Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13960

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,119,436	+		HGI48_RS13945	0.58	+0.0
3,119,548	+				+0.0
3,119,548	+				+0.2
3,119,549	-				-1.2
3,119,571	+				-1.2
3,119,571	+				-0.1
3,119,571	+				-1.1
3,119,572	-				-0.4
3,119,572	-				-2.1
3,119,591	+		HGI48_RS13950	0.14	+0.1
3,119,592	-		HGI48_RS13950	0.14	+0.4
3,119,642	+		HGI48_RS13950	0.30	+0.1
3,119,642	+		HGI48_RS13950	0.30	-1.6
3,119,642	+		HGI48_RS13950	0.30	+0.9
3,119,642	+		HGI48_RS13950	0.30	-1.8
3,119,642	+		HGI48_RS13950	0.30	+0.1
3,119,642	+		HGI48_RS13950	0.30	+0.2
3,119,643	-		HGI48_RS13950	0.30	+0.7
3,119,643	-		HGI48_RS13950	0.30	+0.2
3,119,664	+				-1.3
3,119,672	-		HGI48_RS13950	0.40	-0.1
3,119,786	+		HGI48_RS13950	0.76	-1.9
3,119,787	-		HGI48_RS13950	0.76	+0.5
3,119,787	-		HGI48_RS13950	0.76	-0.3
3,119,789	+		HGI48_RS13950	0.77	-0.5
3,119,790	-		HGI48_RS13950	0.77	-1.2
3,119,841	-				-2.2
3,119,845	+				-1.0
3,119,865	+				+0.2
3,119,865	+				-0.8
3,119,866	-				+0.6
3,120,121	+				-0.5
3,120,122	-				-0.6
3,120,122	-				-0.2
3,120,122	-				+1.1
3,120,132	+				+0.3
3,120,132	+				-1.1
3,120,132	+				-2.6
3,120,144	+				-0.3
3,120,145	-				-2.3
3,120,150	+				-1.9
3,120,151	-				-1.3
3,120,151	-				-0.0
3,120,156	-				+0.1
3,120,215	+				-2.1
3,120,216	-				-3.5
3,120,231	+				-0.6
3,120,232	-				+0.7
3,120,232	-				-0.3
3,120,232	-				-0.5
3,120,248	+				-0.4
3,120,249	-				+1.2
3,120,249	-				+0.3
3,120,249	-				+0.5
3,120,249	-				+0.4
3,120,307	+				-0.3
3,120,307	+				-0.0
3,120,308	-				+0.2
3,120,440	+		HGI48_RS13960	0.11	+0.2
3,120,482	+		HGI48_RS13960	0.36	-2.1
3,120,483	-		HGI48_RS13960	0.36	-1.5
3,120,524	+				+2.1
3,120,524	+		HGI48_RS13960	0.60	-1.3
3,120,524	+		HGI48_RS13960	0.60	+0.2
3,120,524	+		HGI48_RS13960	0.60	+0.0
3,120,524	+		HGI48_RS13960	0.60	+0.2
3,120,524	+		HGI48_RS13960	0.60	-0.5
3,120,524	+		HGI48_RS13960	0.60	-0.4
3,120,524	+				+2.6
3,120,525	-		HGI48_RS13960	0.61	+0.0
3,120,525	-		HGI48_RS13960	0.61	+0.4
3,120,525	-		HGI48_RS13960	0.61	+1.2
3,120,656	+				+0.2
3,120,656	+				+1.2
3,120,656	+				-1.8
3,120,656	+				-1.3
3,120,656	+				+0.4
3,120,657	-				-0.5
3,120,657	-				+0.5
3,120,806	+				-0.9
3,120,807	-				+0.2
3,120,807	-				+0.2
3,120,828	-				+0.9
3,120,872	-				+0.8
3,120,944	+		HGI48_RS13965	0.15	-0.1
3,120,944	+				+2.1
3,120,944	+		HGI48_RS13965	0.15	-0.0
3,120,945	-		HGI48_RS13965	0.15	-0.3
3,120,945	-				+2.8
3,120,945	-		HGI48_RS13965	0.15	-1.3
3,121,024	-		HGI48_RS13965	0.19	+0.9
3,121,024	-				+1.2
3,121,025	+		HGI48_RS13965	0.19	+0.1
3,121,025	+		HGI48_RS13965	0.19	-0.4
3,121,025	+		HGI48_RS13965	0.19	-0.5
3,121,026	-		HGI48_RS13965	0.19	-0.8
3,121,026	-				+0.7
3,121,026	-		HGI48_RS13965	0.19	+0.5
3,121,026	-		HGI48_RS13965	0.19	-2.3
3,121,059	-		HGI48_RS13965	0.21	-0.6
3,121,093	-				+1.2
3,121,093	-		HGI48_RS13965	0.23	-0.2
3,121,169	-		HGI48_RS13965	0.27	+0.1
3,121,183	+		HGI48_RS13965	0.28	+0.6
3,121,184	-		HGI48_RS13965	0.28	-0.4
3,121,184	-		HGI48_RS13965	0.28	-0.5
3,121,184	-		HGI48_RS13965	0.28	-0.1
3,121,213	+		HGI48_RS13965	0.29	-2.1
3,121,213	+		HGI48_RS13965	0.29	-0.0
3,121,213	+				+0.2
3,121,213	+		HGI48_RS13965	0.29	-0.5
3,121,213	+		HGI48_RS13965	0.29	-0.1
3,121,213	+		HGI48_RS13965	0.29	+0.9
3,121,214	-		HGI48_RS13965	0.29	-0.9
3,121,214	-		HGI48_RS13965	0.29	-0.8
3,121,214	-		HGI48_RS13965	0.29	+0.6
3,121,214	-		HGI48_RS13965	0.29	+0.2
3,121,218	+		HGI48_RS13965	0.30	-1.8
3,121,218	+		HGI48_RS13965	0.30	+0.8
3,121,308	-		HGI48_RS13965	0.35	-0.6
3,121,374	+		HGI48_RS13965	0.38	-1.0
3,121,374	+		HGI48_RS13965	0.38	-0.3
3,121,375	-				+1.2
3,121,433	-				+1.0