Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14835

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,342,691	+		HGI48_RS14830	0.82	-1.8
3,342,691	+				+0.3
3,342,691	+		HGI48_RS14830	0.82	-0.7
3,342,691	+		HGI48_RS14830	0.82	-1.0
3,342,706	+		HGI48_RS14830	0.83	-0.5
3,342,707	-		HGI48_RS14830	0.83	-0.7
3,342,707	-		HGI48_RS14830	0.83	-2.0
3,342,707	-		HGI48_RS14830	0.83	-1.7
3,342,707	-		HGI48_RS14830	0.83	+0.1
3,342,708	+		HGI48_RS14830	0.83	+0.7
3,342,708	+		HGI48_RS14830	0.83	+0.5
3,342,709	-				+2.6
3,342,709	-		HGI48_RS14830	0.83	-0.1
3,342,709	-		HGI48_RS14830	0.83	+0.8
3,342,709	-		HGI48_RS14830	0.83	-0.1
3,342,718	+		HGI48_RS14830	0.83	-0.2
3,342,718	+		HGI48_RS14830	0.83	-0.8
3,342,719	-		HGI48_RS14830	0.83	-1.7
3,342,723	+		HGI48_RS14830	0.83	+0.3
3,342,723	+		HGI48_RS14830	0.83	-0.4
3,342,723	+		HGI48_RS14830	0.83	-0.1
3,342,723	+		HGI48_RS14830	0.83	-2.0
3,342,724	-		HGI48_RS14830	0.83	-0.0
3,342,728	-		HGI48_RS14830	0.83	-0.6
3,342,731	+		HGI48_RS14830	0.83	-0.7
3,342,731	+		HGI48_RS14830	0.83	+0.9
3,342,731	+		HGI48_RS14830	0.83	-0.4
3,342,731	+		HGI48_RS14830	0.83	-0.1
3,342,731	+		HGI48_RS14830	0.83	-1.0
3,342,732	-		HGI48_RS14830	0.83	-1.9
3,342,732	-		HGI48_RS14830	0.83	+0.1
3,342,732	-		HGI48_RS14830	0.83	+0.5
3,342,734	+		HGI48_RS14830	0.83	-1.6
3,342,734	+		HGI48_RS14830	0.83	+0.5
3,342,735	-		HGI48_RS14830	0.83	+0.5
3,342,735	-		HGI48_RS14830	0.83	-0.3
3,342,776	+		HGI48_RS14830	0.84	-0.3
3,342,777	-		HGI48_RS14830	0.84	-0.4
3,342,799	+		HGI48_RS14830	0.84	-1.7
3,342,804	-				+0.3
3,342,851	-		HGI48_RS14830	0.85	-0.5
3,342,861	+		HGI48_RS14830	0.86	+0.7
3,342,861	+		HGI48_RS14830	0.86	+0.0
3,342,861	+		HGI48_RS14830	0.86	-0.0
3,342,861	+		HGI48_RS14830	0.86	-0.3
3,342,862	-		HGI48_RS14830	0.86	-1.0
3,342,862	-		HGI48_RS14830	0.86	-0.0
3,342,910	+		HGI48_RS14830	0.86	+0.4
3,342,911	-		HGI48_RS14830	0.86	-0.2
3,342,929	-		HGI48_RS14830	0.87	+1.0
3,342,958	+				+0.3
3,342,958	+		HGI48_RS14830	0.87	-0.3
3,342,959	-		HGI48_RS14830	0.87	+0.6
3,342,959	-		HGI48_RS14830	0.87	-0.4
3,342,974	-		HGI48_RS14830	0.88	-0.1
3,342,975	+		HGI48_RS14830	0.88	-1.0
3,343,038	+		HGI48_RS14830	0.89	-0.0
3,343,098	-		HGI48_RS14830	0.90	-1.6
3,343,102	+		HGI48_RS14830	0.90	-1.5
3,343,103	-		HGI48_RS14830	0.90	-2.3
3,343,103	-				-0.7
3,343,135	+				-0.1
3,343,135	+				+1.9
3,343,174	-				+0.7
3,343,176	-				+0.9
3,343,176	-				+0.6
3,343,176	-				-0.4
3,343,178	+				-0.4
3,343,178	+				-0.2
3,343,179	-				+2.3
3,343,243	+				-0.9
3,343,243	+				+0.2
3,343,288	+				-0.3
3,343,288	+				-2.5
3,343,406	+				+0.3
3,343,406	+				-1.0
3,343,406	+				-0.9
3,343,407	-				-0.5
3,343,411	+				-0.4
3,343,411	+				-0.2
3,343,412	-				+0.3
3,343,454	+				-0.1
3,343,459	+				+1.3
3,343,460	-				-1.7
3,343,461	+				+1.6
3,343,478	+				-0.2
3,343,478	+				+0.9
3,343,478	+				-0.2
3,343,478	+				-0.7
3,343,479	-				-1.3
3,343,482	+				+0.5
3,343,498	+				-3.5
3,343,514	+				+0.4
3,343,514	+				-0.6
3,343,515	-				+0.3
3,343,515	-				-0.1
3,343,517	+				-0.4
3,343,573	+				+0.4
3,343,575	+				+0.3
3,343,575	+				+1.1
3,343,616	+				+0.5
3,343,634	+				-0.7
3,343,645	+				-1.0
3,343,648	+				+0.3
3,343,654	+				+0.2
3,343,671	+				-0.7
3,343,718	-				-0.4
3,343,718	-				-0.2
3,343,718	-				+0.3
3,343,905	+		HGI48_RS14835	0.24	-0.3
3,343,967	-		HGI48_RS14835	0.30	+0.0
3,344,080	-		HGI48_RS14835	0.41	-0.7
3,344,090	+		HGI48_RS14835	0.42	-0.3
3,344,090	+		HGI48_RS14835	0.42	-0.7
3,344,090	+				-1.3
3,344,090	+		HGI48_RS14835	0.42	-0.0
3,344,091	-		HGI48_RS14835	0.42	+0.3
3,344,091	-		HGI48_RS14835	0.42	-1.0
3,344,091	-		HGI48_RS14835	0.42	-2.0
3,344,152	+		HGI48_RS14835	0.48	-0.4
3,344,153	-		HGI48_RS14835	0.48	-1.5
3,344,168	-				+1.3
3,344,168	-		HGI48_RS14835	0.50	-1.0
3,344,277	+		HGI48_RS14835	0.60	+0.2
3,344,277	+		HGI48_RS14835	0.60	-1.0
3,344,278	-		HGI48_RS14835	0.60	+0.4
3,344,278	-		HGI48_RS14835	0.60	-0.2
3,344,281	+		HGI48_RS14835	0.60	-2.0
3,344,281	+		HGI48_RS14835	0.60	-0.1
3,344,282	-		HGI48_RS14835	0.60	-0.1
3,344,282	-		HGI48_RS14835	0.60	+0.8
3,344,282	-		HGI48_RS14835	0.60	+1.5
3,344,282	-		HGI48_RS14835	0.60	-0.9
3,344,282	-				+0.7
3,344,300	+		HGI48_RS14835	0.62	+0.1
3,344,301	-		HGI48_RS14835	0.62	-0.0
3,344,335	-		HGI48_RS14835	0.66	-0.3
3,344,335	-		HGI48_RS14835	0.66	-0.7
3,344,337	+				-0.3
3,344,391	+				+1.0
3,344,392	-		HGI48_RS14835	0.71	+0.6
3,344,433	+		HGI48_RS14835	0.75	-0.7
3,344,434	-		HGI48_RS14835	0.75	-0.1
3,344,448	+		HGI48_RS14835	0.76	-1.6
3,344,448	+		HGI48_RS14835	0.76	+1.0
3,344,448	+		HGI48_RS14835	0.76	-1.1
3,344,449	-		HGI48_RS14835	0.76	-0.7
3,344,449	-		HGI48_RS14835	0.76	+0.5
3,344,449	-		HGI48_RS14835	0.76	-0.1
3,344,461	-		HGI48_RS14835	0.78	+0.6
3,344,494	-		HGI48_RS14835	0.81	+0.6
3,344,500	+		HGI48_RS14835	0.81	-0.1
3,344,501	-		HGI48_RS14835	0.81	+0.6
3,344,501	-		HGI48_RS14835	0.81	+1.0
3,344,501	-		HGI48_RS14835	0.81	-0.7
3,344,501	-		HGI48_RS14835	0.81	-0.7
3,344,539	-		HGI48_RS14835	0.85	-1.0
3,344,596	+				-0.0
3,344,596	+				-0.4
3,344,596	+				-0.9
3,344,596	+				+0.3
3,344,596	+				-1.0
3,344,598	+				+1.7
3,344,599	-				+1.3
3,344,735	+				+0.7
3,344,804	-				-0.3
3,344,805	+				-1.7
3,344,805	+				+1.3
3,344,837	-				-0.7
3,344,898	-		HGI48_RS14840	0.10	+0.3
3,344,902	+		HGI48_RS14840	0.10	+0.1
3,344,931	-		HGI48_RS14840	0.12	+0.6
3,344,976	-		HGI48_RS14840	0.14	+0.6
3,345,032	+		HGI48_RS14840	0.17	+0.2
3,345,044	+		HGI48_RS14840	0.18	+0.2
3,345,045	-		HGI48_RS14840	0.18	-0.1
3,345,086	+		HGI48_RS14840	0.20	+0.3
3,345,096	-		HGI48_RS14840	0.21	-2.0
3,345,101	-		HGI48_RS14840	0.21	+1.1
3,345,101	-		HGI48_RS14840	0.21	-0.2
3,345,194	+		HGI48_RS14840	0.26	+1.0
3,345,195	-		HGI48_RS14840	0.26	-0.2
3,345,195	-		HGI48_RS14840	0.26	+0.1
3,345,197	-		HGI48_RS14840	0.26	-0.2
3,345,313	+		HGI48_RS14840	0.32	-1.5
3,345,313	+		HGI48_RS14840	0.32	-0.9
3,345,314	-		HGI48_RS14840	0.32	-0.1
3,345,321	-		HGI48_RS14840	0.33	+0.5
3,345,342	+		HGI48_RS14840	0.34	-0.1
3,345,457	+		HGI48_RS14840	0.40	-0.3