Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS12410

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,711,358	+		HGI48_RS12405	0.48	-0.1
2,711,454	+		HGI48_RS12405	0.54	-0.6
2,711,454	+		HGI48_RS12405	0.54	-0.2
2,711,454	+		HGI48_RS12405	0.54	-1.9
2,711,455	-		HGI48_RS12405	0.54	-0.2
2,711,455	-		HGI48_RS12405	0.54	+0.4
2,711,455	-		HGI48_RS12405	0.54	+0.3
2,711,483	-				+0.1
2,711,485	-		HGI48_RS12405	0.56	+0.4
2,711,485	-		HGI48_RS12405	0.56	-1.1
2,711,541	+		HGI48_RS12405	0.60	-1.3
2,711,577	+		HGI48_RS12405	0.62	+0.1
2,711,577	+				+2.5
2,711,578	-		HGI48_RS12405	0.62	-0.9
2,711,578	-		HGI48_RS12405	0.62	-0.2
2,711,581	+		HGI48_RS12405	0.63	-0.2
2,711,581	+		HGI48_RS12405	0.63	-2.4
2,711,582	-		HGI48_RS12405	0.63	-0.3
2,711,584	-		HGI48_RS12405	0.63	-1.2
2,711,584	-		HGI48_RS12405	0.63	+1.3
2,711,584	-		HGI48_RS12405	0.63	-1.4
2,711,593	-		HGI48_RS12405	0.63	-0.1
2,711,624	+				-0.4
2,711,625	-		HGI48_RS12405	0.66	+0.1
2,711,670	+		HGI48_RS12405	0.69	-2.2
2,711,670	+		HGI48_RS12405	0.69	-1.9
2,711,674	+		HGI48_RS12405	0.69	-0.1
2,711,674	+				-0.9
2,711,719	-		HGI48_RS12405	0.72	-0.7
2,711,743	+		HGI48_RS12405	0.73	+0.8
2,711,766	-		HGI48_RS12405	0.75	+0.1
2,711,766	-		HGI48_RS12405	0.75	+0.4
2,711,802	+		HGI48_RS12405	0.77	+0.1
2,711,802	+		HGI48_RS12405	0.77	-0.2
2,711,843	-		HGI48_RS12405	0.80	+0.3
2,711,856	+		HGI48_RS12405	0.81	+0.4
2,711,857	-				+3.1
2,711,857	-		HGI48_RS12405	0.81	+0.1
2,711,858	+		HGI48_RS12405	0.81	-0.1
2,711,859	-		HGI48_RS12405	0.81	-0.1
2,712,138	-				-0.5
2,712,237	+				+1.2
2,712,237	+				-2.0
2,712,237	+				+0.2
2,712,237	+				-1.4
2,712,238	-				+0.4
2,712,238	-				-0.8
2,712,238	-				-0.2
2,712,238	-				-0.1
2,712,397	-		HGI48_RS12410	0.11	+0.2
2,712,451	+		HGI48_RS12410	0.17	-1.1
2,712,452	-		HGI48_RS12410	0.17	-1.4
2,712,452	-		HGI48_RS12410	0.17	-0.2
2,712,612	+				+1.5
2,712,613	-		HGI48_RS12410	0.34	-0.5
2,712,616	+				+1.5
2,712,616	+		HGI48_RS12410	0.34	-0.8
2,712,617	-		HGI48_RS12410	0.34	-0.2
2,712,835	-		HGI48_RS12410	0.57	-0.4
2,712,863	-		HGI48_RS12410	0.60	-1.8
2,712,925	-		HGI48_RS12410	0.67	-1.0
2,712,925	-		HGI48_RS12410	0.67	-0.5
2,713,221	-				+0.5
2,713,235	-				-3.2
2,713,360	+				-0.6
2,713,361	-				+0.4
2,713,361	-				+0.2
2,713,424	+				-0.8
2,713,425	-				+0.9
2,713,425	-				+0.2
2,713,425	-				-0.4
2,713,433	+				-1.7
2,713,433	+				+1.0
2,713,434	-				+1.0
2,713,440	+				-0.1
2,713,440	+				-1.4
2,713,457	+				+0.5
2,713,458	-				-0.8
2,713,458	-				-0.1
2,713,458	-				+0.3
2,713,458	-				-0.4
2,713,465	+				-2.2
2,713,466	-				-1.0
2,713,529	+				+1.0
2,713,557	-				+0.2
2,713,572	+				+2.2
2,713,572	+				+0.7
2,713,572	+				-1.0
2,713,573	-				-0.7
2,713,635	+				-0.1
2,713,635	+				-0.2
2,713,635	+				+0.3
2,713,636	-				-0.1
2,713,800	+		HGI48_RS12415	0.18	-0.2
2,713,800	+		HGI48_RS12415	0.18	-0.3
2,713,800	+		HGI48_RS12415	0.18	-0.3
2,713,800	+		HGI48_RS12415	0.18	-1.4
2,713,800	+		HGI48_RS12415	0.18	+0.7
2,713,801	-		HGI48_RS12415	0.18	+1.2
2,713,801	-		HGI48_RS12415	0.18	+0.3
2,713,801	-		HGI48_RS12415	0.18	+0.1
2,713,801	-		HGI48_RS12415	0.18	+0.4
2,713,801	-		HGI48_RS12415	0.18	-1.8
2,713,801	-		HGI48_RS12415	0.18	-1.7
2,713,801	-		HGI48_RS12415	0.18	-0.3
2,713,801	-		HGI48_RS12415	0.18	-0.3
2,713,801	-		HGI48_RS12415	0.18	+0.8
2,713,801	-		HGI48_RS12415	0.18	+0.3
2,713,801	-				+1.2
2,713,801	-				+1.5
2,713,801	-		HGI48_RS12415	0.18	+0.2
2,713,805	+		HGI48_RS12415	0.18	-2.7
2,713,805	+				+0.6
2,713,805	+		HGI48_RS12415	0.18	-2.5
2,713,805	+		HGI48_RS12415	0.18	+1.5
2,713,806	-		HGI48_RS12415	0.18	-1.0
2,713,806	-				+1.5
2,713,806	-				-0.8
2,713,806	-		HGI48_RS12415	0.18	+1.0
2,713,930	-		HGI48_RS12415	0.31	+0.4
2,713,930	-		HGI48_RS12415	0.31	-2.8
2,713,990	-				-0.8
2,714,009	+		HGI48_RS12415	0.39	-1.0
2,714,100	+		HGI48_RS12415	0.48	-0.1
2,714,101	-		HGI48_RS12415	0.48	-1.0
2,714,124	+		HGI48_RS12415	0.51	+0.4
2,714,125	-		HGI48_RS12415	0.51	-3.0
2,714,125	-				-1.4
2,714,125	-				+0.2
2,714,236	+				+0.6