Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS12925

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,824,955	-				+0.0
2,825,002	-				+0.0
2,825,029	+				-0.5
2,825,029	+				+0.1
2,825,029	+				-1.4
2,825,030	-				-0.3
2,825,030	-				+0.3
2,825,057	-				-0.5
2,825,057	-				+0.1
2,825,064	+				-1.4
2,825,065	-				-0.4
2,825,065	-				-0.3
2,825,223	+		HGI48_RS12920	0.27	-1.0
2,825,447	+		HGI48_RS12920	0.68	-2.2
2,825,447	+		HGI48_RS12920	0.68	+0.1
2,825,447	+		HGI48_RS12920	0.68	-0.1
2,825,447	+		HGI48_RS12920	0.68	-2.0
2,825,447	+				-0.4
2,825,591	+				+0.1
2,825,631	+				-0.3
2,825,632	-				-0.9
2,825,641	+				-1.2
2,825,641	+				+0.1
2,825,641	+				-0.4
2,825,642	-				-0.9
2,825,642	-				+2.1
2,825,642	-				-0.4
2,825,642	-				+0.0
2,825,644	+				-0.9
2,825,644	+				-1.1
2,825,645	-				-0.1
2,825,666	+				+1.3
2,825,666	+				-0.6
2,825,667	-				+0.3
2,825,667	-				-0.3
2,825,667	-				+0.1
2,825,732	-				-1.2
2,825,845	-				-0.3
2,825,887	+				+0.1
2,825,911	-				-1.8
2,825,960	+				-2.7
2,825,960	+				-1.1
2,825,961	-				-1.7
2,825,961	-				-0.0
2,825,961	-				+1.5
2,826,001	+				+0.2
2,826,070	-		HGI48_RS12925	0.13	-1.8
2,826,157	-		HGI48_RS12925	0.21	+0.8
2,826,207	+		HGI48_RS12925	0.26	+0.8
2,826,239	+		HGI48_RS12925	0.29	-0.8
2,826,239	+		HGI48_RS12925	0.29	-1.0
2,826,411	+				+0.7
2,826,437	+		HGI48_RS12925	0.49	+1.5
2,826,449	+				-0.4
2,826,451	+		HGI48_RS12925	0.50	-0.8
2,826,466	+		HGI48_RS12925	0.52	-0.3
2,826,474	-		HGI48_RS12925	0.53	+0.9
2,826,479	+		HGI48_RS12925	0.53	+0.3
2,826,479	+		HGI48_RS12925	0.53	-0.8
2,826,479	+		HGI48_RS12925	0.53	-0.1
2,826,479	+		HGI48_RS12925	0.53	+0.4
2,826,480	-		HGI48_RS12925	0.53	-0.0
2,826,480	-		HGI48_RS12925	0.53	-1.2
2,826,480	-		HGI48_RS12925	0.53	-0.1
2,826,480	-		HGI48_RS12925	0.53	-0.9
2,826,490	+		HGI48_RS12925	0.54	-0.8
2,826,490	+				+0.2
2,826,539	+		HGI48_RS12925	0.59	+1.0
2,826,539	+				+3.6
2,826,711	-		HGI48_RS12925	0.76	+0.1
2,826,711	-		HGI48_RS12925	0.76	-1.2
2,826,925	-				-0.4
2,826,932	+				+0.6
2,826,932	+				-0.2
2,826,946	+				-0.8
2,826,946	+				-1.1
2,826,946	+				+0.5
2,826,946	+				+0.5
2,826,947	-				+1.2
2,826,947	-				-2.3
2,826,947	-				-0.3
2,826,947	-				+0.7
2,826,987	+				+0.2
2,826,987	+				-0.3
2,826,987	+				+0.3
2,826,987	+				-0.4
2,826,988	-				-0.8
2,826,991	-				-0.4
2,827,116	+				+0.5
2,827,116	+				+0.7
2,827,116	+				-0.4
2,827,117	-				-1.4
2,827,249	+				+0.2
2,827,250	-				+0.3
2,827,252	+				-0.3
2,827,258	+				-0.8
2,827,259	-				-0.1
2,827,259	-				-0.0
2,827,259	-				-0.7
2,827,259	-				-1.2
2,827,260	+				+0.3
2,827,260	+				+1.6
2,827,260	+				-0.3
2,827,260	+				-0.2
2,827,261	-				-0.6
2,827,261	-				-0.8
2,827,261	-				-1.4
2,827,261	-				-2.8
2,827,261	-				-0.0
2,827,261	-				-0.5
2,827,261	-				-0.1
2,827,261	-				+0.8
2,827,261	-				-0.2
2,827,262	+				+0.2
2,827,263	-				+1.5
2,827,263	-				+0.3
2,827,263	-				+0.7
2,827,263	-				+0.9
2,827,263	-				-0.7
2,827,263	-				-0.1
2,827,263	-				+0.2
2,827,263	-				-0.6
2,827,283	-				-0.2
2,827,283	-				-3.0
2,827,330	-		HGI48_RS12930	0.10	-2.2
2,827,628	+				+0.9
2,827,628	+		HGI48_RS12930	0.64	+0.2
2,827,629	-		HGI48_RS12930	0.64	-0.1
2,827,629	-		HGI48_RS12930	0.64	-0.6
2,827,704	+		HGI48_RS12930	0.77	-2.2
2,827,705	-		HGI48_RS12930	0.78	-0.0
2,827,713	-		HGI48_RS12930	0.79	-0.8
2,827,771	+		HGI48_RS12930	0.90	-0.3
2,827,771	+		HGI48_RS12930	0.90	-0.1
2,827,772	-		HGI48_RS12930	0.90	-0.8
2,827,772	-		HGI48_RS12930	0.90	+0.4
2,827,772	-		HGI48_RS12930	0.90	+0.2
2,827,839	+				-0.8
2,827,840	-				-0.2
2,827,840	-				-0.9
2,827,843	+				+0.6
2,827,843	+				-1.2
2,827,843	+				-1.2
2,827,843	+				-1.1
2,827,843	+				+0.7
2,827,844	-				-0.4
2,827,858	+				-0.0
2,827,858	+				-0.1
2,827,858	+				+0.2
2,827,858	+				-1.4
2,827,858	+				-1.0
2,827,858	+				+1.4
2,827,858	+				-1.2
2,827,858	+				-1.1
2,827,858	+				-0.1
2,827,858	+				-0.0
2,827,858	+				+1.0
2,827,858	+				+0.5
2,827,859	-				-0.7
2,827,859	-				-0.8
2,827,859	-				+0.2
2,827,859	-				+1.2
2,827,859	-				-1.0
2,827,859	-				+0.2
2,827,859	-				-0.7
2,827,873	+				-0.2