Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS09725 and HGI48_RS09730 are separated by 6 nucleotides HGI48_RS09730 and HGI48_RS09735 overlap by 1 nucleotides HGI48_RS09735 and HGI48_RS09740 are separated by 14 nucleotides
HGI48_RS09725: HGI48_RS09725 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 2,100,415 to 2,101,152
_RS09725
HGI48_RS09730: HGI48_RS09730 - imidazole glycerol phosphate synthase subunit HisH, at 2,101,159 to 2,101,749
_RS09730
HGI48_RS09735: HGI48_RS09735 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 2,101,749 to 2,102,816
_RS09735
HGI48_RS09740: HGI48_RS09740 - histidinol-phosphate transaminase, at 2,102,831 to 2,103,901
_RS09740
Position (kb)
2101
2102
2103 Strain fitness (log2 ratio)
-2
-1
0
1 at 2101.232 kb on + strand, within HGI48_RS09730 at 2101.438 kb on + strand, within HGI48_RS09730 at 2101.697 kb on + strand at 2101.698 kb on - strand at 2101.975 kb on + strand, within HGI48_RS09735 at 2101.975 kb on + strand, within HGI48_RS09735 at 2101.975 kb on + strand at 2102.041 kb on - strand, within HGI48_RS09735 at 2102.357 kb on + strand, within HGI48_RS09735 at 2102.357 kb on + strand, within HGI48_RS09735 at 2102.440 kb on + strand at 2103.280 kb on + strand, within HGI48_RS09740 at 2103.351 kb on + strand, within HGI48_RS09740 at 2103.351 kb on + strand, within HGI48_RS09740 at 2103.459 kb on + strand, within HGI48_RS09740 at 2103.460 kb on - strand, within HGI48_RS09740
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,101,232 + HGI48_RS09730 0.12 -0.9 2,101,438 + HGI48_RS09730 0.47 -0.8 2,101,697 + -0.3 2,101,698 - +0.1 2,101,975 + HGI48_RS09735 0.21 -1.4 2,101,975 + HGI48_RS09735 0.21 -0.9 2,101,975 + +1.1 2,102,041 - HGI48_RS09735 0.27 +0.6 2,102,357 + HGI48_RS09735 0.57 -1.9 2,102,357 + HGI48_RS09735 0.57 -0.4 2,102,440 + +0.9 2,103,280 + HGI48_RS09740 0.42 -0.5 2,103,351 + HGI48_RS09740 0.49 -0.5 2,103,351 + HGI48_RS09740 0.49 +0.6 2,103,459 + HGI48_RS09740 0.59 -1.4 2,103,460 - HGI48_RS09740 0.59 -2.7
Or see this region's nucleotide sequence