Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS12955

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,830,698	-		HGI48_RS12945	0.87	-0.8
2,830,779	+				-0.8
2,830,884	+				-0.4
2,830,884	+		HGI48_RS12950	0.11	+0.6
2,830,885	-		HGI48_RS12950	0.11	-0.4
2,830,900	+		HGI48_RS12950	0.13	+0.4
2,830,901	-		HGI48_RS12950	0.13	-0.8
2,830,901	-		HGI48_RS12950	0.13	-1.1
2,830,962	+		HGI48_RS12950	0.21	+0.4
2,831,099	+		HGI48_RS12950	0.38	-2.4
2,831,100	-		HGI48_RS12950	0.39	+0.6
2,831,534	+				-0.3
2,831,712	-				-0.2
2,832,247	+		HGI48_RS12955	0.21	-0.1
2,832,247	+		HGI48_RS12955	0.21	+0.2
2,832,247	+		HGI48_RS12955	0.21	-0.8
2,832,247	+				+0.2
2,832,248	-		HGI48_RS12955	0.21	-0.3
2,832,305	-		HGI48_RS12955	0.23	-1.1
2,832,330	+		HGI48_RS12955	0.24	+0.8
2,832,583	+		HGI48_RS12955	0.34	+0.2
2,832,583	+		HGI48_RS12955	0.34	+0.7
2,832,583	+		HGI48_RS12955	0.34	-0.4
2,832,583	+		HGI48_RS12955	0.34	-0.9
2,832,583	+		HGI48_RS12955	0.34	-2.0
2,832,584	-		HGI48_RS12955	0.34	+0.4
2,832,584	-		HGI48_RS12955	0.34	-0.2
2,832,584	-		HGI48_RS12955	0.34	+1.5
2,832,584	-		HGI48_RS12955	0.34	-0.3
2,832,584	-		HGI48_RS12955	0.34	-2.4
2,832,584	-		HGI48_RS12955	0.34	-1.7
2,832,676	+		HGI48_RS12955	0.38	-0.2
2,832,838	+		HGI48_RS12955	0.44	-0.3
2,832,838	+		HGI48_RS12955	0.44	-0.3
2,832,839	-		HGI48_RS12955	0.44	-0.7
2,832,839	-				-0.4
2,832,839	-		HGI48_RS12955	0.44	-1.0
2,832,839	-		HGI48_RS12955	0.44	+0.1
2,832,861	-		HGI48_RS12955	0.45	-1.4
2,832,875	+		HGI48_RS12955	0.45	+0.3
2,832,876	-		HGI48_RS12955	0.45	-0.6
2,832,876	-		HGI48_RS12955	0.45	+0.5
2,832,876	-		HGI48_RS12955	0.45	+0.2
2,832,876	-		HGI48_RS12955	0.45	+1.6
2,832,876	-				+1.2
2,832,946	+		HGI48_RS12955	0.48	+0.9
2,832,988	+		HGI48_RS12955	0.50	-0.2
2,832,988	+		HGI48_RS12955	0.50	-0.7
2,833,041	+		HGI48_RS12955	0.52	-0.3
2,833,041	+		HGI48_RS12955	0.52	-2.1
2,833,088	-		HGI48_RS12955	0.53	-1.7
2,833,088	-		HGI48_RS12955	0.53	+0.2
2,833,088	-		HGI48_RS12955	0.53	+0.2
2,833,179	-				+1.4
2,833,180	+		HGI48_RS12955	0.57	-0.8
2,833,180	+		HGI48_RS12955	0.57	-0.5
2,833,180	+		HGI48_RS12955	0.57	+0.7
2,833,180	+		HGI48_RS12955	0.57	+0.5
2,833,181	-		HGI48_RS12955	0.57	-0.2
2,833,181	-		HGI48_RS12955	0.57	-1.1
2,833,444	+		HGI48_RS12955	0.67	-1.7
2,833,445	-		HGI48_RS12955	0.67	-2.2
2,833,483	+		HGI48_RS12955	0.69	-1.2
2,833,483	+		HGI48_RS12955	0.69	-0.4
2,833,483	+		HGI48_RS12955	0.69	+0.9
2,833,483	+		HGI48_RS12955	0.69	-1.1
2,833,483	+		HGI48_RS12955	0.69	-0.3
2,833,484	-		HGI48_RS12955	0.69	-0.4
2,833,484	-		HGI48_RS12955	0.69	-1.7
2,833,484	-		HGI48_RS12955	0.69	-0.0
2,833,556	+				-0.4
2,833,556	+		HGI48_RS12955	0.71	-0.1
2,833,556	+		HGI48_RS12955	0.71	+0.4
2,833,556	+		HGI48_RS12955	0.71	-0.3
2,833,556	+		HGI48_RS12955	0.71	-0.8
2,833,557	-		HGI48_RS12955	0.71	-0.3
2,833,558	+		HGI48_RS12955	0.71	+0.4
2,833,558	+		HGI48_RS12955	0.71	-1.7
2,833,558	+		HGI48_RS12955	0.71	+0.2
2,833,558	+		HGI48_RS12955	0.71	+0.0
2,833,558	+		HGI48_RS12955	0.71	-0.8
2,833,558	+		HGI48_RS12955	0.71	-0.3
2,833,558	+		HGI48_RS12955	0.71	-0.8
2,833,559	-		HGI48_RS12955	0.71	-0.4
2,833,559	-		HGI48_RS12955	0.71	-1.7
2,833,559	-		HGI48_RS12955	0.71	-0.7
2,833,574	-		HGI48_RS12955	0.72	-0.7
2,833,753	+		HGI48_RS12955	0.79	-0.3
2,833,753	+		HGI48_RS12955	0.79	+0.7
2,833,785	+		HGI48_RS12955	0.80	-0.7
2,833,846	+		HGI48_RS12955	0.82	-0.7
2,833,915	+		HGI48_RS12955	0.85	-0.3
2,833,915	+		HGI48_RS12955	0.85	+0.0
2,833,915	+		HGI48_RS12955	0.85	-2.4
2,833,915	+		HGI48_RS12955	0.85	+0.5
2,833,915	+		HGI48_RS12955	0.85	-0.5
2,833,916	-		HGI48_RS12955	0.85	-0.6
2,833,916	-		HGI48_RS12955	0.85	-0.2
2,833,916	-		HGI48_RS12955	0.85	+0.6
2,833,918	+		HGI48_RS12955	0.85	+1.0
2,833,918	+		HGI48_RS12955	0.85	-1.8
2,833,918	+		HGI48_RS12955	0.85	-1.8
2,833,918	+		HGI48_RS12955	0.85	-0.5
2,833,918	+		HGI48_RS12955	0.85	+0.0
2,833,918	+		HGI48_RS12955	0.85	+1.2
2,833,918	+		HGI48_RS12955	0.85	-0.1
2,833,918	+		HGI48_RS12955	0.85	-0.3
2,833,918	+		HGI48_RS12955	0.85	+0.7
2,833,918	+		HGI48_RS12955	0.85	+0.3
2,833,919	-				+0.9
2,833,919	-		HGI48_RS12955	0.85	-1.8
2,833,919	-				-0.4
2,833,919	-		HGI48_RS12955	0.85	+0.2
2,833,919	-		HGI48_RS12955	0.85	-1.1
2,833,919	-		HGI48_RS12955	0.85	-0.7
2,833,919	-		HGI48_RS12955	0.85	-1.8
2,833,919	-		HGI48_RS12955	0.85	-0.6
2,833,919	-		HGI48_RS12955	0.85	+0.5
2,833,919	-		HGI48_RS12955	0.85	+1.0
2,833,919	-		HGI48_RS12955	0.85	-0.4
2,833,978	+				+1.2
2,833,979	-		HGI48_RS12955	0.87	-2.0
2,833,979	-		HGI48_RS12955	0.87	+0.2
2,834,252	+				-1.4
2,834,252	+				+1.4
2,834,252	+				-2.2
2,834,252	+				+0.8
2,834,252	+				+0.0
2,834,252	+				+0.2
2,834,253	-				-0.0
2,834,253	-				+0.2
2,834,253	-				-0.5
2,834,253	-				+0.9
2,834,253	-				-0.3
2,834,255	-				-0.4
2,834,255	-				+1.6
2,834,282	-				+0.5
2,834,314	+				-0.8
2,834,315	-				-1.2
2,834,331	+				-0.8
2,834,391	+				-2.2
2,834,391	+				+0.3
2,834,391	+				-0.8
2,834,391	+				-0.4
2,834,391	+				-0.1
2,834,391	+				-2.2
2,834,391	+				-0.5
2,834,391	+				-0.1
2,834,391	+				+0.3
2,834,391	+				-1.5
2,834,391	+				-1.6
2,834,391	+				-0.3
2,834,392	-				+0.2
2,834,392	-				+1.4
2,834,392	-				-1.1
2,834,392	-				+0.4
2,834,392	-				-0.5
2,834,393	+				+0.2
2,834,393	+				-1.4
2,834,394	-				-0.8
2,834,394	-				-0.8
2,834,394	-				+0.0
2,834,394	-				-3.2
2,834,395	+				+2.2
2,834,395	+				-0.8
2,834,396	-				-1.8
2,834,396	-				+0.0
2,834,410	+				-0.5
2,834,410	+				-0.4
2,834,410	+				-0.2
2,834,411	-				+0.2
2,834,411	-				-2.4
2,834,411	-				+1.2
2,834,412	+				+0.9
2,834,412	+				-0.5
2,834,413	-				-1.4
2,834,413	-				-1.4
2,834,458	-				-0.1
2,834,497	+				-2.7
2,834,497	+				-0.5
2,834,497	+				-1.0
2,834,498	-				-0.8
2,834,498	-				-1.4
2,834,498	-				+0.7
2,834,501	+				+0.5
2,834,502	-				+0.4
2,834,502	-				-0.8
2,834,502	-				+0.0
2,834,513	-				-0.7
2,834,516	+				-1.2
2,834,516	+				+0.2
2,834,516	+				-0.8
2,834,516	+				-0.5
2,834,517	-				-0.7
2,834,517	-				-0.3
2,834,517	-				+0.2
2,834,517	-				-0.8
2,834,517	-				-0.7
2,834,520	+				+0.2
2,834,521	-				+0.5
2,834,531	+				-0.8
2,834,531	+				-0.8
2,834,532	-				+0.4
2,834,532	-				-1.8
2,834,532	-				+0.2
2,834,535	+				-0.6
2,834,535	+				+0.2
2,834,535	+				+1.0
2,834,535	+				+1.0
2,834,536	-				-0.0
2,834,536	-				-0.8
2,834,536	-				-0.4
2,834,539	+				-1.0
2,834,539	+				-0.4
2,834,539	+				+0.2
2,834,539	+				+0.5
2,834,540	-				+0.2
2,834,540	-				-0.4
2,834,540	-				+0.2
2,834,540	-				-0.4
2,834,540	-				-0.8
2,834,540	-				-1.4
2,834,550	+				-0.1
2,834,551	-				+2.2
2,834,584	+				-2.2
2,834,584	+				-0.8
2,834,584	+				-0.2
2,834,584	+				+0.2
2,834,585	-				-0.1
2,834,585	-				-0.2
2,834,585	-				-0.0
2,834,585	-				+0.4
2,834,608	+				-0.1
2,834,609	-				-1.2
2,834,609	-				+0.9
2,834,648	-				-0.4
2,834,675	+				+1.2
2,834,675	+				-0.4
2,834,676	-				-0.1
2,834,681	+				-0.0
2,834,681	+				-0.4
2,834,684	+				-0.3
2,834,804	+				-0.4
2,834,844	-				-0.1
2,834,893	-				-1.3
2,834,893	-				+0.2
2,834,893	-				+0.2
2,834,893	-				+0.2
2,834,893	-				-1.4
2,834,893	-				-0.1
2,834,961	+				+0.1
2,834,961	+				-1.1
2,834,961	+				-0.8
2,834,961	+				-0.4
2,835,001	+				+1.2
2,835,002	-				+0.9
2,835,002	-				-0.4
2,835,054	-				-2.7
2,835,054	-				-0.3
2,835,055	+				-0.8
2,835,055	+				-3.4
2,835,055	+				-2.4
2,835,080	+				-0.8
2,835,080	+				+0.5
2,835,175	-		HGI48_RS12960	0.14	-2.7