Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09735

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS09725 and HGI48_RS09730 are separated by 6 nucleotidesHGI48_RS09730 and HGI48_RS09735 overlap by 1 nucleotidesHGI48_RS09735 and HGI48_RS09740 are separated by 14 nucleotides HGI48_RS09725: HGI48_RS09725 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 2,100,415 to 2,101,152 _RS09725 HGI48_RS09730: HGI48_RS09730 - imidazole glycerol phosphate synthase subunit HisH, at 2,101,159 to 2,101,749 _RS09730 HGI48_RS09735: HGI48_RS09735 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 2,101,749 to 2,102,816 _RS09735 HGI48_RS09740: HGI48_RS09740 - histidinol-phosphate transaminase, at 2,102,831 to 2,103,901 _RS09740 Position (kb) 2101 2102 2103Strain fitness (log2 ratio) -2 -1 0 1at 2101.232 kb on + strand, within HGI48_RS09730at 2101.438 kb on + strand, within HGI48_RS09730at 2101.697 kb on + strandat 2101.698 kb on - strandat 2101.975 kb on + strand, within HGI48_RS09735at 2101.975 kb on + strand, within HGI48_RS09735at 2101.975 kb on + strandat 2102.041 kb on - strand, within HGI48_RS09735at 2102.357 kb on + strand, within HGI48_RS09735at 2102.357 kb on + strand, within HGI48_RS09735at 2102.440 kb on + strandat 2103.280 kb on + strand, within HGI48_RS09740at 2103.351 kb on + strand, within HGI48_RS09740at 2103.351 kb on + strand, within HGI48_RS09740at 2103.459 kb on + strand, within HGI48_RS09740at 2103.460 kb on - strand, within HGI48_RS09740

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,101,232 + HGI48_RS09730 0.12 -0.9
2,101,438 + HGI48_RS09730 0.47 -0.8
2,101,697 + -0.3
2,101,698 - +0.1
2,101,975 + HGI48_RS09735 0.21 -1.4
2,101,975 + HGI48_RS09735 0.21 -0.9
2,101,975 + +1.1
2,102,041 - HGI48_RS09735 0.27 +0.6
2,102,357 + HGI48_RS09735 0.57 -1.9
2,102,357 + HGI48_RS09735 0.57 -0.4
2,102,440 + +0.9
2,103,280 + HGI48_RS09740 0.42 -0.5
2,103,351 + HGI48_RS09740 0.49 -0.5
2,103,351 + HGI48_RS09740 0.49 +0.6
2,103,459 + HGI48_RS09740 0.59 -1.4
2,103,460 - HGI48_RS09740 0.59 -2.7

Or see this region's nucleotide sequence