Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13140

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,877,009	-		HGI48_RS13130	0.17	-1.0
2,877,009	-		HGI48_RS13130	0.17	-0.0
2,877,079	+		HGI48_RS13130	0.35	-0.7
2,877,079	+		HGI48_RS13130	0.35	+0.2
2,877,079	+		HGI48_RS13130	0.35	-0.8
2,877,080	-				+1.2
2,877,085	+		HGI48_RS13130	0.37	+0.4
2,877,122	+				-0.8
2,877,122	+		HGI48_RS13130	0.47	-1.0
2,877,122	+		HGI48_RS13130	0.47	+0.9
2,877,123	-		HGI48_RS13130	0.47	-1.1
2,877,123	-		HGI48_RS13130	0.47	-2.4
2,877,239	+		HGI48_RS13130	0.77	+0.4
2,877,318	+				-1.7
2,877,327	-				-0.3
2,877,381	+		HGI48_RS13135	0.13	-1.4
2,877,381	+		HGI48_RS13135	0.13	+0.1
2,877,381	+				-1.4
2,877,381	+				+0.6
2,877,382	-		HGI48_RS13135	0.14	-1.8
2,877,382	-		HGI48_RS13135	0.14	-0.5
2,877,392	+		HGI48_RS13135	0.17	-1.1
2,877,392	+		HGI48_RS13135	0.17	-0.3
2,877,393	-		HGI48_RS13135	0.17	-1.8
2,877,393	-		HGI48_RS13135	0.17	+0.4
2,877,393	-		HGI48_RS13135	0.17	-2.1
2,877,393	-		HGI48_RS13135	0.17	-0.4
2,877,393	-		HGI48_RS13135	0.17	-2.4
2,877,567	+		HGI48_RS13135	0.66	-0.1
2,877,568	-		HGI48_RS13135	0.67	+1.2
2,877,568	-		HGI48_RS13135	0.67	-1.5
2,877,631	-		HGI48_RS13135	0.85	-0.8
2,877,684	+				-1.4
2,877,700	-				-0.8
2,877,734	-				+0.5
2,877,734	-				-0.2
2,877,742	+				-0.4
2,877,743	-				+1.0
2,877,782	-				-1.1
2,877,976	+		HGI48_RS13140	0.17	-0.7
2,877,994	+		HGI48_RS13140	0.18	+0.0
2,877,994	+		HGI48_RS13140	0.18	-0.7
2,877,994	+		HGI48_RS13140	0.18	-1.0
2,877,994	+		HGI48_RS13140	0.18	-1.4
2,877,994	+		HGI48_RS13140	0.18	-2.1
2,878,028	+		HGI48_RS13140	0.22	-1.4
2,878,116	+		HGI48_RS13140	0.30	+0.6
2,878,116	+		HGI48_RS13140	0.30	-0.2
2,878,116	+				-0.4
2,878,116	+		HGI48_RS13140	0.30	-0.5
2,878,116	+				+0.8
2,878,116	+				+0.2
2,878,117	-		HGI48_RS13140	0.30	+0.1
2,878,117	-		HGI48_RS13140	0.30	-1.8
2,878,117	-		HGI48_RS13140	0.30	+0.7
2,878,117	-		HGI48_RS13140	0.30	-0.4
2,878,118	+		HGI48_RS13140	0.30	-0.2
2,878,118	+		HGI48_RS13140	0.30	-1.8
2,878,334	+		HGI48_RS13140	0.50	-1.4
2,878,371	-		HGI48_RS13140	0.54	+0.5
2,878,376	+				+1.2
2,878,377	-		HGI48_RS13140	0.55	+0.0
2,878,492	+		HGI48_RS13140	0.65	+0.5
2,878,492	+		HGI48_RS13140	0.65	-0.4
2,878,680	-		HGI48_RS13140	0.83	+1.3
2,878,680	-		HGI48_RS13140	0.83	-0.1
2,878,705	+		HGI48_RS13140	0.85	-0.3
2,878,705	+		HGI48_RS13140	0.85	-0.8
2,878,705	+		HGI48_RS13140	0.85	-0.1
2,878,706	-		HGI48_RS13140	0.85	+0.1
2,878,822	+				+1.3
2,878,822	+				+2.2
2,878,822	+				+0.6
2,878,823	-				-0.4
2,878,823	-				-1.8
2,878,823	-				-0.5
2,878,862	+				-0.2
2,878,863	-				+1.2
2,878,963	+				+0.2
2,878,964	-				+0.5
2,878,985	+				-0.8
2,878,985	+				-1.6
2,879,044	+				-0.2
2,879,044	+				-0.0
2,879,045	-				-0.1
2,879,045	-				-0.8
2,879,065	+				-0.1
2,879,094	-				-1.0
2,879,152	+				+0.5
2,879,164	+				-0.6
2,879,172	+				+0.6
2,879,172	+				-2.4
2,879,173	-				+3.0
2,879,173	-				-1.0
2,879,173	-				+0.9
2,879,173	-				-0.3
2,879,326	+		HGI48_RS13145	0.12	+0.4
2,879,326	+		HGI48_RS13145	0.12	-0.3
2,879,326	+		HGI48_RS13145	0.12	+0.1
2,879,326	+		HGI48_RS13145	0.12	-0.8
2,879,326	+				+0.2
2,879,326	+		HGI48_RS13145	0.12	+0.2
2,879,327	-		HGI48_RS13145	0.12	+0.2
2,879,327	-		HGI48_RS13145	0.12	-0.8
2,879,327	-		HGI48_RS13145	0.12	-1.1
2,879,484	+		HGI48_RS13145	0.23	-0.6
2,879,484	+				-0.4
2,879,485	-		HGI48_RS13145	0.23	-0.8
2,879,485	-		HGI48_RS13145	0.23	-2.0
2,879,485	-		HGI48_RS13145	0.23	+0.0
2,879,487	+		HGI48_RS13145	0.23	+0.4
2,879,488	-				+0.2
2,879,499	+		HGI48_RS13145	0.24	+0.7
2,879,499	+		HGI48_RS13145	0.24	-2.1
2,879,655	+		HGI48_RS13145	0.35	-1.3
2,879,655	+				-0.4
2,879,655	+		HGI48_RS13145	0.35	-1.8
2,879,655	+		HGI48_RS13145	0.35	-0.2
2,879,655	+		HGI48_RS13145	0.35	+0.5
2,879,656	-				+2.0
2,879,656	-		HGI48_RS13145	0.35	-0.3
2,879,656	-		HGI48_RS13145	0.35	-0.8
2,879,705	-		HGI48_RS13145	0.38	-1.0
2,879,705	-		HGI48_RS13145	0.38	-0.1
2,879,814	+		HGI48_RS13145	0.46	+0.0
2,879,814	+				+1.9
2,879,814	+		HGI48_RS13145	0.46	-0.2
2,879,814	+		HGI48_RS13145	0.46	+0.2
2,879,814	+		HGI48_RS13145	0.46	-0.3
2,879,814	+		HGI48_RS13145	0.46	-1.1
2,879,815	-		HGI48_RS13145	0.46	-1.8
2,879,815	-		HGI48_RS13145	0.46	+1.1
2,879,815	-		HGI48_RS13145	0.46	-1.8
2,879,815	-		HGI48_RS13145	0.46	-1.9
2,879,815	-		HGI48_RS13145	0.46	-0.6