Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS12000

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,614,656	-				-0.1
2,614,692	+				-0.4
2,614,693	-				+1.4
2,614,693	-				-1.5
2,614,708	+				-0.6
2,614,708	+				+0.8
2,614,708	+				-0.3
2,614,708	+				+0.1
2,614,708	+				+1.4
2,614,709	-				-0.1
2,614,709	-				+0.8
2,614,709	-				-0.2
2,614,728	-				-0.4
2,614,728	-				+0.5
2,614,738	-				-0.6
2,614,742	+				-1.1
2,614,743	-				-1.6
2,614,753	+				+0.5
2,614,753	+				-1.0
2,614,754	-				-1.4
2,614,837	+				+0.5
2,614,837	+				-0.6
2,614,874	-				-0.5
2,614,881	+				-0.0
2,614,882	-				+0.9
2,614,882	-				-0.3
2,614,939	+				-0.6
2,614,939	+				-0.2
2,614,943	+				-0.4
2,614,943	+				+1.4
2,614,943	+				-2.5
2,614,943	+				+0.1
2,614,943	+				-1.7
2,614,943	+				-1.9
2,614,944	-				-1.4
2,614,944	-				+0.1
2,614,944	-				+0.3
2,614,963	+				-1.6
2,614,966	+				+0.2
2,614,966	+				+0.0
2,614,966	+				+0.8
2,614,966	+				-0.2
2,614,976	-				+0.4
2,614,994	-				+0.1
2,615,023	+				-0.9
2,615,029	+				-0.2
2,615,029	+				+0.4
2,615,029	+				-1.5
2,615,030	-				-0.9
2,615,030	-				-0.4
2,615,055	+		HGI48_RS11995	0.12	+0.3
2,615,056	-		HGI48_RS11995	0.12	-0.3
2,615,077	+		HGI48_RS11995	0.16	-0.5
2,615,077	+				+0.1
2,615,077	+		HGI48_RS11995	0.16	+0.4
2,615,114	+		HGI48_RS11995	0.22	-0.8
2,615,115	-		HGI48_RS11995	0.22	+0.1
2,615,115	-		HGI48_RS11995	0.22	+0.2
2,615,305	+		HGI48_RS11995	0.56	-2.7
2,615,305	+		HGI48_RS11995	0.56	-0.6
2,615,305	+		HGI48_RS11995	0.56	+1.2
2,615,378	+		HGI48_RS11995	0.69	-2.5
2,615,394	+		HGI48_RS11995	0.72	-0.2
2,615,394	+		HGI48_RS11995	0.72	-0.7
2,615,394	+		HGI48_RS11995	0.72	+0.7
2,615,394	+		HGI48_RS11995	0.72	+1.3
2,615,394	+		HGI48_RS11995	0.72	+0.6
2,615,394	+		HGI48_RS11995	0.72	-2.9
2,615,395	+		HGI48_RS11995	0.72	+0.4
2,615,396	+		HGI48_RS11995	0.73	-0.9
2,615,396	+		HGI48_RS11995	0.73	-0.4
2,615,396	+		HGI48_RS11995	0.73	+0.1
2,615,397	-		HGI48_RS11995	0.73	-0.1
2,615,505	+				-1.5
2,615,505	+				-0.6
2,615,506	-				-0.5
2,615,622	+				-0.3
2,615,622	+				+0.4
2,615,661	+				-0.5
2,615,683	+				-1.5
2,615,683	+				-0.5
2,615,683	+				-0.3
2,615,683	+				-1.7
2,615,684	-				-1.5
2,615,773	-		HGI48_RS12000	0.22	-1.7
2,616,069	+		HGI48_RS12000	0.66	-2.9
2,616,069	+		HGI48_RS12000	0.66	-0.7
2,616,069	+		HGI48_RS12000	0.66	-0.7
2,616,069	+		HGI48_RS12000	0.66	-3.1
2,616,069	+				-0.5
2,616,070	-		HGI48_RS12000	0.66	+0.1
2,616,070	-		HGI48_RS12000	0.66	-0.4
2,616,070	-		HGI48_RS12000	0.66	-0.1
2,616,210	+		HGI48_RS12000	0.87	+0.0
2,616,216	+		HGI48_RS12000	0.88	-0.2
2,616,216	+		HGI48_RS12000	0.88	-2.2
2,616,217	-		HGI48_RS12000	0.88	-0.6
2,616,258	+				+0.0
2,616,259	-				-0.9
2,616,264	+				-0.6
2,616,264	+				-0.3
2,616,264	+				+0.1
2,616,268	+				-0.2
2,616,269	-				-0.8
2,616,292	-				-0.5
2,616,292	-				+0.9
2,616,292	-				+1.1
2,616,538	+		HGI48_RS12005	0.33	-0.2
2,616,539	-		HGI48_RS12005	0.33	+0.1
2,616,539	-		HGI48_RS12005	0.33	+0.1
2,616,539	-		HGI48_RS12005	0.33	-0.2
2,616,539	-		HGI48_RS12005	0.33	+0.3
2,616,557	+		HGI48_RS12005	0.36	-0.6
2,616,558	-		HGI48_RS12005	0.36	-1.6
2,616,659	+		HGI48_RS12005	0.50	+0.7
2,616,659	+		HGI48_RS12005	0.50	+0.2
2,616,669	-		HGI48_RS12005	0.52	-0.4
2,616,669	-		HGI48_RS12005	0.52	-0.5
2,616,943	+		HGI48_RS12005	0.90	+0.1
2,617,022	+				+1.7
2,617,022	+				+0.7
2,617,023	-				-1.5
2,617,225	+		HGI48_RS12010	0.13	-0.9
2,617,225	+		HGI48_RS12010	0.13	-0.2
2,617,226	-		HGI48_RS12010	0.14	-0.0
2,617,226	-		HGI48_RS12010	0.14	-0.7
2,617,249	+		HGI48_RS12010	0.15	+0.1
2,617,249	+		HGI48_RS12010	0.15	+0.4
2,617,250	-		HGI48_RS12010	0.15	+0.0
2,617,250	-		HGI48_RS12010	0.15	-0.9
2,617,250	-		HGI48_RS12010	0.15	+0.1