Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS13780 and HGI48_RS13785 are separated by 595 nucleotides HGI48_RS13785 and HGI48_RS13790 are separated by 170 nucleotides HGI48_RS13790 and HGI48_RS13795 are separated by 57 nucleotides
HGI48_RS13780: HGI48_RS13780 - LysE family transporter, at 3,071,922 to 3,072,530
_RS13780
HGI48_RS13785: HGI48_RS13785 - tRNA-Gly, at 3,073,126 to 3,073,201
_RS13785
HGI48_RS13790: HGI48_RS13790 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 3,073,372 to 3,073,920
_RS13790
HGI48_RS13795: HGI48_RS13795 - excinuclease ABC subunit UvrC, at 3,073,978 to 3,075,810
_RS13795
Position (kb)
3073
3074 Strain fitness (log2 ratio)
-2
-1
0
1 at 3072.133 kb on + strand, within HGI48_RS13780 at 3072.135 kb on + strand, within HGI48_RS13780 at 3072.136 kb on - strand, within HGI48_RS13780 at 3072.212 kb on + strand, within HGI48_RS13780 at 3072.341 kb on - strand, within HGI48_RS13780 at 3072.456 kb on - strand, within HGI48_RS13780 at 3072.493 kb on + strand at 3072.592 kb on + strand at 3072.672 kb on - strand at 3072.775 kb on - strand at 3072.779 kb on - strand at 3072.880 kb on + strand at 3072.881 kb on - strand at 3072.887 kb on - strand at 3072.943 kb on - strand at 3072.960 kb on + strand at 3073.301 kb on + strand at 3073.301 kb on + strand at 3073.302 kb on - strand at 3073.302 kb on - strand at 3073.302 kb on - strand at 3073.952 kb on - strand at 3073.955 kb on - strand at 3073.955 kb on - strand at 3073.961 kb on - strand at 3073.961 kb on - strand at 3073.961 kb on - strand at 3073.969 kb on - strand at 3073.969 kb on - strand at 3073.969 kb on - strand at 3073.969 kb on - strand at 3074.087 kb on + strand at 3074.087 kb on + strand at 3074.087 kb on + strand at 3074.088 kb on - strand at 3074.130 kb on + strand at 3074.172 kb on + strand, within HGI48_RS13795 at 3074.173 kb on - strand, within HGI48_RS13795 at 3074.173 kb on - strand, within HGI48_RS13795
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,072,133 + HGI48_RS13780 0.35 -1.1 3,072,135 + HGI48_RS13780 0.35 -0.1 3,072,136 - HGI48_RS13780 0.35 +0.2 3,072,212 + HGI48_RS13780 0.48 -0.5 3,072,341 - HGI48_RS13780 0.69 -0.3 3,072,456 - HGI48_RS13780 0.88 -0.1 3,072,493 + +0.8 3,072,592 + +0.2 3,072,672 - -0.0 3,072,775 - -0.2 3,072,779 - +0.7 3,072,880 + +0.6 3,072,881 - +0.8 3,072,887 - -1.4 3,072,943 - +0.8 3,072,960 + -0.8 3,073,301 + -0.1 3,073,301 + -0.8 3,073,302 - -0.8 3,073,302 - -0.7 3,073,302 - +0.7 3,073,952 - +0.2 3,073,955 - -0.1 3,073,955 - -0.9 3,073,961 - -0.8 3,073,961 - -1.1 3,073,961 - -0.4 3,073,969 - -1.1 3,073,969 - +0.2 3,073,969 - +0.4 3,073,969 - -0.1 3,074,087 + +0.2 3,074,087 + -1.2 3,074,087 + -2.6 3,074,088 - +1.1 3,074,130 + -1.2 3,074,172 + HGI48_RS13795 0.11 +0.8 3,074,173 - HGI48_RS13795 0.11 -1.2 3,074,173 - HGI48_RS13795 0.11 +0.4
Or see this region's nucleotide sequence