Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS08125

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,745,309	-				+0.2
1,745,309	-				-1.8
1,745,311	-				+0.4
1,745,311	-				-0.8
1,745,343	-				-1.1
1,745,343	-				-1.8
1,745,343	-				-0.1
1,745,374	+				-0.4
1,745,374	+				-2.4
1,745,374	+				-1.6
1,745,375	-				+0.0
1,745,413	+				+2.2
1,745,535	+		HGI48_RS08120	0.20	+0.2
1,745,535	+		HGI48_RS08120	0.20	-0.2
1,745,585	+		HGI48_RS08120	0.27	-2.1
1,745,586	-		HGI48_RS08120	0.27	-0.9
1,745,586	-		HGI48_RS08120	0.27	+0.2
1,745,586	-		HGI48_RS08120	0.27	-1.3
1,745,586	-		HGI48_RS08120	0.27	-0.2
1,745,588	+		HGI48_RS08120	0.27	-2.2
1,745,588	+				+0.6
1,745,589	-		HGI48_RS08120	0.27	-0.3
1,745,589	-		HGI48_RS08120	0.27	-0.0
1,745,656	+		HGI48_RS08120	0.36	+0.2
1,745,657	-		HGI48_RS08120	0.36	-1.8
1,745,657	-				+0.6
1,745,657	-		HGI48_RS08120	0.36	+0.0
1,745,658	+		HGI48_RS08120	0.36	+0.5
1,745,658	+		HGI48_RS08120	0.36	+0.9
1,745,658	+		HGI48_RS08120	0.36	+0.8
1,745,659	-		HGI48_RS08120	0.37	-2.1
1,745,659	-		HGI48_RS08120	0.37	-1.1
1,745,689	+		HGI48_RS08120	0.41	-0.2
1,745,689	+		HGI48_RS08120	0.41	+1.0
1,745,689	+		HGI48_RS08120	0.41	-0.1
1,745,690	-		HGI48_RS08120	0.41	-0.6
1,745,766	-		HGI48_RS08120	0.51	-1.3
1,745,766	-		HGI48_RS08120	0.51	-0.2
1,745,766	-		HGI48_RS08120	0.51	+0.4
1,745,807	-		HGI48_RS08120	0.56	-2.2
1,745,807	-		HGI48_RS08120	0.56	+0.6
1,745,807	-		HGI48_RS08120	0.56	-0.1
1,745,883	+		HGI48_RS08120	0.66	+0.5
1,745,883	+		HGI48_RS08120	0.66	+0.6
1,745,884	-		HGI48_RS08120	0.66	-0.1
1,745,884	-		HGI48_RS08120	0.66	-2.1
1,745,884	-		HGI48_RS08120	0.66	-1.4
1,745,884	-		HGI48_RS08120	0.66	+0.2
1,745,985	+		HGI48_RS08120	0.79	+0.8
1,745,989	-				+0.2
1,746,080	+				+0.9
1,746,081	-				-0.8
1,746,159	-				+0.2
1,746,229	-				-1.2
1,746,229	-				-0.2
1,746,232	+				-0.5
1,746,232	+				-0.2
1,746,233	-				-0.6
1,746,233	-				-2.4
1,746,243	-				+1.0
1,746,243	-				+0.9
1,746,290	+				+0.5
1,746,306	+				-0.0
1,746,307	-				-1.1
1,746,307	-				+0.2
1,746,451	+		HGI48_RS08125	0.31	+0.5
1,746,575	-		HGI48_RS08125	0.57	+0.1
1,746,749	+				+0.2
1,746,750	-				-0.6
1,746,750	-				-0.1
1,746,762	+				+0.8
1,746,763	-				+0.4
1,746,776	+				+1.2
1,746,776	+				-0.8
1,746,776	+				+0.7
1,746,777	-				-0.0
1,746,777	-				-0.6
1,746,777	-				+0.2
1,746,777	-				-0.6
1,746,791	+				+1.2
1,746,792	-				+0.6
1,746,792	-				-0.1
1,746,898	-				-0.6
1,746,900	+				-0.0
1,746,901	-				+0.0
1,746,901	-				+1.2
1,746,909	+				-0.8
1,746,930	-		HGI48_RS08130	0.12	+0.1
1,746,942	+		HGI48_RS08130	0.13	-0.2
1,746,942	+				-0.8
1,746,942	+		HGI48_RS08130	0.13	+0.2
1,746,943	-		HGI48_RS08130	0.13	+0.8
1,746,943	-		HGI48_RS08130	0.13	-0.7
1,747,020	+		HGI48_RS08130	0.19	+0.2
1,747,020	+		HGI48_RS08130	0.19	-0.7
1,747,020	+		HGI48_RS08130	0.19	+0.3
1,747,020	+		HGI48_RS08130	0.19	+0.8
1,747,020	+		HGI48_RS08130	0.19	-0.7
1,747,021	-		HGI48_RS08130	0.19	-0.2
1,747,021	-		HGI48_RS08130	0.19	-1.1
1,747,039	+		HGI48_RS08130	0.21	+1.4
1,747,040	-		HGI48_RS08130	0.21	+0.9
1,747,040	-		HGI48_RS08130	0.21	-0.1
1,747,040	-				-0.4
1,747,040	-		HGI48_RS08130	0.21	-0.4
1,747,040	-		HGI48_RS08130	0.21	-0.4
1,747,121	-		HGI48_RS08130	0.28	-0.5
1,747,121	-				+1.8
1,747,131	+		HGI48_RS08130	0.29	-2.1
1,747,131	+		HGI48_RS08130	0.29	+0.1
1,747,131	+		HGI48_RS08130	0.29	-0.5
1,747,131	+		HGI48_RS08130	0.29	-0.6
1,747,132	-		HGI48_RS08130	0.29	+0.1
1,747,133	+		HGI48_RS08130	0.29	-1.8
1,747,134	-		HGI48_RS08130	0.29	-0.1
1,747,134	-		HGI48_RS08130	0.29	+0.5
1,747,149	+		HGI48_RS08130	0.30	-0.4
1,747,150	-		HGI48_RS08130	0.30	-2.4
1,747,263	+		HGI48_RS08130	0.40	-0.8
1,747,346	+		HGI48_RS08130	0.47	+1.2
1,747,347	-		HGI48_RS08130	0.47	-0.2
1,747,347	-		HGI48_RS08130	0.47	+0.8
1,747,404	+		HGI48_RS08130	0.52	+1.0
1,747,405	-		HGI48_RS08130	0.52	-0.8
1,747,405	-		HGI48_RS08130	0.52	+0.4
1,747,405	-		HGI48_RS08130	0.52	-1.1
1,747,449	+		HGI48_RS08130	0.56	-0.7
1,747,449	+		HGI48_RS08130	0.56	+0.2
1,747,450	-		HGI48_RS08130	0.56	-0.0
1,747,511	+		HGI48_RS08130	0.61	+0.6
1,747,611	+				-1.4
1,747,611	+				-0.4
1,747,611	+		HGI48_RS08130	0.69	+0.5
1,747,611	+		HGI48_RS08130	0.69	-2.2
1,747,611	+		HGI48_RS08130	0.69	-0.0
1,747,612	-		HGI48_RS08130	0.70	-1.4
1,747,612	-		HGI48_RS08130	0.70	-0.9
1,747,612	-		HGI48_RS08130	0.70	-1.2
1,747,612	-		HGI48_RS08130	0.70	+0.8
1,747,612	-		HGI48_RS08130	0.70	-0.5
1,747,612	-		HGI48_RS08130	0.70	+0.6
1,747,612	-				+2.2
1,747,612	-		HGI48_RS08130	0.70	+0.7
1,747,612	-		HGI48_RS08130	0.70	+0.4
1,747,628	-				+0.2
1,747,628	-				+0.6
1,747,628	-		HGI48_RS08130	0.71	-0.6
1,747,628	-		HGI48_RS08130	0.71	-2.0
1,747,628	-		HGI48_RS08130	0.71	-0.1
1,747,629	+		HGI48_RS08130	0.71	+0.5
1,747,642	+		HGI48_RS08130	0.72	-2.6
1,747,643	-		HGI48_RS08130	0.72	+0.7