15005	0.81	-0.4
3,376,279	-				+1.0
3,376,305	+				+0.6
3,376,305	+				-0.8
3,376,306	-				+0.3
3,376,306	-				-0.7
3,376,306	-				+0.3
3,376,324	+				+0.1
3,376,451	+				-3.1
3,376,493	+				-0.3
3,376,493	+				-1.1
3,376,494	-				+1.8
3,376,534	+				+0.3
3,376,550	+				+0.3
3,376,550	+				-0.1
3,376,551	-				+0.4
3,376,572	-				+0.3
3,376,693	+		HGI48_RS15010	0.14	-0.2
3,376,693	+		HGI48_RS15010	0.14	+0.3
3,376,694	-		HGI48_RS15010	0.14	+0.3
3,376,747	+		HGI48_RS15010	0.16	-0.5
3,376,748	-		HGI48_RS15010	0.16	-0.1
3,376,748	-		HGI48_RS15010	0.16	-2.1
3,376,748	-		HGI48_RS15010	0.16	-0.7
3,376,748	-		HGI48_RS15010	0.16	+0.5
3,376,762	+		HGI48_RS15010	0.17	-0.6
3,376,762	+		HGI48_RS15010	0.17	+0.3
3,376,871	+		HGI48_RS15010	0.22	+0.3
3,376,872	-		HGI48_RS15010	0.22	-0.4
3,376,873	+		HGI48_RS15010	0.22	-0.7
3,376,873	+				-1.3
3,376,873	+		HGI48_RS15010	0.22	+0.3
3,376,874	-		HGI48_RS15010	0.23	-0.2
3,376,990	+		HGI48_RS15010	0.28	+0.8
3,376,990	+				+0.3
3,377,062	+		HGI48_RS15010	0.32	-0.9
3,377,062	+		HGI48_RS15010	0.32	-0.1
3,377,062	+		HGI48_RS15010	0.32	+0.2
3,377,063	-		HGI48_RS15010	0.32	+1.6
3,377,063	-		HGI48_RS15010	0.32	-0.7
3,377,063	-		HGI48_RS15010	0.32	-1.3
3,377,063	-				+0.3
3,377,063	-		HGI48_RS15010	0.32	-2.7
3,377,079	+		HGI48_RS15010	0.33	-0.7
3,377,079	+				+1.9
3,377,080	-		HGI48_RS15010	0.33	+0.1
3,377,080	-		HGI48_RS15010	0.33	-0.1
3,377,080	-		HGI48_RS15010	0.33	-1.1
3,377,180	-		HGI48_RS15010	0.37	-0.1