Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS12935

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,826,925	-				-0.4
2,826,932	+				+0.6
2,826,932	+				-0.2
2,826,946	+				-0.8
2,826,946	+				-1.1
2,826,946	+				+0.5
2,826,946	+				+0.5
2,826,947	-				+1.2
2,826,947	-				-2.3
2,826,947	-				-0.3
2,826,947	-				+0.7
2,826,987	+				+0.2
2,826,987	+				-0.3
2,826,987	+				+0.3
2,826,987	+				-0.4
2,826,988	-				-0.8
2,826,991	-				-0.4
2,827,116	+				+0.5
2,827,116	+				+0.7
2,827,116	+				-0.4
2,827,117	-				-1.4
2,827,249	+				+0.2
2,827,250	-				+0.3
2,827,252	+				-0.3
2,827,258	+				-0.8
2,827,259	-				-0.1
2,827,259	-				-0.0
2,827,259	-				-0.7
2,827,259	-				-1.2
2,827,260	+				+0.3
2,827,260	+				+1.6
2,827,260	+				-0.3
2,827,260	+				-0.2
2,827,261	-				-0.6
2,827,261	-				-0.8
2,827,261	-				-1.4
2,827,261	-				-2.8
2,827,261	-				-0.0
2,827,261	-				-0.5
2,827,261	-				-0.1
2,827,261	-				+0.8
2,827,261	-				-0.2
2,827,262	+				+0.2
2,827,263	-				+1.5
2,827,263	-				+0.3
2,827,263	-				+0.7
2,827,263	-				+0.9
2,827,263	-				-0.7
2,827,263	-				-0.1
2,827,263	-				+0.2
2,827,263	-				-0.6
2,827,283	-				-0.2
2,827,283	-				-3.0
2,827,330	-		HGI48_RS12930	0.10	-2.2
2,827,628	+				+0.9
2,827,628	+		HGI48_RS12930	0.64	+0.2
2,827,629	-		HGI48_RS12930	0.64	-0.1
2,827,629	-		HGI48_RS12930	0.64	-0.6
2,827,704	+		HGI48_RS12930	0.77	-2.2
2,827,705	-		HGI48_RS12930	0.78	-0.0
2,827,713	-		HGI48_RS12930	0.79	-0.8
2,827,771	+		HGI48_RS12930	0.90	-0.3
2,827,771	+		HGI48_RS12930	0.90	-0.1
2,827,772	-		HGI48_RS12930	0.90	-0.8
2,827,772	-		HGI48_RS12930	0.90	+0.4
2,827,772	-		HGI48_RS12930	0.90	+0.2
2,827,839	+				-0.8
2,827,840	-				-0.2
2,827,840	-				-0.9
2,827,843	+				+0.6
2,827,843	+				-1.2
2,827,843	+				-1.2
2,827,843	+				-1.1
2,827,843	+				+0.7
2,827,844	-				-0.4
2,827,858	+				-0.0
2,827,858	+				-0.1
2,827,858	+				+0.2
2,827,858	+				-1.4
2,827,858	+				-1.0
2,827,858	+				+1.4
2,827,858	+				-1.2
2,827,858	+				-1.1
2,827,858	+				-0.1
2,827,858	+				-0.0
2,827,858	+				+1.0
2,827,858	+				+0.5
2,827,859	-				-0.7
2,827,859	-				-0.8
2,827,859	-				+0.2
2,827,859	-				+1.2
2,827,859	-				-1.0
2,827,859	-				+0.2
2,827,859	-				-0.7
2,827,873	+				-0.2
2,828,168	+		HGI48_RS12935	0.32	-0.8
2,828,168	+		HGI48_RS12935	0.32	+0.1
2,828,169	-		HGI48_RS12935	0.32	+0.3
2,828,169	-		HGI48_RS12935	0.32	+1.4
2,828,169	-		HGI48_RS12935	0.32	-0.6
2,828,171	-		HGI48_RS12935	0.33	-2.5
2,828,355	-		HGI48_RS12935	0.52	-0.6
2,828,355	-		HGI48_RS12935	0.52	+0.4
2,828,414	-		HGI48_RS12935	0.58	-1.2
2,828,414	-				-0.8
2,828,426	+		HGI48_RS12935	0.59	+0.2
2,828,426	+				+0.2
2,828,429	+		HGI48_RS12935	0.59	+0.3
2,828,430	-		HGI48_RS12935	0.59	-1.2
2,828,430	-		HGI48_RS12935	0.59	-0.7
2,828,430	-		HGI48_RS12935	0.59	-0.4
2,828,522	+				+0.6
2,828,522	+		HGI48_RS12935	0.69	-0.9
2,828,523	-		HGI48_RS12935	0.69	+0.2
2,828,523	-		HGI48_RS12935	0.69	-0.4
2,828,534	+		HGI48_RS12935	0.70	+0.8
2,828,535	-		HGI48_RS12935	0.70	-0.8
2,828,535	-		HGI48_RS12935	0.70	-1.3
2,828,663	+		HGI48_RS12935	0.84	-0.8
2,828,664	-		HGI48_RS12935	0.84	+0.7
2,828,716	-		HGI48_RS12935	0.89	-0.7
2,828,816	+				-0.8
2,828,816	+				-0.3
2,828,816	+				+0.2
2,828,816	+				-1.1
2,828,817	-				-0.2
2,828,817	-				-0.2
2,828,859	+				-1.8
2,828,896	+				-0.5
2,828,933	-				-0.2
2,829,194	+		HGI48_RS12940	0.30	-2.4
2,829,209	+		HGI48_RS12940	0.31	-3.3
2,829,209	+		HGI48_RS12940	0.31	-0.8
2,829,210	-		HGI48_RS12940	0.32	-0.8
2,829,210	-		HGI48_RS12940	0.32	-0.7
2,829,232	+		HGI48_RS12940	0.33	+0.7
2,829,232	+		HGI48_RS12940	0.33	-0.7
2,829,309	+		HGI48_RS12940	0.40	-2.3
2,829,309	+		HGI48_RS12940	0.40	+0.5
2,829,309	+		HGI48_RS12940	0.40	+0.0
2,829,309	+		HGI48_RS12940	0.40	-1.8
2,829,309	+		HGI48_RS12940	0.40	+0.4
2,829,310	-				-1.4
2,829,310	-		HGI48_RS12940	0.40	-0.4
2,829,335	-				+1.7
2,829,338	-		HGI48_RS12940	0.43	-0.3
2,829,419	+		HGI48_RS12940	0.50	-0.3
2,829,419	+		HGI48_RS12940	0.50	-0.2
2,829,419	+		HGI48_RS12940	0.50	+0.2
2,829,420	-		HGI48_RS12940	0.50	+1.0
2,829,428	-		HGI48_RS12940	0.50	-0.3
2,829,512	+		HGI48_RS12940	0.58	-1.7
2,829,512	+		HGI48_RS12940	0.58	+0.1
2,829,512	+		HGI48_RS12940	0.58	-0.0
2,829,512	+		HGI48_RS12940	0.58	+0.4
2,829,513	-		HGI48_RS12940	0.58	-0.1